Gene detail

Detailed information of amic_s0090.g28.t1 in Acropora microphthalma

Genomic Location: sc0000090_pilon:525174...542014
NR annotation: XP_029199080.1, nicotinamidase-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0090.g28.t1

ATGTATTTAACGACCTTGGAGCGGGTCACGTGGGTTGTCCTCTACAGTTGCCTTTCATTGCTCACTATCATTGGTAATTCACTTTCCATTGCCGTATTCCTCAATAGCTCAAGGCTGAGACGCATGCGCACCAGCATACTTCTCATGAACTTGGCAGTAGCTGACCTGCTCGTGGGCGCGGTTGTTGTTCCAATGTACATGGTACACTTGTGGCCTCTATGTGCATTGGCTAAGAACCCAGCATTTGCTTCCGCTCACGAAGCTGTTGATCTCCTAACTGGTTTTGCCTCTCTGTTCAGCCTGTCATTTATTGGCCTCGAACGAATGTTTTCAGTATTTTGGCCCCACCGACATCGTGTCATCGGAAAACTACCTTACGCTGGAGCAGTCATTTTCTGCTGGTTTCTCTCTTCACTACAGGTCTTACTGCATCTTTTAAAAGACCACAAAATCATCGAATTCGAGGTCTTTTTCTACTTCATCATGAGTGCTCTTTCCTTTGTCCTCGTTGTGATGCTTGCAGCATACATTGCTGTCTGGTACAAAGTGCGGGCTCGTCAAAAAGAGCTGCAAGCTCGGCACCGAAGGTACAGTCGTCTGTCGATGGAACACGAACAGAAACTCGCCCTTACTCTCGCGATTGTGACCAGCGTGTTTTTCGTCACGTGGCTTCCTTTTCACTTCCTCAACATCGCAGTCTTCTATTGTGTTCCATGTCGAAAAAAAGTGGCGCTGAATTGGATACTCGCCATCAAACTCCTCCAATACAGCAATTCCTTCATGAATCTGATCATATACAGCTTCCGATTTCCGGAGTTTCGGCGGACTCTGTGCCGGGTCTGTGGCAGACATTTGCGCATCAGCCCAAATCAAGAGCAATCAAATATGATTGGACGCCAGAGTTCACTGAAAACAAACAATCAAAGTCCATTAGAAATAGGAGACATCAGCAAGGATTTCCTGGCCTCCAGCGTAGGTCGTGTGATTACAGTGAGGAGACAAAGGGGAAAGGAGGGAGAGCAGACATTGCAGTCAGTCAAGCAGAGCATATCGGGTTCTTTCACTAAATCATCACTAGGGGATTATTCCAAGTACTTGGAAGTGCCTGACGATGAATTTGATAACTGGCTAAACCTGCTAACTGCACAAGAAGAAATGGATCCATTTACTGAAGAACAGAAGAGAGAAATTAAGAGGCAATTTTCTACTTGTTTGAAAAGAATTGATGAGAAATCCTCTACAGCCCTGTGGGAATATTGGTTGCGGACAGCTCTTGATCCTGTTTCAGCATTACTTATTATTGATGTTCAAAATGACTTTATAAGTGGCTCATTGGGACTAAAAGACTGTCCAGCAGGAGAAGATGGTGAAGAAGTTGTTCCAGTGATACAAGATCTGTTTTCAAAAGAACTGTTCAGTGTTGTTGTTTATTCTTTGGATTGGCATCCTTCAGACCACTGTTCCTTTCTAGATAATGTCTCATTGTACCCACTTCATTGCTCAAGTGCAGTTACTGTCAACAAAGCAAAGTTGTTTGACACTGTGGTGTATGACAAAATCCCAGTCATTGATCAAGTTTTATGGCCACAGCACTGTGTCATGAACAGCTGGGGAGCTGAGCTGCATAAAGAACTCAGACCACCTTCAGAATCTGACATCATCATCAGAAAGGGCAGTGACCCTTGCATAGATTGCTATTCTGCATTTTGGGACAATGGCGACTGCACTCAGTCATCCTTGTTTGTTGACCTGTTGAAGCTAGGTGTGACAGATGTGTATTGTTGTGGTTTGGCCTTTGACGTTTGTGTTAAACACACGGCATTGGATGCGGCCAGTCAGGGATTTAGGACCCATGTTATAGTTGACGCGTGCAGAGGTGTAACTCCTGAAGGCATTGCAAAGACAAAAGAAGACTTTGCAAAGAATGGAATAAAGTTATTGCAATCAAAAGAGGTAGCAGATGCCATCAGGGACAAACCGCAAAAATGA

Transcript

amic_s0090.g28.t1

ATCCGATAAAATATGAAAATTACTTTGAATTTCAAGCGAACACTCAAAAATTGCGAACTTTCTTAAGTAAACAGTAATTTTGTCAAAGAAGCTTGTCAACACAAAGCATACATTAGCAGCGTTTTAAAAGCTCTCGACTTCAGCTCAGACTTGACGTCCTCAGTTGCAACACGTATTCAGCTAAAACCACTTGAAGACTTGACGTCAAAACCAGGTTGTACGACAATCATGTATTTAACGACCTTGGAGCGGGTCACGTGGGTTGTCCTCTACAGTTGCCTTTCATTGCTCACTATCATTGGTAATTCACTTTCCATTGCCGTATTCCTCAATAGCTCAAGGCTGAGACGCATGCGCACCAGCATACTTCTCATGAACTTGGCAGTAGCTGACCTGCTCGTGGGCGCGGTTGTTGTTCCAATGTACATGGTACACTTGTGGCCTCTATGTGCATTGGCTAAGAACCCAGCATTTGCTTCCGCTCACGAAGCTGTTGATCTCCTAACTGGTTTTGCCTCTCTGTTCAGCCTGTCATTTATTGGCCTCGAACGAATGTTTTCAGTATTTTGGCCCCACCGACATCGTGTCATCGGAAAACTACCTTACGCTGGAGCAGTCATTTTCTGCTGGTTTCTCTCTTCACTACAGGTCTTACTGCATCTTTTAAAAGACCACAAAATCATCGAATTCGAGGTCTTTTTCTACTTCATCATGAGTGCTCTTTCCTTTGTCCTCGTTGTGATGCTTGCAGCATACATTGCTGTCTGGTACAAAGTGCGGGCTCGTCAAAAAGAGCTGCAAGCTCGGCACCGAAGGTACAGTCGTCTGTCGATGGAACACGAACAGAAACTCGCCCTTACTCTCGCGATTGTGACCAGCGTGTTTTTCGTCACGTGGCTTCCTTTTCACTTCCTCAACATCGCAGTCTTCTATTGTGTTCCATGTCGAAAAAAAGTGGCGCTGAATTGGATACTCGCCATCAAACTCCTCCAATACAGCAATTCCTTCATGAATCTGATCATATACAGCTTCCGATTTCCGGAGTTTCGGCGGACTCTGTGCCGGGTCTGTGGCAGACATTTGCGCATCAGCCCAAATCAAGAGCAATCAAATATGATTGGACGCCAGAGTTCACTGAAAACAAACAATCAAAGTCCATTAGAAATAGGAGACATCAGCAAGGATTTCCTGGCCTCCAGCGTAGGTCGTGTGATTACAGTGAGGAGACAAAGGGGAAAGGAGGGAGAGCAGACATTGCAGTCAGTCAAGCAGAGCATATCGGGTTCTTTCACTAAATCATCACTAGGGGATTATTCCAAGTACTTGGAAGTGCCTGACGATGAATTTGATAACTGGCTAAACCTGCTAACTGCACAAGAAGAAATGGATCCATTTACTGAAGAACAGAAGAGAGAAATTAAGAGGCAATTTTCTACTTGTTTGAAAAGAATTGATGAGAAATCCTCTACAGCCCTGTGGGAATATTGGTTGCGGACAGCTCTTGATCCTGTTTCAGCATTACTTATTATTGATGTTCAAAATGACTTTATAAGTGGCTCATTGGGACTAAAAGACTGTCCAGCAGGAGAAGATGGTGAAGAAGTTGTTCCAGTGATACAAGATCTGTTTTCAAAAGAACTGTTCAGTGTTGTTGTTTATTCTTTGGATTGGCATCCTTCAGACCACTGTTCCTTTCTAGATAATGTCTCATTGTACCCACTTCATTGCTCAAGTGCAGTTACTGTCAACAAAGCAAAGTTGTTTGACACTGTGGTGTATGACAAAATCCCAGTCATTGATCAAGTTTTATGGCCACAGCACTGTGTCATGAACAGCTGGGGAGCTGAGCTGCATAAAGAACTCAGACCACCTTCAGAATCTGACATCATCATCAGAAAGGGCAGTGACCCTTGCATAGATTGCTATTCTGCATTTTGGGACAATGGCGACTGCACTCAGTCATCCTTGTTTGTTGACCTGTTGAAGCTAGGTGTGACAGATGTGTATTGTTGTGGTTTGGCCTTTGACGTTTGTGTTAAACACACGGCATTGGATGCGGCCAGTCAGGGATTTAGGACCCATGTTATAGTTGACGCGTGCAGAGGTGTAACTCCTGAAGGCATTGCAAAGACAAAAGAAGACTTTGCAAAGAATGGAATAAAGTTATTGCAATCAAAAGAGGTAGCAGATGCCATCAGGGACAAACCGCAAAAATGAGTGACTGGAATAATAATCTGAAATTATAGCAGATATGATATTATTTATAGGCTTACATTGTTGCAGTACAATGGTGTCCCCAGGACAATTTTTATTCATAACTAATATAACCCTTTGTTGGATCAGGGATCTATTTGAGATTGATAAAACAATCATATTATTGCTTTCTGATATTTATCTTGTATATTATGAATGACAAAGGACCACTATTAAAGACAAACTCGGTCAATTTGAAAGGCATTATTCTACAGAATAGCCATACAAATTCAAAAGGTTGTTTGTTTGTCTGTCGTTGGGGCTTGAACCAGGAAATATGTAATAAATAGCtttcttatattgtaaactggagtacatgtatagatttccaccactgataaaaaccataccaggtg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21369	Nicotinamidase OS=Escherichia coli (strain K12) OX=83333 GN=pncA PE=1 SV=1
P53184	Nicotinamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PNC1 PE=1 SV=1
P11616	Adenosine receptor A1 OS=Canis lupus familiaris OX=9615 GN=ADORA1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005632 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00857 all species →	Isochorismatase	Isochorismatase family	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036380 all species →	Homologous_superfamily	Isochorismatase-like superfamily	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000868 all species →	Domain	Isochorismatase-like	Interproscan
IPR052347 all species →	Family	Isochorismatase Family Nicotinamidases	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11080 all species →	PYRAZINAMIDASE/NICOTINAMIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0090.g28.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.