Detailed information of amic_s0090.g21.t1 in Acropora microphthalma

Genomic Location: sc0000090_pilon:416116...428977
NR annotation: XP_029199018.2, protocadherin Fat 4-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q24292Protein dachsous OS=Drosophila melanogaster OX=7227 GN=ds PE=1 SV=3
D4ACX8Protocadherin-16 OS=Rattus norvegicus OX=10116 GN=Dchs1 PE=3 SV=2
E9PVD3Protocadherin-16 OS=Mus musculus OX=10090 GN=Dchs1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000235 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01049
all species →		CADH_Y-type_LIRCadherin, Y-type LIR-motifFamilyInterproscan
PF00028
all species →		CadherinCadherin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020894
all species →		Conserved_siteCadherin conserved siteInterproscan
IPR002126
all species →		DomainCadherin-likeInterproscan
IPR015919
all species →		Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR000233
all species →		DomainCadherin, Y-type LIR-motifInterproscan
IPR027397
all species →		Homologous_superfamilyCatenin binding domain superfamilyInterproscan
IPR050174
all species →		FamilyProtocadherin/Cadherin-related Cell AdhesionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24028
all species →		CADHERIN-87AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0090.g21.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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