Gene detail

Detailed information of amic_s0088.g4.t1 in Acropora microphthalma

Genomic Location: sc0000088_pilon:85451...92375
NR annotation: XP_029203120.2, uncharacterized protein LOC114967269 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0088.g4.t1

CCTGCGTGGCTTTATTGCACAGGTACAGCTATAGAAAATGCCCTCTATATCTTTTTTACAACAATTGCAACAGTATTAAGGAGTTTCACGAGGAAGTATGGTTTTTACTGCAGCGAAGCTTATTTGCGGCGTTCCAGCCTATACAACAAGATGGCAGATGATACGGTTGAAAATGTAGAAGACTTCAAAGGCAACGTCAATGCCAATCCTCCTGAACAGAAGCAGACGAAATCCGTTGGCACAAAGAGTAGTTCAACAACTAAAAGAAAATCTTGCATCGAAGTGAGTTCCTCGTTCGTTCGGAATGTTTGGTTCGCGACACAATGTATTCTTTGCCATGTACTCTTGCTTGTTGTAACAATACCGCTGGCGCCTTTGATGATGCTGTTTTACCTGCTAAAGGCAACGGAGCGTTTTATAGTCAAGATGCGATCCGGTAAAATTGCGTTATCTCCTTTTGATGCAATATGGGCTCCGCGCAACGCCGATGATAAGCAACTGATTATCAGTTCGCTGATTTGCTTTGAGAATGATGGGAATTTTGAAGACGGAGTGCAAAGGATTCGTGACGCCATGTTAGAACGTTTGGTAGAAGCAAGAAAAGACTTGGGAATGCTACTGTATCCGAGGGCGCGGTGTTACATTCAACCGGGTTTGTTCCAGTTCTTCTTTGTGGAAGACCACTCCTTTTCGATCGATAATCACGTGTTTACATGGAAAGGAAAGGTGCCGTGTTCCAAAGACGAGTTATCCGAGGTGGTTTCTACTATCATCAATGAGCCTCTGGCTGAGGATCGACCTCTGTGGTGTTGCTGCTGTATACAAACTAACTTTGGTGACAATGACCTTGCTTTGGTGTTTAGAATGCATCATTCTCTTGCGGATGGAATTGCGCTGATTCAGTTCCTCATTCATCAACTTGCAGATAAGCTGACGTTACAAGTAAGCCCCCAAAGCTATTCCTCGACATTCCGGTTTCCTCTCCTGGCTAAAGCTGCGCTGATTGCACCCCGATACCTGCTCAAGTTGCAATTCAGGTCTACCGACAGTAACCTCCTTCATGGACCTGACCTCAGGGGCGAGAAGAAAGTTGCTTGGAGCGACCCAATTGATCTCAAATTGATCAAAGAAATCAAAGCAGCTACGGGAACAACGGTCAACGATGTCTTAATGTCTTGCCTTTCCCTTGCAGTAAGGAGATACCTCCAGAGAAAAGGCGTTGAAGATCCCAGCGACATCACGGCCGCCGTTCCCGTAAATGTCCGAACATCAGTTCTGTCCGAGAAACTTGCCATGGATAACAAGTTTGCGTTTATTTTCCCGAGATTAGCAGTAGGAACCGAAGGAGTTTTAAGCCAGTTATACGAGACGAAGATACGAATGGACAAAGCCAAAACTTCTGGAGAGCCAATCGCTTCGGCTACAGTCTTTTCGATTTCTAATGGACTGTATCCAGATTGTTTAACGTCCAAATCCAACGCAAAGCTGGGAAGAAAACCAACTTGTATTCTATCGAATATCCGAGGTCCTCAGAAAATGCTCTCTGTACGGGGCAGTCGCGTTAAATACCTAGTATTTTGGCCTCCGCATAAGGAAAACCTTGGCACCACGCTCTCCGTCTTTACATATTCAGGAAAAGTTTTTGTTGGAGTTCAAGGCGACATCGCTGTGCTTTCGGACCCTGAGTTGATTGTAGAAGAGTTTGGAAAAGCCGTCAATGAGATGACAAAATGTGTTCTGGAAACCACAGGCTTCGCTAGCGAAGGATACCAAACCTAGCTGACCGTTTTTTAAACAGCGCTGAAGAGCTAGCGGGTTACAATTTGTATGAACCAATGCCGTATTTTACAGTTTAATATCGCATAGTTTGGTTATTTTTTCAAAAGTTCTGCAAGCTTTTCTGTGCGTAaagGTCAAAAATGTGAAACTCAACAAGCTACGAAACTAAACGCAAAAAACTCATGTTTTCCTAGTCAAACACAGCACAGTGACAAATAACCACACAGTTGCACATTAAATATTACAATATTGCATTATTTTTGCTTTTACCTGGAATATAGCTTTAGCAACAAGAGGAATTATCTTAAATTTATAGGAATCTCCGCCTTCTATGAAGCAGTGTATAGCAGCACACAAAATACTCATGCTTGCATGCATTTTCAAAAtattcatatatttaacaattattccatgagcgcgcgttggttatgagatgatagatagccaatgaggcgcgtagccccgagttggATATAATCGTCTCATATCCAACAAGCGCGCGTGGAAAAATTTTTTTATTACAAACGCCCCCAAGATATTAGACAAAACTTCTCGACTTTAATTTGTGAGAAGAAACCGGATGTCACAATGTACATATTTTTTTCCCGCGCGGCTAAACTGGGAAACATTTGCATCCGTAACAATGTTTCCGCAGCAATGTTTCCTAGTTTAGCCAGGCCTTAAAAGTTCAATGAGTTCCTTTTCATTCAACTCCGGTGCGAAGCGATTTTCGCCGGCCGCCGTCGTTTCTTGAGGGAAAATTTTTTAGCTCCTTTTTAAATTTAAGCTGACACATACGCTTACCATATTTGGAGATTATGATGTATTGGCTCATATACCTTAATGGCTAAGCCAATAAAAAGTCTTGAATTGCATTATCCAATGGTCCAGTTTTTAATAAATGATAATATACTTGCACtttcttatttaccaAATTCTAGTAATGATTAATTATTAAATAGTGTGCACCTAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000800 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06974 all species →	WS_DGAT_C	WS/DGAT C-terminal domain	Domain	Interproscan
PF03007 all species →	WS_DGAT_cat	Wax ester synthase/diacylglycerol acyltransferase catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045034 all species →	Family	O-acyltransferase WSD1-like	Interproscan
IPR009721 all species →	Domain	O-acyltransferase WSD1, C-terminal	Interproscan
IPR004255 all species →	Domain	O-acyltransferase, WSD1-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31650 all species →	O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan
GO:0019432 all species →	Biological Process	triglyceride biosynthetic process	Interproscan
GO:0045017 all species →	Biological Process	glycerolipid biosynthetic process	Interproscan
GO:0004144 all species →	Molecular Function	diacylglycerol O-acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00629	GPAT1_2; glycerol-3-phosphate O-acyltransferase 1/2	EC:2.3.1.15	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.