Gene detail

Detailed information of amic_s0088.g32.t1 in Acropora microphthalma

Genomic Location: sc0000088_pilon:474546...480727
NR annotation: XP_029180356.2, 39S ribosomal protein L11, mitochondrial-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0088.g32.t1

AAAGAGTCTAAAAGCAAGGTCACCGTCCCGCACTGCGAGTAACCTCTAATTTCGGCGAGCGTGATGGGGCGGGCAAAATACACGCGCACGCGAGAGAAACTCGGGGGACATAGCGACTCGAGGGGAACGCCGAAACTCCTCGCGTCGCGTATCCTCCGATTCCTGCTTTCACTTTTGTAGAGAGAGACAACCAGGCAGCTCTCATAGGTGGGAAGGAGCTGGGAAGACATTGGGAACGAGAGAAATGTAGCTGGCCTGAGGTGGCCTGGGAATCGTTTTGAAGCAACTTCAAGATGGCGGCCAAGCAGGTGAGCGGTTTTCTTCGAACGTTCGTCGGAGCTGGTAAAGCTTCTCCATCTCCGCCGTTGGGGCCATCGCTTGGGCAGCGGGGAGTGAACATTGCTCAGTTCTGTAAGGAGTTCAATGATCGCACAAAACACATCATTGCTGGTGTTCCTGTCCCAACAGTGATCCATTACAAGTCGAACTGTTGTGAAGTACCCTTCCCTTCCCCCGTTCCCCCTTTCCCTTTGTTCCCCACCCAACTGGCTGAATACAGGAAGAGAGATTTGTGGCACAGTTACCTTAAAACAGGTCTATGAAATCGCCAAGATCAAAAAGCGAGATGCAACGTGCAAAAATGTTCCCCTAAGAAGCGTTTGTAGATCTGTCATCGGATCAGCCAGAAGCATGGGTATTCAAGTTGTTCCAGGGAGGGACAATGACATGTAGTGTCCCGAGGGTTGTTGGCTTTTGCGTAAAAAGAGGACCAATTTAAAGTTGACGCATTTGGGAAGAAAGATCGTCATTCAGCGTTAAAGAGCCAACCATTCGGCGATGCTCAATTTTGGCGTTAAAATCATGACAAACGACGACAAATCGGCTTGTTTGTCACTGAGAATTGAAGCTCAGAGAGTCTGGATGGTCATTCAGCGATATACGCGGTGGGCTACATCAGCTAATGCATAATTAAATGTTTCGGTGATGGTTAGGGAAAAATTCGAGTGCTATGGAGCGGTTGAAACTAAGCTAGAAAGcctttactaaaaaggattttgcgggtgattggagccatgagaaggactgttgtttgcgactgacctttcgacaacctgtgtggaagccatctttagagtcacttgactctgaacatggcttccgcacaggttgtcgaaacgtcagtcgcaaacaacagcccttctctgaggactccaatcacccagatcatgatgatctttttcaatcaaggtatgttactcctgggttcaagccattttcgtatTTCAGCTAGAAACCTTCCTCTTCGACAACTCTATACGTTGCTCTCTATTGTTAAATGCTTGTATTTGAAGTTGACGGGTCATTCTCTAACAAGGTGACATTAATTGAGCTCTTGTGACTGGTTCTGGTTAGGATGAAAGTCAGTTCAATGAAAGTTATATATAATTTTTCACATGAGCGTGAAAAATTGCGTGATTTCAACTTCGCAGCTGTCTGATGGCTCCCATCAGTCTAGCTTGCCTTTATAAACTATAAACGTTTTTTCCTGAGGGTGTTGTTTTTCATACTAAAAAACAAAACTTGTAAAATAGATCAGGTTTTAAATGACTGTCGAAAGTAAGAAAGCGATTGCAATAGCAAAGCGCGCAAGTGACACCATGACTCGGACAAAACTCAGACAAACAAACCGGAATGGCGGACGATTTTTCTAAAACACTTTCTAAAACAGCCGGTGTTCCTGAAACATATTTTTCAAACGAAAACATTGCCTAGCTTTCCTCTAGTTCTCTGAGATCGCGCTAGTGTTGTATGAGCTTCGTCGGGGATATCATCATTTGCATTCTATTTTTAGGCTTCGTACGCTTCGTTATTGCTGCGCTCAGTGATTGGCATAAAAATCTCGCGCCATTTTCCCAACCAGTCAGAGGCAAAACCCCAACCAATGGCACCTTGTATTCGCAATTGCTCACGGCTCTGTAAGCAATTTTCGTTTCGTGTAAGTGGGCCTCTAGGCTCCGTGAGAATCGAAAATCGGAGTCACCATCAAAGTCAAAGTTGAGAAAATCGGAGAAGGGAGAATCGCAATGGTTCTATTTTCTTCCGATTCCGCTTAAAACTCCGTCGTTTAGTGAAAACGTTTTTGTCGGAGTAGCAAGCAGATGAGAAAAAGGGCCATTAGTatttgtcggaactggccagccacatcggcaagcccggaaatgaagcgtatcagtcatgccgaactgagagctgtttttatcaatattgaccttgctcttcaagtatgaactatttgggaatgagGgggtctcacaattcggCaaaactgacgcgttccatttgcggacaGgcagatccggtcagccagttctgacaaacggAACGCGCCCGAAGATACAGTAATCATCTGTGCTCTGGCGTCTTTAGTGCAAGCTATGTAAAACTATAAGCAAACGCTAACAGAATCTTAAGGATAAGATCATGGTGGAGACCCTATGCTATTCGTGCGTAAGCAAGGTGCACGGTTTTTCATTCTCAAGTATCTAATATTGTATTCGTTCTTTTCTAATAAAGTTTCTAATGAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0ABI6	Large ribosomal subunit protein uL11 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplK PE=3 SV=1
Q5FTX3	Large ribosomal subunit protein uL11 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rplK PE=3 SV=1
B0T065	Large ribosomal subunit protein uL11 OS=Caulobacter sp. (strain K31) OX=366602 GN=rplK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03946 all species →	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036796 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Interproscan
IPR000911 all species →	Family	Ribosomal protein uL11	Interproscan
IPR020784 all species →	Domain	Large ribosomal subunit protein uL11, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11661 all species →	60S RIBOSOMAL PROTEIN L12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0070180 all species →	Molecular Function	large ribosomal subunit rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0088.g32.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.