Gene detail

Detailed information of amic_s0086.g43.t1 in Acropora microphthalma

Genomic Location: sc0000086_pilon:658398...677212
NR annotation: XP_044168792.1, ARF GTPase-activating protein GIT1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0086.g43.t1

TATATGAAGCAAGGCATCACAGTTCTCGAGACCTTAATGGCTTGAATAATGTCTTCAAGGATGAAGCTACGTCCATCTACAGAAATTTGTGCGGATTGCAGCGCCCTTGGGCCAGAATGGGCGTCAGTGAATCGTGGAGTTTTAATTTGCGACGAATGTTGTAGTGTCCACAGAAGTTTGGGTCGACACATTTCGCAAGTGAAACATCTTAGACATTCGTCTTGGAGTCCAACTTTACTAGCGATGGTTCGGCAGCTTGTTGCCAATGGAGCCAATTCAATTTGGGAACATTCACTTCTAGATCCAAATCAAGTAAAAACTGGATTGAGGAAACCAAACCAAAAGGATCGTGTTCATCCTACAAAAGCTACTTTCATAAAAGCAAAATATCAAAGACTGGCATTTGTACCTCGTCTGCCTTGTAAAGATGATGACACCATAACTGTGGCAGACCTCAGCCAGCAACTTCATTCAAGTGTTAGAACAGGAAATCTAGAGACTTGTTTGAGACTCCTTTCTCTTGGTGCACGTGCAAACTACTATTATCCTGCAAGAAATAATACTCCGCTTCACGTGGCTGCAAATGCAGGACAAGCCCTTCAAGTTGAGCTTCTTATTGTGCATGGAGCAGATCCAAGTAAACCAGATAAAAATGGAAAAACCGCTGTCGATTATGCTTTAGAGGCTGGCTTTACAAATATCGCACAGCGACTTATTGAAGTTCAATATGAGCTAACAGACAGACTTACATATTACCTATGTGGCCGACGTCCAGATCATCAAAGTGGAGTCCATTACCTTATCCCTACAATGGCAGACAGCCGTTTGGATTTGTCAGATGATGCCAATAAAGCCAAATCAAAACTTCAAGCTTTAAACCATCATCTGTTTGAAGAGCTTGCTTCAGATGTGTATGATGAAATTGATAGGAGAGAATGTGATTCAGTTTGGTTGGCTACTCAGAATCACAGTGCACTTGTGAAAGACCCAACAACAGTACCATTTCTTCCTGTCAATCCTTCGTTCTCATCTACAAGAAATCAGGGCAGACAGAAGTTAGCTCTGTTTAATGCTCGAGAATTTGCTACACTGATCATTGATATTTTGAATGATGCAAGAAGGCGGGAACAAGACTCTAATCCTGAGTTGACGCAAGGTATTTCCTGTAACAAGCAAGCAAACCCTTCACAAAAGGTTACAAAAGCTCAGATTGAAAAGGGTACCACCACTAGCTTCTTGGAAGAAGATTCTGTGCCTATGGAACATTACATGAAAGTTGAGAAAGCCTATTCGACAGCCGATGCTCGTGTTCAACAACTTCTCCAAGTCAATGCTACACAATCTCATGAAATCCAGAAGCTTCAGTTACTGGTCCACAAGCTTGAAGATGAAAACAAGGCACTAAAAAAGCAACTTGGGATGCCTAATGGGGAAAGTCTTACAGCAAGTAGCGATGATAATGTGTTCACAGCAAAGGATGACAGTGATGAAGATGACCACGTGGACATTGCTGACATCACACCATATGAAGCCCCAGGCTCTCTCCTAAGGAACCGCTCAGCTCAGCCCAGCCTCCATGGGCAAACTGAGGTTGTAGATGCCAACAGAACTAAAAAGGTCAATCCATATGACAATGTCAGGGAATCACAAGCAGAGCCGGGAGAAGAAAGGAGATATCTCAATGTTGGAGAGATGAGGGAGCATGAACGAATGAGTTCTTCTGATAGCCCTTTTGATGAACAGTTGGATCAAGAAGCTGTTAAGCTGATCAATGAAGGGGATATCCTAGTTAATCAAATCACAAAGGGTTACCCACAGCCGCTGGAAGACACAGCTGCTTCATTCCCTGTTCCACTAATATTTTTAGCGCTGTAAATGGCATGGCAAAATTGTTTCCAGAGGATCCAGTTGTCGAGAGTATGCGTGTTTCGCTTCAACTCATGAAAACCAGTGCTGCGAGACTACAGGTGGAATGCAAGAGCGCTGTGTTGCCTGGCAACACTGTTGACATGGCATTTCTTACCCAGCAGGTCATACAGTGCGCTTACGACATAGCCAAAGCAGCCAAACAGCTGGTCACTACGTTCTCAGTTGAATAGGGTGTTACTGTCCCTCGCTGTGTGACTGTACTTGTAGGTAGAAGAACATTTGAAATTGATAGTCTGGACTTGTTAATTGCGCGTGTTATTCGTCTAACCTTACTGAGTTGTTGGAAAGCTAGATAATGCTATCGTCTTTATCCAGTGTGCTTCTGTATGGTTTAGAGCAGTTTTCAAATGCTTGCCGAAATTATTGCGTGATTGCGATTTCTACGTTTAGTGATTGGCTCAAACTTATTGGCGCGCGTGTTTTTTCAACCAATGAAAAGCAAAACCAAAACCAAGCGCAGCTTGTAGGTGCGATTTTTCCCGCGCTTTGAAAAAGTTGCGGATAATTGCTAGTTCTTCGCGCTGTTTCCTCCTGTTATGATTAGTCGAAGTGACTACTTTGGTATAGGTTTTTTGACAGTCATGCATTTGATCTGTGAGTAGAGATTCATCCAGTGCCATTTCGTTTTGATAATCACTGCAGTTGACTTTATTGCGCTGACTTTGTTGGAATCAAACGGAAAATGAAGAAAACACAGGCCTTCTTTTTCACTGACATTCCCGCATGCAATATTCCTTTTTTTTTTTGTCCTGGTGGCAAATTCTTTGCAACTGAAACAAGCTTGAAGAACTCGCACGGTAATGTTGCTCCTCGGTTATTTTTCATGCTTATAAAATTGAGCCATAATATTTCATTGTTGTCCTTACAATAGGACAGATATGATTATGCTGTGGGCACGTTTTCAAACTAGTTTAAAAGAATTACCATTTTACTCAAAATCAGTCGATCAGGATAGAGATTTTAGCTTGATAACGTGCTGTGAAACTGTTCCATTATCTAACGTTTTCCAAGGCACAAGGATTCCTAGGTTATTCATTTACGAAACTATACTTAGTCTTGACTGTGCTTAATTTATGCGAAAGATTTTGACGTAGGGGATCTCAGTCAACACAGAACCTTAAACAATACAGTTAAGTTAAGTGGCCAACAATTATTCTCATAAATATGATATATGATCCGAATATGTATAATCAGTATCTTGAAATATCGTTTATTCAAATAAAAATGTTAGACGAATAATTTCAAATATCTAGAATCGCGTTTTATTAGCTTGTAGTAATAAAATTAAATAAAGATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2X7	ARF GTPase-activating protein GIT1 OS=Homo sapiens OX=9606 GN=GIT1 PE=1 SV=2
Q9Z272	ARF GTPase-activating protein GIT1 OS=Rattus norvegicus OX=10116 GN=Git1 PE=1 SV=1
Q68FF6	ARF GTPase-activating protein GIT1 OS=Mus musculus OX=10090 GN=Git1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004494 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08518 all species →	GIT_SHD	Spa2 homology domain (SHD) of GIT	Family	Interproscan
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF16559 all species →	GIT_CC	GIT coiled-coil Rho guanine nucleotide exchange factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013724 all species →	Domain	GIT, Spa2 homology (SHD) domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR047161 all species →	Family	ARF GTPase-activating protein Git-like	Interproscan
IPR032352 all species →	Domain	Arf GTPase-activating protein GIT1/2, coiled-coil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46097 all species →	G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007420 all species →	Biological Process	brain development	Interproscan
GO:0008277 all species →	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12487	GIT2; G protein-coupled receptor kinase interactor 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.