Gene detail

Detailed information of amic_s0087.g48.t1 in Acropora microphthalma

Genomic Location: sc0000087_pilon:795656...805006
NR annotation: XP_029212769.2, succinate-semialdehyde dehydrogenase, mitochondrial-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0087.g48.t1

AGTCTGAGAGATTTTCAAGATGGCGGCCGGTTTTTACAGGAAGTAAACTTTTCAGCGATTTTTAGGTCCAAGAGAAAGGCAGCAATTCCGTGTATAGCAATGCAATTTGTTCGAAGGATGTCTCTTTTTCAAAGTAGTGGTTTTATCGGTGGCAAATGGAGAGACTGCGTCGCAAAATTTCCCGTTTACAATCCTGCCACGGGAGAAGAAATTGGCAGGGTGTCTGATATGGGACGAAGTGATGCTGACGAAGCCGTCAATCAAGCTTATGAAGCATTCAGATCGTGGAAGAATACAACAGCAAATGAGCGCAGCAAGATGCTTCGAAAATGGTACGAGCTCATTGTAAAACATGAAGATGAGCTGGCCAAGTTGTTGACTCTAGAGCAAGGAAAACCTTTGTTTGAAGCAAAAGGTGAAGTCAAGTATGGAGCAAGCTTTGTGGAATGGTTTGCTGAGGAAGCAAAGAGAATATGCGGTGATATTATTGCTTCACCAAGTCCTTCTAGACGATTGTTTGTACTCAAACAGCCTGTTGGTGTAGCAGCACTTTGGACACCATGGAATTTTCCCATTGCAATGATCACTCGCAAAGCAGCAGCAGCACTTGCTGCGGGGTGCACAGTGATTATCAAACCATCAGAAGAAACACCTTATTGTGCTTTGGCATTACAGAAGCTGGCAGAGGATGCAGGGTTTCCTCCTGGTGTTGTCAACACAATTCCTTGTTCGCGTGATAAAGTGAATCAAGTTGCAGATGCAATCCTTGGAAATGAGTTGGTTTCCAAATTATCATTTACAGGATCTACAGCCACTGGGAAGCTCTTAATGTCCAAGTGTGTTGATACTGTAAAGAGAGTTTCCCTCGAACTTGGAGGACATGCACCCTTCATCGTATTTGATTCCGCAAATGTTGATGCTGCCGTCGGCGGAGCGATAACAGCTAAGTTTAGACACACTGCTCAGACTTGTATTTGTGCCAATAGAATTTTAGTTCAAGACAAAATTTATGATGAGTTTGCTTCCAAGTTTGCTGAAGAAGTAGACAAGCAGTTGAAAGTTGGTAATGGTATGGAAGCATCTTCCACTCAAGGGCCACTGATAAATGAAAAAGCTGTTGAAAAAGTGGAAAGCCACATAAATGATGCTTTGACAAAAGGTGCTGTTTGCTTACGTGGAGGTAAGCGGCATGAACTTGGGGGCAATTTCTTTCAACCAACAATTCTGACAGAAGTGACACCTGACATGATAATCTGCAAGCAAGAAACATTTGGACCTGTTGCACCTCTAATAAGATTCAAATCTGAGGATGAGGCAGTTGCAGTCGCTAATAATACTTCTGCTGGATTAGCAGGATACTTCTACTCGCAAGATATCAGTCAGATCTGGCGTGTGGCTGAAGCCATGGACGTGGGTTTGGTTGGTGTTAACGAGGGCGTAATTTCTTCAGAGGTAGCTCCATTCGGAGGCTGGAAGCAGTCAGGTTTAGGAAGAGAGGGGTCCAAGTATGGTATTGAGGAATACCTTGAGATGAAGTATATATGCCTGGGGGGAATCAACCAGGCTTAAAGGGAAAAGGCTCCAAACAAAGAAAAATACATAGGTTCTTATTTTGAAACATGGACTGCAATAAGCTTGACAAGACTGTCAAGAATGATAATAAACTTGATCGTCACATTTTTAGACAATGTAAATTGCAATGAAAAGAACACCTAAGGGGAAAGGTTATTGACAACAACTTGACTATCACCTTTTTAGACAAATAACAATGAAAAGAATATCTTAGATGGACCACTATTGACTTGCTTGATGGAGAAAATATAAAACCAATGGGTAATAATTAGAAAAGAGTGAACTAAAAATACACCTCACATGTTACTTTTGTCTGTCTGCTTAACATTTTAAACAATTTGAATGAAATTTACTTTGGTGTTTGTTAAGTCTGATGAATGAAGAAAATCACAAAAAAAAGGAAAAAAAATATCATTAGAAGGGAAAGTAAGTTTTGCAGAAAACACATCAAAGTATCCAGTGCTCTTATTGTGAGCCCAGACTATTTCTATCTGGGGCCAAGAAATATACTTCCACATTGGCAGTATAGTTTAATTAAAAATAATTCATGTCTCTAGCACATTGGAAACAATATGAAAGTGACAATCTGCAAGTAGACTTCCATTTCTACCAGCAAGCAATAGTACGGTAACACATACCGGTAATAATTATTTTATAGAGCACACAACAGACTATGTCAGGTCTACATAATAATCCTATTGCACCCTTCACAATTATTTTTATTGATAGCTAGGATGAATTTGAAATAAATAAAATGGCTTTTCCATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51650	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Aldh5a1 PE=1 SV=2
Q8BWF0	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Aldh5a1 PE=1 SV=1
Q3MSM3	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar OX=9580 GN=ALDH5A1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR050740 all species →	Family	Aldehyde Dehydrogenase Superfamily	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43353 all species →	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004777 all species →	Molecular Function	succinate-semialdehyde dehydrogenase (NAD+) activity	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009450 all species →	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0087.g48.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.