Gene detail

Detailed information of amic_s0087.g48.t2 in Acropora microphthalma

Genomic Location: sc0000087_pilon:795656...805006
NR annotation: XP_029212769.2, succinate-semialdehyde dehydrogenase, mitochondrial-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0087.g48.t2

AGTCTGAGAGATTTTCAAGATGGCGGCCGGTTTTTACAGGAAGTAAACTTTTCAGCGATTTTTAGGTCCAAGAGAAAGGCAGCAATTCCGTGTATAGCAATGCAATTTGTTCGAAGGATGTCTCTTTTTCAAAGTAGTGGTTTTATCGGTGGCAAATGGAGAGACTGCGTCGCAAAATTTCCCGTTTACAATCCTGCCACGGGAGAAGAAATTGGCAGGGTGTCTGATATGGGACGAAGTGATGCTGACGAAGCCGTCAATCAAGCTTATGAAGCATTCAGATCGTGGAAGAATACAACAGCAAATGAGCGCAGCAAGATGCTTCGAAAATGGTACGAGCTCATTGTAAAACATGAAGATGAGCTGGCCAAGTTGTTGACTCTAGAGCAAGGAAAACCTTTGTTTGAAGCAAAAGGTGAAGTCAAGTATGGAGCAAGCTTTGTGGAATGGTTTGCTGAGGAAGCAAAGAGAATATGCGGTGATATTATTGCTTCACCAAGTCCTTCTAGACGATTGTTTGTACTCAAACAGCCTGTTGGTGTAGCAGCACTTTGGACACCATGGAATTTTCCCATTGCAATGATCACTCGCAAAGCAGCAGCAGCACTTGCTGCGGGGTGCACAGTGATTATCAAACCATCAGAAGAAACACCTTATTGTGCTTTGGCATTACAGAAGCTGGCAGAGGATGCAGGGTTTCCTCCTGGTGTTGTCAACACAATTCCTTGTTCGCGTGATAAAGTGAATCAAGTTGCAGATGCAATCCTTGGAAATGAGTTGGTTTCCAAATTATCATTTACAGGATCTACAGCCACTGGGAAGCTCTTAATGTCCAAGTGTGTTGATACTGTAAAGAGAGTTTCCCTCGAACTTGGAGGACATGCACCCTTCATCGTATTTGATTCCGCAAATGTTGATGCTGCCGTCGGCGGAGCGATAACAGCTAAGTTTAGACACACTGCTCAGACTTGTATTTGTGCCAATAGAATTTTAGTTCAAGACAAAATTTATGATGAGTTTGCTTCCAAGTTTGCTGAAGAAGTAGACAAGCAGTTGAAAGTTGGTAATGGTATGGAAGCATCTTCCACTCAAGGGCCACTGATAAATGAAAAAGCTGTTGAAAAAGTGGAAAGCCACATAAATGATGCTTTGACAAAAGGTGCTGTTTGCTTACGTGGAGGTAAGCGGCATGAACTTGGGGGCAATTTCTTTCAACCAACAATTCTGACAGAAGTGACACCTGACATGATAATCTGCAAGCAAGAAACATTTGGACCTGTTGCACCTCTAATAAGaatagaACTTGGGGGCAATTTCTTTCAACCAACAATTCTGACAGAAGTGACACCTGACATGATAATCTGCAAGCAAGAAACATTTGGACCTGTTGCGCCTCTAATAAGATTCAAATCTGAGGATGAGGCAGTTGCAGTCGCTAATAATACTTCTGCTGGATTAGCAGGATACTTCTACTCGCAAGATATCAGTCAGATCTGGCGTGTGGCTGAAGCCATGGACGTGGGTTTGGTTGGTGTTAACGAGGGCGTAATTTCTTCAGAGGTAGCTCCATTCGGAGGCTGGAAGCAGTCAGGTTTAGGAAGAGAGGGGTCCAAGTATGGTATTGAGGAATACCTTGAGATGAAGTATATATGCCTGGGGGGAATCAACCAGGCTTAAAGGGAAAAGGCTCCAAACAAAGAAAAATACATAGGTTCTTATTTTGAAACATGGACTGCAATAAGCTTGACAAGACTGTCAAGAATGATAATAAACTTGATCGTCACATTTTTAGACAATGTAAATTGCAATGAAAAGAACACCTAAGGGGAAAGGTTATTGACAACAACTTGACTATCACCTTTTTAGACAAATAACAATGAAAAGAATATCTTAGATGGACCACTATTGACTTGCTTGATGGAGAAAATATAAAACCAATGGGTAATAATTAGAAAAGAGTGAACTAAAAATACACCTCACATGTTACTTTTGTCTGTCTGCTTAACATTTTAAACAATTTGAATGAAATTTACTTTGGTGTTTGTTAAGTCTGATGAATGAAGAAAATCACAAAAAAAAGGAAAAAAAATATCATTAGAAGGGAAAGTAAGTTTTGCAGAAAACACATCAAAGTATCCAGTGCTCTTATTGTGAGCCCAGACTATTTCTATCTGGGGCCAAGAAATATACTTCCACATTGGCAGTATAGTTTAATTAAAAATAATTCATGTCTCTAGCACATTGGAAACAATATGAAAGTGACAATCTGCAAGTAGACTTCCATTTCTACCAGCAAGCAATAGTACGGTAACACATACCGGTAATAATTATTTTATAGAGCACACAACAGACTATGTCAGGTCTACATAATAATCCTATTGCACCCTTCACAATTATTTTTATTGATAGCTAGGATGAATTTGAAATAAATAAAATGGCTTTTCCATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51650	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Aldh5a1 PE=1 SV=2
Q8BWF0	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Aldh5a1 PE=1 SV=1
Q3MSM3	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar OX=9580 GN=ALDH5A1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR050740 all species →	Family	Aldehyde Dehydrogenase Superfamily	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43353 all species →	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0004777 all species →	Molecular Function	succinate-semialdehyde dehydrogenase (NAD+) activity	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009450 all species →	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17761	SSADH; succinate-semialdehyde dehydrogenase, mitochondrial	EC:1.2.1.24	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.