Gene detail

Detailed information of amic_s0086.g7.t1 in Acropora microphthalma

Genomic Location: sc0000086_pilon:112756...126919
NR annotation: XP_029180575.2, uncharacterized protein LOC114948171 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35643	AP-1 complex subunit beta-1 OS=Mus musculus OX=10090 GN=Ap1b1 PE=1 SV=2
P52303	AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1
P63009	AP-2 complex subunit beta OS=Bos taurus OX=9913 GN=AP2B1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002514 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09066 all species →	B2-adapt-app_C	Beta2-adaptin appendage, C-terminal sub-domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012295 all species →	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR011048 all species →	Homologous_superfamily	Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily	Interproscan
IPR051200 all species →	Family	Multi-functional host-pathogen interaction and enzymatic activity protein	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR015151 all species →	Domain	Beta-adaptin appendage, C-terminal subdomain	Interproscan
IPR009028 all species →	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47197 all species →	PROTEIN NIRF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0086.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.