Detailed information of amic_s0087.g40.t1 in Acropora microphthalma

Genomic Location: sc0000087_pilon:640656...684705
NR annotation: XP_029204848.2, C-type lectin domain family 4 member D-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P16112Aggrecan core protein OS=Homo sapiens OX=9606 GN=ACAN PE=1 SV=3
Q29011Aggrecan core protein OS=Sus scrofa OX=9823 GN=ACAN PE=1 SV=4
P07898Aggrecan core protein OS=Gallus gallus OX=9031 GN=ACAN PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002695 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00059
all species →		Lectin_CLectin C-type domainDomainInterproscan
PF00024
all species →		PAN_1PAN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003609
all species →		DomainPAN/Apple domainInterproscan
IPR016187
all species →		Homologous_superfamilyC-type lectin foldInterproscan
IPR016186
all species →		Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR001304
all species →		DomainC-type lectin-likeInterproscan
IPR050801
all species →		FamilyCalcium-Dependent Lectins in Immunity and DevelopmentInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22801
all species →		LITHOSTATHINEInterproscan

 Gene Ontology
No Gene Ontology signature was detected for amic_s0087.g40.t1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0087.g40.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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