Gene detail

Detailed information of amic_s0089.g7.t2 in Acropora microphthalma

Genomic Location: sc0000089_pilon:124642...138175
NR annotation: XP_044178931.1, uncharacterized protein LOC114965033 isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0089.g7.t2

GAGGAAGTTAGGCTTTGAAGTAATGTCAAATTTTCCCGGAACAGTTTCTTTCGTCCCCAAAGTTGAAAATTCAGTACCCTTGGAACAATCTCAAAATCTGCAAGAGGTTCAAGTTAAAGAAGAACCGAAAGAAGTTTTATGTGGCGACGTTTCACGCGATACCATACCAGTCGTTGTGAAGGAAACACCGGGAAATTCAGAAGAATCAGGGAAGGTAGACCCTCGCCAACAATGGATAAACACTGATGAAACAAGGCCTTACTACTGCAAGCTTTGTGATTTTAACATGGAGACCATGGAGTTTTTCCAGCACCACTGCATGAGTCCACGGCATGTAAAGCGTGCAATTGAAGAGTTCAAAATTAAACTTCCGAGACGACTGGAGGATAAAGAAGAAAAGAAACCATCCCATGAGTTCAACTGTCAGGTTTGTCTTGTAACATGCAACAGTGACACTGCCTGGAATTCCCATCTTCTTGGACAAAAACATAGGAAGGCCTTGGAAAAGCAAGGAGCAGAAAGAGCACAGCAAAAGGAACAAGAGAAAGCTTTTATGATGAATGTCATGAACACTAATTACAACCAAGGAACTGGAAGGGGAGGGAGAGGAAGAGGGGGAGGCGTGGGTCCTATGCGAGGAGCAGGGCACACCGGTGGGCACACACGTAAACCATATGACAAGCCAATGCATGCCGTCCAGCAGCCAAGCGCAAGTGGTCCTATTGGTGCCAAGGATTTTGCCACTTATCCTGAACCTCTCATAGGCCTGGAGTATGTCACAGAAATCCAGGTTATAGGACAGAGTCCCAGGTATCATTGCCAGCTGTGTGACTCTAAATTTGACCACAACTTGAAGTTCCCACACCTTGTTGGAAGTAAACATCGTTTCAATGTTTTGAAAGAGAAAGTTCCCGAAGTTGCACAGCATATTCGTGGCGATGTCAAAAAGAGATCAGAATTGTCCAGTAAGTTACTTGAAGAAGCGCACAAGTTGGAGATGATGGAAGGGCGTCAACAGGTGAAAACAAGAGTTGAGAAAAGCCCATTCAACGCCATCAATAACCAGGCTGCTACCACCAGGGGAGGAATGAAAGGGAACAGTTCAATGCAGAACATTTCAAGAGGAGGAGGACTAATGCAACAAACTCCGTTTGGTCGAGGACAGAGAGGTGGCCGGGGTGGAGTGGTATCTACAAGGGGAGGAATGCAAGCGCCAACGCCAACACGTGGTAGAGCGCAAGGTATTGTTCGCGGTAACGCCCAAGGCAGTGTTCGCGGTATGTTGCGAGGAAGAGGCAACCAGCAAACCTCATCGCACAATAGTCAGCAACAATTCGGATTTACCAAAAACAGTCGAGGGAGAGGCCGAGGAAGAGGGTCAGCCGGGGGCTACAACTCTAACCAGGCTTGGAATCAGAATGTGTCCTTCAGCAATGTGCAGAACCAGCCGTGCGCTAAGAGCTCGTTTTGTGGCAGTGAGGGTAGTAGTCAGTGGGATGATAACAGTTTTGTGGGAGGGGAAAAGATGCTACCTCCAGAGGCATTTAAGAATCAACAACAGTTTAATCAATATGATGAGTTCTACGATGATCACTATGGAGGAGAAGCCCTCAGTAGCACGAATTATGAGTACGAGGAATCATTCTCCAACGCAGCACCTTTTCGTAGTCCAGGCACAACAAGTGGAAACAGCCTTCAGTCATCGCAGAATCAACCGTTCAATGCGGCTCCGCAAGGGGCGAATGCTAACACTAACAGCTCCACTGGAACTGGCAAGAAAAGTGTCAGTCTTCTTCAGGATGCAATAGCAGACTTGGGAAAACTAGTGAGCAGTGAAGAAGATGCTTCAGTTGCCTTACAGGTGTCAAATGCATTGACCCACGCCTTGCTCCAATTTCGAATGAATAGCCTTCCACAAGAGAGTGGCAGTACGACAGGAGGTGCCGACGACATGGACACAAGCTCGTAAAAGTTGACTTAACTCATGCCGGAACTGTGAATTGTTGTCCATCGCTGCAACTAGTTCACTGACCATCTGAATGAAGCATAGTTTTTTGTATTGGTGTTGTGATTTTAAACTCTTAGAGAGGAAGATAAGAAAGGTAGTCTGAACAAACGTTTTCGCGTTTTAGCCTTCAGAGAAGGCTTTGTTTCGACCGGGTTAAGACTGATGTTTCCAACTTTTTGCTGGCATTTATAAACCAGAGTGGGAATGGGACAAGTGGACAAAAGGTGGGGGTCGGGCTACCTCAATTCCTTGTTGATTGTACCCCTCACCCCCGCAATATTTTTTGAATGACCCTCTGTTACTTTCATCATACAAGATAGCAGCAAGATCCCTCCACCATGTTCGATATCCACCAAAGCACGTCTTTTTGCTAGCTACAAACTAGGTGAAGGAGGTGGCTCTGTTCTCAAATAGTTCTGACATTTCAAATTCACGGGTTGAAGAGTCTCTTTTGGAGGGATTTAATTTTCAACCCCTCAATGAATAGTGGGTCGCAGGCTTGGTGCAGTAGCGAGGGCTGGCTTGCAGTTTTGTCCCAGGCTCCATATTGGGCACGACGGTTCGGCATGTGTTGTTTTAGGTTCTCGGTCTCAGTGATTTTTCTGTGGGTACTCATAAAGGATCCAAGATGGACTTTTGTCCGCGAATGTAAGAgaaatcattaaatagctatgggcagaaccggtttttctgagcttgcaagaatgagcacccgcagcaaaccattgttttaacgtacatgacttgtcagcaaccttgttccggtcattgatgtttaaggtcttccGAATATAACCCGTCAATTCTGCCGAACTCATAGGGCTACGCTTGAGCAAACTGTTTATCTTTGAGGAGCAGAGTCAGTTTAATAACAATCGTTTATTAAAACTCCCTTGTAGTTGGCTATAAACTAAATTATAGCGAGTTAATTTCAAGCATAAGAATAAACACTACCATTTACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003670 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45762 all species →	ZINC FINGER RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0089.g7.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.