Gene detail

Detailed information of amic_s0088.g48.t1 in Acropora microphthalma

Genomic Location: sc0000088_pilon:669942...674957
NR annotation: XP_029183383.1, cyclic AMP-dependent transcription factor ATF-3-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0088.g48.t1

GGTGATGTAATTCTTGACAGACGACGGAAAACATTTTCAGATAAAACAGCAGCTTGAATGCAAAATGCTACGCCAACAATTACTACTGCACAAATGCATTTTCGAACAGTAGGAAAAAATTATAAAGAAAAGAATGACAACTCGCTGCAAGCTGGCAAATGAATTTAAACAACTGAACGCAATACACGTTCATGAATGAGATACAAGAACTTCATAAACAGGGCAATTGGAAAAAAGGTTTACCAAACTGTTAGAAAAAATCAGAACCGAACGGTATAAGAACAAGATAAAATGAGACAACCCGCGCTTTCGTTTTCAAAGAATATGTGCCAAAAAGTAACAATAAAGttctttctttctttctttccttttttACATTCCACTTCAAACTTACGGCTCTCAACGAATCTCAACGTTAACGTGGAGACGGGACAATCTACTTAATTATTTTATTAGATTAACGAGAGCTTGAGAGCCTTTTCAAAATCAACTTTGTACCTTATTGTTATCGAGTCGGTTAGCTCGCTCCTCGCACTTAGCACCAGTGCTCTTTCATAAAAAATCCATGGGACGATCTGGTGACGAAAAATGCCATTAACAGTAAAAAGTGACCCCAAAATATTTGACAGGTACCCGTGAAGCAATCACACCGCTCGACAAACTGTCTCGTGTTTGTTACCGGTCTACTTTTGTCCCATTTCGAACAGCTGCAAAGTATGTGCGTCTTTGTTTGAGCAGACAGGTCTTCTGGTGTCTCAGCGCTTCTCGGCGGAAGCAAAAGAACCAAGAAAGAGGGATTAGATCATCGCTGCCTGCAATCTCGTAACCTCTTCTCGAACAACTGATGTATCTTTAAACCGGCCAATCAAAGCACAGTTGACCTTATCCAAGGACCTTTAACATCTTTCTCTCGGTGTGTTCATGGGACACATTTGTAAAGATCGAGGGCAAATCCTATTTGGGCCTCCGTTTCGCCCTTGACGGAGGCCTGACAGAGCAACGAGTTCCTATGGAAGCCAGGGTTCCTATTGCACCGGATTTTGAAGAGAATTACACTCCCATGGCTCATGGCTTCTCTGCTGCAACGAAGGATTTCTCTGGATTGTTAGAATGCCATCAGTCAACGAATTTTCACCTGCTGGAGATGCAAGCCAAACCGGAGCCGAGCCATTGCAGCAATGAAGATGCCTCGGAGGATATGGAGTATATGATGGAAATACCGTTCGAATGCGACAATGGAACAGAAGCGGTGTCCGCTGACGAGTTAGAACGAAGACGAATAAGGAGGGAAAGGAACAAAGTTGCTGCATCTAAATGCCGAAAAAAGAGAAAAGAACACGTGAAAACACTGGTTGAGGCCTCCGAGGAGTTGGAACATCAAAACAACGACCTACAGGGTCAGATTAGCAAATTGCAAGCAGAGATCAAGCAGCTAGAATTTATGTTAGACTCTCACAGCTGTTCTAAACACTCCCATGGACAGCTGCAAGAAGAGCAAGATCTCGGAATGCATACCAACATTTAGTTTCTGGTGATGCGGAGAAAATTCATCTGGAACGAGATTCCAGTTTCTGATAAGGGTCAGAGCATCGCGTGTGAAATGAGCCGTGCGCGAAGTTATTGCAGGATCACGTGCGAGGGGTCGCGCCAGTAACGAGTTTAAGTGTGAATTTCCCTTGAGGAAACGACTTTCTTCGTGAGTTTCTTCTTAAGAGAAGATATTTTCATTTACTCCATAAGCATTTCCAATTGCTTCACAAAAAGTAAATAATATTTAATGTAATTGGAGAAATAGTAATTTGCTGAGCTGTGTAGCGGAAAACTCGCGGCTGGCCAAGCACAGACAATTAGAGAAGTAATATAGTGAGGTGGGGGTATTTTCAGCTTGTACGAAACGATAGTCTGTTTTCACCATTCGTTCAAGCAGAATTGTTTTTTAGGGGGAGGGGGGGGGCAGATTGGTTGCACAGATTCTTCCTTTTTTACATTCTAACACCTTCCAGCCCCCGCTCCCCACATCATTGCTTTTCAAATCTGCTTACGTTCCAAAGCTTACGCTCTTGCTATGAAACACAACGAggaacttcaacgacagcagaaacaaaggtacagacaacgccacaaattatgcaataatatggtttgtttcattgatgaagaaaggctcactgcatgtgcggcaagacttcaggacatctttgccTATGAAATTGCGACGGAATGAATAAGACATTGTTTTCCTTCGTCGCATCAACAAATTTTGAGCGGATAAGGTAGCGCTAACGAACATCAAATATTTCCATTTCTTTTCAATCGCTGCTTCTCGACACGACGAATACTTCTCTTTATACTTTAATGTGAAGTATTATGTAGTAGCTGTTACAATTGTAGCCCACCTGAGAGAGACTAAGGCCGGGTCCTCAAGAAGTCATAATCATAATTATAATAAGAAAAAACAAAGATACACATACGCAGTAGAGAACTTATGGTTGCCTGCAAGTGTTCCCGGATAGCGAAATCACGCGTACGCTTATCATGTTCAGTTGCCATCTGGCTTAACGAGTATAACCACTGGTCAAATTGGCAACATTTCCACAATTTACAGGCTTCCGATTTTTAGTGTACGGTTCACACGCACAACTTAACGTCGTAGCCATAGTAGTATGAATACAATAATAAATTAACGATAATAAATTAACAGACGCGTGCTGTTTGTTATGACCACCAAGACCATGGTAACGATTATTATGATTTCCTAACCGCCTACATAAACATCCTAAGTCCAGGTTTTGAACCTGCCTGAGGTTCGGCTGCGCACAGGCTGTTACAATTGCTGTTTGCCACCATAAAAATTAAATAAAATATGAAAAAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23050	p55-v-Fos-transforming protein OS=Avian retrovirus NK24 OX=11875 GN=V-FOS PE=3 SV=1
P11939	Protein c-Fos OS=Gallus gallus OX=9031 GN=FOS PE=1 SV=1
O77628	Protein c-Fos OS=Bos taurus OX=9913 GN=FOS PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000852 (this species only)
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00170 all species →	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000837 all species →	Family	AP-1 transcription factor	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23351 all species →	FOS TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0088.g48.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.