Gene detail

Detailed information of amic_s0089.g23.t1 in Acropora microphthalma

Genomic Location: sc0000089_pilon:340179...370545
NR annotation: XP_029200455.2, insulin-like growth factor 2 mRNA-binding protein 2 isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0089.g23.t1

GGCGAAGAGCTTTTGTCAAATTTCAGCGCGCTTGCATACTGTTGTGCTTTTGTGTTTGTCCACGATCAAAGAATTACTTCCCTGCTCAATATCTACTGAATGGGCGTCTTGTCGGACTGGCACGAAATTCAATGGGAACGTAAGAGACCAGAGACGGGCCAATTGAGGCGGGCTTTGCGTTGCGGTGGTAGACGGGAAACGGGTCTTCTGCATGGAGTAACAAGGTTGCTTCAGTCAAAGTAACACGTTTGGCAGGGAACAAAATCTCGGCTGCCCAATTTCCTGTCACCGTTGGCAGACATCAGCTCTCTGTATCGTTGGAAAAGCAAACCTTTCGCCGAATTAGCGCGACGTATCGTGGACTTTTGCCCTCCTCTTCTAGCTAAAAATAGCGCATTTGATGGAGTACTCCGGACGTGAAGAGCCACAAGGGGCCGTTGGACCCAGTTTAGAGCAAGTGACAGCTCAGTTCTCTTATCTAGGGGAAGATGAACTGTTAGACGAAAGGGACTCTCAGTCTCCTGACAGTGCACGAAGGAATGGGTCAAGATCTGGAAAGAGATCACGAAGAAATAGGCAGCGAACAGACAGCAATGATCAAGATTACTTCATTAGGGTCCTTGTACCACATAACATGGTGGGTGCAATCATTGGAAAAGAGGGAAAGAAGATCAAGGACCTCACAGATAAAACAGGAACTGATATCACTGTGCACAAAAAAGATGAGAAGGGTTATATTGAAAAGGTTGTAGAAATTGTTGGAACACCAGCGCAATGTACTGAAGCCAATCTCAGCATCCACAGAACAATGCGTTCAGAAACAGATCCAGTGAAGAGAGGGTCTGTGGTCACTATGCGTATTCTAGTTCATTGTGGCATTGTTGCACGTGTAATTGGAAGAGGTCATCACCACCTAACCAATATTACAGACACAACTAAAGTTACCTCTGTTAGAGCATTCAAGGAAGATTACAATCCTTTCAATCACATGGACAGAGTTATAACAATACAGTTTAAACTCCCACCTGAAGCCGATTCATCCCTTGATGAAGAGACTATGCTAAACGAACACGAAGAGGATGCCCTGAGAAAATGTAGTGAGGCGGAAAGTATGGTCAATGCCAAAGCTCATTTTTGTTTTAAAAAGATTATGGAGAACCGTGCAGCTTCACAGCAGTACTATATGCCACCTCAGCAAGGTCCATGGCCTCCAATGGGTGGCCCCTTGCAGAGTCCACCACCTAACCAACCCTTTGTTCCAAACTGGTTTCAAGGATTATTTGGAAATGTTTCCCAAGGATATATGCATCTTGCACATGTTCCAGTTAAAATTCACCTTACCTTCCCATCTAAGTTTGCGGGCCCCTTGATCGGCAAACAGGCCTCTAACTTAGCCCACATAAAGAAGTTTAGTGGAGCCAGTAAAATCCATGTCTTCCCAAAGGATCGTGAAGCACCTGAGAGATACATAGAGATCATTGGCACTCCTCTCCAACAATATTTTGCTCAACACTGTGTCTACTGTAAACTTGCTGAAGAAGGATATAAGACAAACTCTGGGGATAATGTTGGTGAACTGAAACTGAAAACAGAAATTTTTGTACCTCTGAAAGGCGGTAGTAAGGACCAGCCCAACTTAATAGGAAGATTCATTGGAAAAGAAGGCCATAATGTGAAAGAACTACAAAAGCAAACTGGTGTACGTATAAAAGTTGTAGCAGGCGATGAAAATACGGAAAACAAGGAAGCCGTTATTTTAATTGAAGAGAGCTTCGCCAGTGGTCAGCGAGCCCAGATGCAGATTCTTGATGCTATTGCACGTTGTCAATCCCCACCTCCAAGGCGACAGGCGCCTTACAGCTAAATTTACATCTACCGAAGTTCTTCCCAGATACGTTTGTGTAGAGGCCTGTTTCCAATGGATTTCTTTTGTCTGGCCAATTAATTCCTGACTTCACCGATGTCCTTCCAAAAGCCTCTTGTATCTGTTGAATTGTCCACAACACTTATATTATTCGTAACTCTGTTGCAATATTGCGTTATGCTAGGTGTATTTTTGGCACTTCCTACTCTTGCATCAACATTGTCATTAAGCTCCTTGTAGCTTTGGATAACTTCTTTCGGGATCTGCACTGTTGTGAAAACCCTTTAATTGAATAACCTTATTGGGAAGGCTAAGCTTAATTGGTCACGAGGTTTCCTTTTGACCGTGGGATGTTTTTTTTGCTCCCCACGTCTAATCGCGCGGAATTACACGGTTAATTGATTTGATTTTAGAAACGTTGCCAGAACTTTCTTGGTGCAACTTGGGAAACCATGGTTTGTTCACTCGAATTTCTAAATTGGCGATCAATGAAAACAACTAGTGGCTTCTGTCGGCAGATTGTCGTCAATTTCAAGTTTTATTGCATGCTGGGGTTTTAATGAAGTTCTTTAAATGCCGGTTGGTTTTTTGTCTCCTAGTGAAGTTCTGATCTGACGTCGAGGCCAAGCTTGTTTTCTATCTGACCATTGTCGCTTGTGACTTTTCTTTTACTGGAAGCCattcacccttgtcacacggcggccatattgtcccgggagaccaaaagagctttgttttaccacgctaagcctcgcaatggaaaccatggggatgaggcttagcgtggtaaaacaaagctttttttggtcccccggggcaatatggccgccttgtgacaagggcgaatCTCAAACAAGACAGTTAATTTAGTTGTAGGCTCTTTGTGTCTTCCAATCTTCTCTAGAGTGTCATTTGCGCATGTTATCAGTAGTCTTGTGGGAAACCACAAAGAGGATTCGCCAACGGATAGGGTTTAATTCCAAAGGTGTATAATTTCTCCTCTGACAAGTCTGCTGTAACATGAAGCTAAAACACCTTGTATATGACTAAATTTCCTCGTGGATTGAAATCATTTTAAAATGGTTTGAGGATTGGTATTTCTTTTTCTTAGTTCTTTAAACTCATATCACGATGCATGAACTTGTGAATCGTAATTTTAGCCGAATTTTACCGAGCATGCTTGTCAATACTTCGGCCCTTCTTGGGATGAGGGTAGAGGAAGCTTTTGTATCAGACAAATTGAAAAGTGTAAGCTACAAGCTCTTTTTTTGGTTGCTGCATTTTCAGACAGTATTTCACGCTTCTTATGATTCAACTATTGTGCCTAAGTTCACTCGAGCTCCCGTTCAGAAGACGATTTCAGGGAACTTCCCTGTGAGTAAAAAGATGCATTCAGGGGCAAGTAAGGTTTTCGCACATTTTACGTCACGTTCTGACAATATGATTAATAACCGCGTAAGGAAGATCCCTATCTTTGGAACTCGATCATCATGTGCGTTTGCGCTTTACACTAGTTATGTTGCAAGAAACGCTTTTCTGTTTGAATGAGACAACCTCGAATGCTGCGTTCTCGTAGCTGTTCGTGGTCATAAGCCTTACTTGTTCCTGGAAAAGCTCAGGTTTGGGCTTCGCGATTCTCACTGTATTATGATAAATGGGATTGTTTGGGGGGCGGGGTTACTATTGAATGACCTGTATTTGTGACAACTGTGTATTTTAACCAGTGTTCCATAACTGGCTTTGGAATGCTGCATTTGTAACCTTAATACTCAGCTACGCTGTCTGCTGTACTCTTGTCTTGAAACATATCTGGAATTCGATGGTCTATATATAAACCCATATTTTTCTCCAGATTAAATTATTTTGAACCCGTCGAGTTTTTGGAAGGTTATCTTTCGGAACCattgtgaagttaaggagaatggtgagaggacactttgtgaggcttactgactgtagcatgcatgtaattaagtgcgatctcggac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6M1	Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens OX=9606 GN=IGF2BP2 PE=1 SV=2
Q5SF07	Insulin-like growth factor 2 mRNA-binding protein 2 OS=Mus musculus OX=10090 GN=Igf2bp2 PE=1 SV=1
Q8CGX0	Insulin-like growth factor 2 mRNA-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Igf2bp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003418 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288 all species →	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0089.g23.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.