Gene detail

Detailed information of amic_s0089.g40.t1 in Acropora microphthalma

Genomic Location: sc0000089_pilon:588022...600118
NR annotation: XP_044178826.1, nucleotide-binding oligomerization domain-containing protein 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0089.g40.t1

atggaatcaaacactttggtgggagttaatctcagctcggccttcaaaaagacgccagttttgccacacccagatcagaagcgaaggcgaataatcacatacgaaatggagttttcggcaatcgtggaaaaggtctgtcctaagactttaagcaaggtcacatttgcactgattgcatgttggatggtatccggtagcattcttcttggagcgttctcagatatggaaatcaatgaacccaggttcgattttggatgtgatgggaaaggcaacattgacaaggacttcctccgcggaaagtgctatgaccaatattggaaacaaaatcataaacttggcattcctccttacctctttgtcatagttaatgtgctccttattccaattgtgaccttcatctactcgcaatacgccaagtcaacggttaatgaactcgaacgtaatcctcaagatgccgaaggacaacccaggaacccaagacgaaacctctttaacgcttatctttgtcaactcattgttaacattgttttggcgataactttcatcctcttcttagaaagtcatctattttatcccaagaactttccgtcaaacttttcctgttctatcgaaaattcgtcgtcagttaacggaacacaatctaccactttatttaactgttcgaatcgtcgagcgggttctaaaaatgtctggaccaaagttgtaacagcagcgaatggaattttcgcaatttttgctttcctggagattatttggatcttgtcgcgaggtagacatgaaaaagaattcatggaaaattggcagttttatgctgatcacttgaactcaaactcagacaaacagcgccaaggacgaccagactcgattcttttagtggaatcacaagatcatgctgacaacaTCACGcatgaaccgaggagcgatgaaataacaaactctgctgaacaccaagaacacgctcaagccgaaaatgatctccacagtggacaaacagacgggattcctttattggaatcacaagatcgagctgtcaacaTCACGcatgaaccgaggaacgatgaaataacaaactctgctgaacaccaagaacacgctcaagccaaaaatgatctcgacatagccatacagacactgagaaagaatttcttgcagggcactgataagctaagtgatcttaaacaaccttttggacaaccgagtcccggcgaaccgggccacatacatgatctcacaatagacgagatctatgtccatgtagtaatagttaaaggcagagcttaccataaatttgcggaagacaggtggcaacagctcaaagaatacccacccgatgcaaaggactgcaaattcgcaaaaccagaggatattcttggcgaaaatcaaaagaatgttctcgttgttggccgtcctgggataggaaagacgtcattgagcacaaagttgcttcgccgttgggcatctggtgaggcttttaatggagatcaacatttcaacgttgtcttcctcttaaagtttaggcgttttaataataacaacgcaaacttgagccttcgtgatctgctggccgccgcagaaacagtcctgaatttggatgatgctatgtgggattttataaaacaagaacctaacaaagttcttttaattttcgacggattggatgaatattcaaggaaagaggatatcaaggcccaagatgacgcaacttacaaaaactgtgtggacgaaaagatgcccttttccgttttgtataacaaactgatggagggaaaccttcttcctggtgtaagcatactcacgacaacacgaccaactgctgtgaaatgtgttcgtcatgtaccttttcaaagaacagtcgaaattcgcggattcacttcggatgacgttaaaaaatatgtgaagaattttactcgaggtaaccccgaagcaatgaagaaaatgtgggaacacaccaagtccaacattaacctgttttcattttgctacatcccaatgaactgttttctcatttgccactgcttgcttcaaatcatcctttctgagtcttcccaagcactgccaacgaagatgacggacatttataaaatgacggtaaagatgttcttgttcaatcacaacagggaaggtttctctccgcaggaactctcaaggctcaagtcaacgcacatggatcagccatttgacaagttgcctgaagaatttcaaaaaatcttgaacagtcttggtaaaatcgcttttaaagggattgaagaaggaagactactctttgaatcaagcgaagtcagtgagttggaagattgtggactgcttcacaaactgcctgacctgaaacggaaagcattggatgacccgccgaagtcccaattctgttttactcacctgacggtacaagaattctttgccgcaaagcatctggtggacaccaagacaaatgagggaattgaaggatttgttcgcaatcatatcaatgacggcaaatggcaagtggtactgcagctcgcagccggattgctgaagaactcattaagcagccacatttttatcgaactgttgccggagtcgacaaacagccctgagtctttagaaccaaaaacactgacctattggccagcgactgacgaagacaaacatttagctgtgcaagtatgtaagtgtctgtacgagattaatgatgaacagcagccagtattacaaaataaaatagagaaaattaaattcaacgcggttgtatttaacctttgttcactcgcaccgattgatgttgctgctatcttacatttcttagaaaatgctgaaaaagtttcttatattgatttgagcgccaatcattcgggagacttaagcgcaaacgaagtggaaaaatttcttgttcacggggagcacaaactaaaatcgttacaactccatagtaacgagttcactgacaacgcagcgaaggtattcgctgcggcacttaagcacattaattgtaaactagaatcgttatgcctcagtcgtaacaagttcaccgacaacgcagcgaaggaattcgctgcagcacttcaacacagtaattgtaaactagagtcgttatacctcagtgagaacaagttcaccgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactagaatcgttagacctcagtgctaacgtgttcaccgacaacgcagcgaaggaattcgctgcagcttttcagcacagtaattgtaaactagaatcgttatacctcacttttaactacttcaccgacaacgcagcgaaggaattcgctgcagcacttcagcacagtaattgtaaactagtatcgttaaacctcagtgagaacaagttcaccgacaacgcagcgaaggatttcgctgcagcacttcagcacagtaattgtaacctagtatcgttaaacctcagtcataacgagttaaccgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactagaatcgttagacctcggtgctaacgagttcaccgacaacgcagcgaaggaattcgctgcagcacttgagcacattcacacaggagggaaacaagtatttgaccgacgcgggaaagcaaagtaa

Transcript

amic_s0089.g40.t1

AACCATTTGCTTCACAAACGGGTTTCGCCACGAATCTAGATCACATTCAAGAAGGCAATTTCCCATGTATCAGCAATTGGGGCCAAATGCTCAAAGATTCCAAAAAGCTGGTAAACCTTTGAGAGACTTTCTAATTTAATGACGACATCGTTTCTCCAAGgaaacgaatttttatggaatcaaacactttggtgggagttaatctcagctcggccttcaaaaagacgccagttttgccacacccagatcagaagcgaaggcgaataatcacatacgaaatggagttttcggcaatcgtggaaaaggtctgtcctaagactttaagcaaggtcacatttgcactgattgcatgttggatggtatccggtagcattcttcttggagcgttctcagatatggaaatcaatgaacccaggttcgattttggatgtgatgggaaaggcaacattgacaaggacttcctccgcggaaagtgctatgaccaatattggaaacaaaatcataaacttggcattcctccttacctctttgtcatagttaatgtgctccttattccaattgtgaccttcatctactcgcaatacgccaagtcaacggttaatgaactcgaacgtaatcctcaagatgccgaaggacaacccaggaacccaagacgaaacctctttaacgcttatctttgtcaactcattgttaacattgttttggcgataactttcatcctcttcttagaaagtcatctattttatcccaagaactttccgtcaaacttttcctgttctatcgaaaattcgtcgtcagttaacggaacacaatctaccactttatttaactgttcgaatcgtcgagcgggttctaaaaatgtctggaccaaagttgtaacagcagcgaatggaattttcgcaatttttgctttcctggagattatttggatcttgtcgcgaggtagacatgaaaaagaattcatggaaaattggcagttttatgctgatcacttgaactcaaactcagacaaacagcgccaaggacgaccagactcgattcttttagtggaatcacaagatcatgctgacaacaTCACGcatgaaccgaggagcgatgaaataacaaactctgctgaacaccaagaacacgctcaagccgaaaatgatctccacagtggacaaacagacgggattcctttattggaatcacaagatcgagctgtcaacaTCACGcatgaaccgaggaacgatgaaataacaaactctgctgaacaccaagaacacgctcaagccaaaaatgatctcgacatagccatacagacactgagaaagaatttcttgcagggcactgataagctaagtgatcttaaacaaccttttggacaaccgagtcccggcgaaccgggccacatacatgatctcacaatagacgagatctatgtccatgtagtaatagttaaaggcagagcttaccataaatttgcggaagacaggtggcaacagctcaaagaatacccacccgatgcaaaggactgcaaattcgcaaaaccagaggatattcttggcgaaaatcaaaagaatgttctcgttgttggccgtcctgggataggaaagacgtcattgagcacaaagttgcttcgccgttgggcatctggtgaggcttttaatggagatcaacatttcaacgttgtcttcctcttaaagtttaggcgttttaataataacaacgcaaacttgagccttcgtgatctgctggccgccgcagaaacagtcctgaatttggatgatgctatgtgggattttataaaacaagaacctaacaaagttcttttaattttcgacggattggatgaatattcaaggaaagaggatatcaaggcccaagatgacgcaacttacaaaaactgtgtggacgaaaagatgcccttttccgttttgtataacaaactgatggagggaaaccttcttcctggtgtaagcatactcacgacaacacgaccaactgctgtgaaatgtgttcgtcatgtaccttttcaaagaacagtcgaaattcgcggattcacttcggatgacgttaaaaaatatgtgaagaattttactcgaggtaaccccgaagcaatgaagaaaatgtgggaacacaccaagtccaacattaacctgttttcattttgctacatcccaatgaactgttttctcatttgccactgcttgcttcaaatcatcctttctgagtcttcccaagcactgccaacgaagatgacggacatttataaaatgacggtaaagatgttcttgttcaatcacaacagggaaggtttctctccgcaggaactctcaaggctcaagtcaacgcacatggatcagccatttgacaagttgcctgaagaatttcaaaaaatcttgaacagtcttggtaaaatcgcttttaaagggattgaagaaggaagactactctttgaatcaagcgaagtcagtgagttggaagattgtggactgcttcacaaactgcctgacctgaaacggaaagcattggatgacccgccgaagtcccaattctgttttactcacctgacggtacaagaattctttgccgcaaagcatctggtggacaccaagacaaatgagggaattgaaggatttgttcgcaatcatatcaatgacggcaaatggcaagtggtactgcagctcgcagccggattgctgaagaactcattaagcagccacatttttatcgaactgttgccggagtcgacaaacagccctgagtctttagaaccaaaaacactgacctattggccagcgactgacgaagacaaacatttagctgtgcaagtatgtaagtgtctgtacgagattaatgatgaacagcagccagtattacaaaataaaatagagaaaattaaattcaacgcggttgtatttaacctttgttcactcgcaccgattgatgttgctgctatcttacatttcttagaaaatgctgaaaaagtttcttatattgatttgagcgccaatcattcgggagacttaagcgcaaacgaagtggaaaaatttcttgttcacggggagcacaaactaaaatcgttacaactccatagtaacgagttcactgacaacgcagcgaaggtattcgctgcggcacttaagcacattaattgtaaactagaatcgttatgcctcagtcgtaacaagttcaccgacaacgcagcgaaggaattcgctgcagcacttcaacacagtaattgtaaactagagtcgttatacctcagtgagaacaagttcaccgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactagaatcgttagacctcagtgctaacgtgttcaccgacaacgcagcgaaggaattcgctgcagcttttcagcacagtaattgtaaactagaatcgttatacctcacttttaactacttcaccgacaacgcagcgaaggaattcgctgcagcacttcagcacagtaattgtaaactagtatcgttaaacctcagtgagaacaagttcaccgacaacgcagcgaaggatttcgctgcagcacttcagcacagtaattgtaacctagtatcgttaaacctcagtcataacgagttaaccgacaacgcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactagaatcgttagacctcggtgctaacgagttcaccgacaacgcagcgaaggaattcgctgcagcacttgagcacattcacacaggagggaaacaagtatttgaccgacgcgggaaagcaaagtaattgcgaagttgttttatgaaaagactacaaccctaacatgctaaaccctttcattgaaaggtcaaataatttgaaatcgtaagacaaaaggtgaaattcaaaagggacaatgaatataaacagcaaaagagacttaaacatgagagagccatcaacaaatacacaggtaaattgaaagaaaaaatactaaaacaaatttcataacaaaagtaatttattacattagcaagaaattacaaatcaatttgattttgaaagtcagctcaccacaaagagattcggtaacagaagataaattatcagatatttcccaaaggtctcaaagttggatgtgtccatggtctcagctccgttctcactctgtaccccaggaactcttgttatatacaaagtttttgctttctcatctttagtgcttcattattttgtgcacaaaatttgtcttgaagcagtacaacatcagagttattGGTATCTGACAAGAGTAGTTATGGAAATTGAAAGAAATTTTTGTAATACTGTTTGATATATGGATCCaaaggaaccaatcagagatctttaaagtgaaccaatcggtgtgctttaaaatgaaccaatcagacaatagttgagaaatgcatgcttcctaagaggtcagacgagaaccaatcagaaaaaggcaaagtgaaatttggatcctaaaatttcagacttgctttcaatttttaagactgactttttactcattaatttgtggttaaaataggtttaattataaggttctggatatcttgtttgattgccagtggtgaagtttagtcaaagagtgtttcaaatacaatttaaatttgtac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3VPR6	Protein NLRC5 OS=Mus musculus OX=10090 GN=Nlrc5 PE=1 SV=2
C6FG12	Protein NLRC5 OS=Ictalurus punctatus OX=7998 GN=nlrc5 PE=2 SV=1
Q8K3Z0	Nucleotide-binding oligomerization domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nod2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000076 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR038359 all species →	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan
IPR050637 all species →	Family	NLRP family, innate immunity and inflammation regulators	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690 all species →	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0089.g40.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.