Gene detail

Detailed information of amic_s0087.g12.t1 in Acropora microphthalma

Genomic Location: sc0000087_pilon:299166...317095
NR annotation: XP_015778667.1, PREDICTED: uncharacterized protein LOC107356579 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0087.g12.t1

ATGGGAAAGCTCAAATGTAAAAGGTACTGGCCAGAGAGTAAGGATGAAAAGCTCAAATTTGGTGGCTTAGATATATCATTGATCTCGGAAAACGTCTTGGGAGAAGGCTTTCTGATGAGAACAATGAAAATGAAGTCTGGCAAGGAGGAAATGATGGTTACGCAGTTGCAGTACACAGCATGGCCTGATCATGATGTTCCGAAGTCGGCGGAGCCTCTCATAGAAATGAATAAGACTCTCAGCAGTTTGCAAGGCAGCAAGAAACAACAAGTCTTGGTTCATTGTAGTGCGGGTTGTGGTAGAACAGGAACCATTTGTGCCGTGGATTATGCGTGGACTCTGCTAAAGATGCAAAAGACGGACAATTTCAGCGTGTTTGATATTGTGGCAAATCTAAGAAGACAAAGAATGGCAATGGTGCAGACCAAGGAACAGTACGCATTAGTTTATAAGGCTGTGGTATACCTTGTCCAAGAGGAATTAGAAAAGGACCAGATGAAAGGTCACACCTATGTGAATGTGCCTATTTCGCCGCCCCCGTTATCACCTCAAGAAGATTCAACTTACGAGAATTGCGAATTTTTGAGAAGTGTGGCTCGATGGCAACAGAGTGATAGGGATAATGGATCACTGCGCAAGTCACTGCCCACAGATCCGAAGGAAAATAAAAGCGATTTAAAACCAGCTGCAACAAATAAAGCAAGAGAAAGTTCAAGTGTTGCACCTGAAAGAACTAATGACTACGTTAATCTTGAATTTCCAAGCAGAAATGAAGCTAATAGTAGTCTTTCTCCGCATGCTCCAGCTGCGAAACCCATGGTTTCAGTAAAACCATCTTTTTTACAAGGAGATTCAAATAAAGCAGCTGTGAATTCTAATGCAATGAAAGGCGGAGTTACAAGCCCTCTTTTTGGTAGACAGCAAGCTCCTACGGTTTCTGATTATGAAATACTCCCGTCTAATGCTGGGCTCAAGTCAGGGAACGCGGGAATAGCCGCTCACAAAAATAAAGGATCAGCCGGGGATTATGAAATCCCAGCCCAGTCTGCGTCACTTGATAAGAAAGAGGCCAAGCACGTGCCAGAAGGTCTCTTAATTGACCTTGGAGATGACGCCACTCCATTGCCCAATAAAAGGCATTCAGTAGGCTCTGCTAGATATGAAAATGTTGCAGTTGCGGCAACAAGTTCTGCTGATGTCGACGATTGGTTATTGCTAAGCAACCTTGGTTTGCAAGTTCAGAAAGAAAGAAGTACAGGGAACGACAGCAAAGCTTTTCGCACGGTCCCAAACAGAGTGAAGCCATCGTCTGGTCCGAAACGCTCTCCTTTGAAGGAAAACTCTTTTGACGATTTCAGCACAAGCACTGAGAAAAGGGATGTGCAATCACCCACCAAGAGCATGGGAGAATATAGCCTCGTTGGTGCAGCCAGCCCGACCTCACATAGTGATGTAGAAAACCCTGCGTTTTTTGCACAGTTTGATCAAATCGCAGCATCTCAAAAGTCGAATCCATCGGACAAAAGTCTGCCAAAACAAGCTGAGAAGAGCAAAGGGCGACCCTCTGTGGGATCATATTGTTTGGTTGGGATCCCTGGGAGCGGGAATCAAGCTCCAATTGTAGTGCAATCGACACCGAACACGGATCTTAACAAGCAAAGTGCGGGTGTCAGTGGGAAAGACACTGGGAAACCTGTGGTGGAGCCTTCTTATGAACTAGTTGGACAATCCAGGCGGCCGCCAGAGAAAACGTCACCTAAACGACAAGCCGCAGGAAGTGCTCAAAGCACTGGTGACGCTGTGGAAGTTAACAGGAAGCCCAGTTCAGAACCCTTATCCCAAAATGTTCGACAAAAATTACAGCAGTCTGAACAAAGGGCACGATTGCCGCCTTATGTCAATACGCATGTGGGCTATTCAAAGGGCGTAAACGACGTCGCCTTTACGGAGGTTCTTAAACCAAAGATTGAAAACGACAACCCGGTTGATCTCAAAGAAAAAGTTCCTGAGTCGCTTGCACAATCTAGCAAAGAAGAAGCAAAACCTGTCACAGATATTTATGCTGTTGTTTCAAAGCAATCCAAAAGCACTGACATGCAGACAAAGTTTCCGGGCCAGTCAAGCAGCCTGAAGAGCTGTTCATCAACCTCTAGCGATGATTCACAAGACGTTCCGACAGTCCCTGAAAAGACCAACGAATCCTATCTTGTTGCAGGCGAAGATGCTTACGAGAACGTTGAACAGTCCGCCTCAAGGAGCACATTGGGCCGCTTCAAAAAGATAATAAAAAACACTTCCAAGGGTTCTATTCCAAAGCTTTTATCTGACTCTTTACCAAGCTCTTTGCAGTTTCCTATAGCAAGAAGCAACAGCTCTGGAAGCGGAGCTTCAGTGTCAAGACATTTTGGGGACCTCGGCTTCGGCAAACGGGTTGGTAACCCGAAAGGACCGCGGGCTCACCCACGTCACTGGCCGCAAATGAATTTGTGA

Transcript

amic_s0087.g12.t1

TCCGAGACTGAAATTGTCATTTTGTTTATAAAAATGCTCAGTTTGGTAGAGTGTGTCTTCAAAGTCGAATATTGAGAATGCGGATCTTTGAGAAATCGTGCCTGAAGTGACATAAACTATGAATTCTTCACGGATCCCCGAGGGATTACAGAAGTTTTTAGCGCACGCGGAAGGTCTTCACCCTTCGAACAACCCTACAAGAGAAAACGGCTTTGCTAAAGAATTCATGCAATTAAAGGCTCTGTCTACTCAACTCAAGAAGGAACCTGAATACAGCTCTAGGAATGGTGAACTAGAGTGTAATCGACCCAAAAACCGATATAAAGATATTTTGCCATTTGACTACAATCGGATTAAATTGCCTGCAATACATGGGATACAAGGGTCTGACTACATCAATGGAAATTATGTGAAGGGACCAGACGGCAACATATCCTACTTGGCTTTGCAAGGTCCTTTGCCAAAAACAGTCGATGATTTTTGGAGATTGATAGCTTCTCACAAATGCCAGATTGTAATTATGGTTTGCAAGGAAGTTGAAATGGGAAAGCTCAAATGTAAAAGGTACTGGCCAGAGAGTAAGGATGAAAAGCTCAAATTTGGTGGCTTAGATATATCATTGATCTCGGAAAACGTCTTGGGAGAAGGCTTTCTGATGAGAACAATGAAAATGAAGTCTGGCAAGGAGGAAATGATGGTTACGCAGTTGCAGTACACAGCATGGCCTGATCATGATGTTCCGAAGTCGGCGGAGCCTCTCATAGAAATGAATAAGACTCTCAGCAGTTTGCAAGGCAGCAAGAAACAACAAGTCTTGGTTCATTGTAGTGCGGGTTGTGGTAGAACAGGAACCATTTGTGCCGTGGATTATGCGTGGACTCTGCTAAAGATGCAAAAGACGGACAATTTCAGCGTGTTTGATATTGTGGCAAATCTAAGAAGACAAAGAATGGCAATGGTGCAGACCAAGGAACAGTACGCATTAGTTTATAAGGCTGTGGTATACCTTGTCCAAGAGGAATTAGAAAAGGACCAGATGAAAGGTCACACCTATGTGAATGTGCCTATTTCGCCGCCCCCGTTATCACCTCAAGAAGATTCAACTTACGAGAATTGCGAATTTTTGAGAAGTGTGGCTCGATGGCAACAGAGTGATAGGGATAATGGATCACTGCGCAAGTCACTGCCCACAGATCCGAAGGAAAATAAAAGCGATTTAAAACCAGCTGCAACAAATAAAGCAAGAGAAAGTTCAAGTGTTGCACCTGAAAGAACTAATGACTACGTTAATCTTGAATTTCCAAGCAGAAATGAAGCTAATAGTAGTCTTTCTCCGCATGCTCCAGCTGCGAAACCCATGGTTTCAGTAAAACCATCTTTTTTACAAGGAGATTCAAATAAAGCAGCTGTGAATTCTAATGCAATGAAAGGCGGAGTTACAAGCCCTCTTTTTGGTAGACAGCAAGCTCCTACGGTTTCTGATTATGAAATACTCCCGTCTAATGCTGGGCTCAAGTCAGGGAACGCGGGAATAGCCGCTCACAAAAATAAAGGATCAGCCGGGGATTATGAAATCCCAGCCCAGTCTGCGTCACTTGATAAGAAAGAGGCCAAGCACGTGCCAGAAGGTCTCTTAATTGACCTTGGAGATGACGCCACTCCATTGCCCAATAAAAGGCATTCAGTAGGCTCTGCTAGATATGAAAATGTTGCAGTTGCGGCAACAAGTTCTGCTGATGTCGACGATTGGTTATTGCTAAGCAACCTTGGTTTGCAAGTTCAGAAAGAAAGAAGTACAGGGAACGACAGCAAAGCTTTTCGCACGGTCCCAAACAGAGTGAAGCCATCGTCTGGTCCGAAACGCTCTCCTTTGAAGGAAAACTCTTTTGACGATTTCAGCACAAGCACTGAGAAAAGGGATGTGCAATCACCCACCAAGAGCATGGGAGAATATAGCCTCGTTGGTGCAGCCAGCCCGACCTCACATAGTGATGTAGAAAACCCTGCGTTTTTTGCACAGTTTGATCAAATCGCAGCATCTCAAAAGTCGAATCCATCGGACAAAAGTCTGCCAAAACAAGCTGAGAAGAGCAAAGGGCGACCCTCTGTGGGATCATATTGTTTGGTTGGGATCCCTGGGAGCGGGAATCAAGCTCCAATTGTAGTGCAATCGACACCGAACACGGATCTTAACAAGCAAAGTGCGGGTGTCAGTGGGAAAGACACTGGGAAACCTGTGGTGGAGCCTTCTTATGAACTAGTTGGACAATCCAGGCGGCCGCCAGAGAAAACGTCACCTAAACGACAAGCCGCAGGAAGTGCTCAAAGCACTGGTGACGCTGTGGAAGTTAACAGGAAGCCCAGTTCAGAACCCTTATCCCAAAATGTTCGACAAAAATTACAGCAGTCTGAACAAAGGGCACGATTGCCGCCTTATGTCAATACGCATGTGGGCTATTCAAAGGGCGTAAACGACGTCGCCTTTACGGAGGTTCTTAAACCAAAGATTGAAAACGACAACCCGGTTGATCTCAAAGAAAAAGTTCCTGAGTCGCTTGCACAATCTAGCAAAGAAGAAGCAAAACCTGTCACAGATATTTATGCTGTTGTTTCAAAGCAATCCAAAAGCACTGACATGCAGACAAAGTTTCCGGGCCAGTCAAGCAGCCTGAAGAGCTGTTCATCAACCTCTAGCGATGATTCACAAGACGTTCCGACAGTCCCTGAAAAGACCAACGAATCCTATCTTGTTGCAGGCGAAGATGCTTACGAGAACGTTGAACAGTCCGCCTCAAGGAGCACATTGGGCCGCTTCAAAAAGATAATAAAAAACACTTCCAAGGGTTCTATTCCAAAGCTTTTATCTGACTCTTTACCAAGCTCTTTGCAGTTTCCTATAGCAAGAAGCAACAGCTCTGGAAGCGGAGCTTCAGTGTCAAGACATTTTGGGGACCTCGGCTTCGGCAAACGGGTTGGTAACCCGAAAGGACCGCGGGCTCACCCACGTCACTGGCCGCAAATGAATTTGTGAGAAAAAAAATTTCAGTCATATTTTATATAAATATATAGGCTTTCGTGATATTGAATCCTGAACGAGACACACTAACGGTCTGAAAAACCAGTAAAGTAAAGGAGATTTtaacgtgatgtattgcacgtgcagcacgattatttttctgcattcaaccaatcacatcattggtttgtggtgttgacgttgtcgttgtcttggtgattttcttaaactccctTTTGGAAGACAAATACGCCTTTTCCCTTAGTTATGATTACAAAAGCTGTTTTAACTTCGACCACAAAGTATATACGCAATCGCCCCTGAAGTTTTGTTTCCTAAAAGAGGGCATGGATATACGGATGGCTTATCATCAAGACAGCTGTTGGTGACAAAACACTCGATCAGTGCATGCAATAGTTTGATTTTTAACGTGCGTAAGATCGAGGAGTGGTAGTTCCATTACCTCTGAGAGACACTTTTTTTTGTGCTCACAACTTGCCTTTAAACTGTATGCTCGAGGGTCAGTTATTAGGTGGGTATGAGCTTCTACTTTCAATTTGTTAACATCGCTTTCTAGATTTTATGAATATCTTTTCTTCTTTTGCACATTATTGACCAATTTTTTACTAAAGTATGAAAACATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2R2	Tyrosine-protein phosphatase non-receptor type 22 OS=Homo sapiens OX=9606 GN=PTPN22 PE=1 SV=2
P29352	Tyrosine-protein phosphatase non-receptor type 22 OS=Mus musculus OX=10090 GN=Ptpn22 PE=1 SV=1
Q99952	Tyrosine-protein phosphatase non-receptor type 18 OS=Homo sapiens OX=9606 GN=PTPN18 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004398 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR047170 all species →	Family	Tyrosine-protein phosphatase non-receptor type 12/18/22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45983 all species →	TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0004726 all species →	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035335 all species →	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18024	PTPN12_18_22; tyrosine-protein phosphatase non-receptor type 12/18/22	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.