Gene detail

Detailed information of amic_s0087.g55.t1 in Acropora microphthalma

Genomic Location: sc0000087_pilon:891053...899001
NR annotation: XP_015771815.1, PREDICTED: ubiquitin-conjugating enzyme E2 H isoform X1 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0087.g55.t1

CGTATTTACTCCCCATTGGTTAATAGTGGCACTCGATTTATTATTGgttttcattcacgtgaggagaccaccatgttggtgttcaaaacaatagcaaaatgtcgctcaagttttacataacaatagaatcaaattcgcaaaagactttttgccctattgttctgtacagcaacatggccgccgtgacgtcacatgaaaaccgaTATTTAACCAATAAAACAGCCGTTACAACTGATTTGCGCAATTGCGCGACAACAGACAACGTCATCACGAAGTTAGATTGACGTGTTTGGTTTCGTGATGACACTATTACCTTGCGCCGAGTTCTATATTGCTAGAAAAACGCACTGAAAGAAATAAATGTAATAGGTCCTTATCACGGCAACGGTGGCCGTTTATTTGTAAATGATTTCGGTCATTTCTTTGTTATTATCTTTCTTCTCTGGCTTAAAAATACCATGTTATTTTAACCCAGTTGATATAACAATAAAACAAAGTTTGCAGTCTGGAAAAATTGGGTATTAAAGGGATAATTCTTGAGCTTCAATAACGCTCAAAAAGTCTTGGAACTTCATCATGATTCCTTTTAAAATCGATCCTTGAATTTTGGACAATGTCTTTTGCGTTGCTTTCGTTTCCGGGAATGTAAACGCGAGCCAGGAAAGCACGCACTTTCATTGACCCTGCGGTGTGACCATTAACTTTCTCATGGGTACAAAGCACTATTTATTTACTTTCGCAACACGTGACTGGAGAGACATGAATCTCACGTGATCACAATAACAATGTTACGTCAACAAACCAACAAAGAAAGTCCGGAGTCGTCCATTGTTGTCGTATAGCGAAGGCTGAAAGTAGAAAGTGGTTTTCGTCTGTTGGACGGACAGCATGTCGTCGCCGTCACCTGGAAAGAGACGAATGGATACTGATGTTATAAAACTAATCGAAAGCAAGCACGAAGTGACCATACTTGGGGGATTAAACGAGTTTATTGTGAAATTCTTTGGGCCAAGTGGAAGTCTTTATGAAGGAGGAGTTTGGAAGGTGCGAGTTGATCTACCAGAAAAATATCCATTCAAGTCCCCCTCCATAGGTTTTATCAACAAGATTTTTCACCCAAACATAGATGAAGCTTCTGGTACAGTTTGCCTTGATGTCATTAATCAGGCTTGGACTGCACTTTATGATCTGTCAAATATTTTTGAGTCGTTTCTGCCTCAACTGTTATCCTATCCTAATCCTGTGGATCCCCTTAATGGAGACGCAGCAGCCCTTTACCTTCACAAACCAGAACAATACAAGGCAAAAATTCAAGAATACATTAGAAAATATGCAACAGAAGAAGTGTTGAAAGATCAAGAGGAGATGTCTTCATCAAGCGAAAGCTCGATTAGTGACTTTTCAGAAGATGAGGTTCAAGATATGGAACTCTGACACACAATGACCATCTTTTGTATGTAACTAGAATGATAAATAGCTCTTATTATTAGTTAAATATTATAGGTATGATAATACAAGTTGGGGTTGGGTTTTGGTATCTTCTCTAGAACCTTAACAACTTTTCTAATTTTCTATGATTTCTTGCTTGGTGCTGGTATTGGGGTAAAAAATATATATTTCAAGCAAAGTAATGATGATCTAACTCAATTAATCAACACATATTTAAACTCTAGATGAGGACTGTTTCTGCCGTTAGAATGTCTTTACTTCAAACTCCACCTCTTGTAATTTTCCTGTTCTCATATTTACTGCAGTAATAATTTTTGTTGTGAACGTACCATAATTTATTAACTTAATGGTGGGTAATAGTTTGCCAAATATTTTTATTCCAATTGATAATATAATTTTTTTTCATGATGGCAACATCTTTATTTGAGGAAATGAAAACTGTCCATTCATTGTCTGTGTCAAACAGTGCAAACTTTTCTTGTCAAACAGGTTTTCTTTTGTTAATCTTTGAGAAATTTTACAGATGAAGCCTTTCTGATGACACGTGAATCGACAGATTTCACAGAAAACTTTCGGTATTGAGAATATGGCAAAAAGGTATTCTTCTTTTATGAGTGGAAAAAGGATTTTAACTATTATGGGAAGGAGTTGAAACATAGTTACTCTtttctttcttcattcctttctttctattttctCCCTGTCAAATATCTCATAATATTTAGTGATGAAGATACCACAGCTTAACCAATTATTAAGTTTAAAATGTATCAATATCATTGTATATTATTGAAAGGAGCTCAAGCAATGTAAATTTGTACTTTTCAGTACTCATAAATGACATATTAACACGTTTCTTGAGATTGACACATGAGCAGTTAGGAAGACCAATTAGGTTTTTGCCTTTAGTAGTTCATTCTGGTACCAACCCCACTCACCTCAGCCTCTCTCACGTTGAAGAGACATAAGCTCCCAGTTTTATTTTTATTGAAGGTGTTAGTTATTGTGGCAAATAACTTGAAAAGTGAAGTTTTCATTTCTGTTTGCTCAAGAAGTTTTGTGGCTGTGTTTGTATTTTTTTTTTCCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32LN1	Ubiquitin-conjugating enzyme E2 H OS=Bos taurus OX=9913 GN=UBE2H PE=2 SV=1
P62256	Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens OX=9606 GN=UBE2H PE=1 SV=1
P62257	Ubiquitin-conjugating enzyme E2 H OS=Mus musculus OX=10090 GN=Ube2h PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008555 (this species only)
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR023313 all species →	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24068 all species →	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061631 all species →	Molecular Function	ubiquitin conjugating enzyme activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10576	UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H	EC:2.3.2.23	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.