Gene detail

Detailed information of amic_s0090.g3.t1 in Acropora microphthalma

Genomic Location: sc0000090_pilon:44369...58885
NR annotation: XP_029191363.2, ferredoxin-fold anticodon-binding domain-containing protein 1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0090.g3.t1

CATGGAAGGAATTATCGCTGCAATATTCTATATGGTTAAACAAGTTTCTTCATCTATTATTATTTGCGAAGAAAGCCAAAGTGGCAGTGGCTTACTGGGTTCCCTGGGGCTCGATAGCTTATCAGTTCAAGTTTTTGGATTCGGCTTTATTTTTGTGTCCTTCGTCTGTTACAACTTTTTCAACAATGAACAATGGCCCTCAGAAAAAGTGTGTGGTGAACCGCGTGACACAGGATCAGAGGGTGATATCAAAGGAAACAATGGAAGGAAGAAGACTGGTGTCATCCATTGAATCCATGACCTTCTCAGTTACATGTGAAGATGATTTTGTTATTACCGTAAAAGATGCAAAAGGGTGGCTGTTAAATAAGTCTGCATCTCAGTTGAGGGTGAGTCACAAGTCTCTAAAGGACTCTTTCACTGAGTTTCCTGCATGTGAGCTGCAGTTTAACTCTGCTTGTCAACCTGCCAAAGGTAGTTTTTTTGGTGTTCTGAGTTTCACACAACCATGCTTTGGTGAAACAGTGATTTATGTTCATGTTCCTGCTGTCCAAAAGAGGTTTATGCTAAAAGAAGGGTGGAGAGATCAGTCAAGCAGTTGAAAATTCTAGCAACAACAGTTTATTGAAAATCCAAATCGTGTCATCCCTGCAGATCATACTTTGTGTTTTTAGAAATCTGATAATTTTCTACACAATGGGTTTTTATTCCTAAAGAAGCTATCCGATGGCTTTAAGAGATAATTTTTCCCTTTTTGGATACCTTTGAATAGAAAGTCTCCTATTGAGGAGCTCTAGGTGAAGAGAAGAAGAGAGACCCTAGGAACGAGGTTCCTTTGTAGCAACCAAGCATCTTCCCACGACAGAAATGCTTCGCGCGTGAGCGCCTCAAGGCGTTTTAGTGTGATCGAAGAGGACTAGGCTCTACATCATTAATACACAGGATACCCAATTTCAAACTGGGAGAGGATCGGAGAGTCACTCCATGTTGACACTTCGCCTGTCGTTGGGCATCTGTACGTGATGGCGTTACTAGATCCAAAGTCTTATTCTGAGAATGTTTTGATCGTTGGAGATGGAAATTTTTCATTTACTCTTTGCCTAGCGTCTGCGCTATCTTATACATCTGTTAAAATCGTCGCAACCTCTCTGGATTCACGCTCTGATTTGGCAAACAATGATTTCGCTGTTGAGAACATTGCGAAATTATCTGAATACGAAAACGTAGAGATGTTTCACGAAGTTGATGCAACTAACATTTCGAAAACATTTGGCTCAAGAGTCTTTGATCGAATAATTTTCAACTTTCCCCATCTTGGTGGGAAATCAAACATTGGAAAATCTAGGAAGTTGTTGGAGCTGTTTTTTGCAAGCGCGGTGAAACACGTGGAGCCTTTCGAAGGGGAAATATGTGTGAGCCTTTGCCAGGGGCAAGGGGGGACACCTATGGACAACCCTAGAAGGGAATTGGGAAATTCTTGGCAGGTTGTTTATCAAGCTGCAAAATCAGATTTGATTTTAAGAGCAGTTTACCCATTCACAAGTGCAGATTATCACTGTTACAGAAGTGCAGGATTTCGTGGACAGCTTAGTAAAGGTTTCCACACTGTTAATGGCCTTACCCATGTGTTTGTGTATGGTGTTCCTCTTGACAATGTTCCAGATGATGCTGAGTCTTTTATTCACCGTGGTAATGACATTAAAAGACTATGCTGCCCTCTGGAAAATCATTGTGCAGTTCCATGTAATCCAGTTTACATCATTACAAACAAGCTGAAAAGTTTCTTCTTGGATTTGGTAGTTGATGATGCACATGTTTTCAGTGAATTTACAGAATTTGACAATTCTCCTCTGCAAGTTGATCAGTCAAGTTTAGTTGAAGTGACAAGAGACAACAAAACTCTTTTGGACAAAGCTATACATTGCCTCGAGGAAAAGGCTTGTTCCTTCGTTATGAGTGGGACTGACATTAACTTCTTTTTTCCTCCATCGTCTGAGAATCATCCAATCAGCCACAAAGTCATAGCGGTGCATACTATGTCAAATTCTGCAACTGCTGCAGAAGTCAGATCTAACTTAGAAGCTGTGATTGATTTATTCCTAAAGAACATGTGCTTTGATCTCAATGTAGTGAGAAAAAGGACTAAGTGCTCAAGTAATTCACCAGCTATTTCAACCTCTGATTTGCATCTGTTCACTAATTCAGAGATAATTGAGCTGCCGAATGGAACACAAACAAAATTTAAAAACCTAAAAAATGGTGCAAGCGCAGACATTGGATGTGAATGTGGAAAGCTAACGGCTCAAGAGATGTGCATATTTTGTAGGCTGGAGAAAAAGTATCTAGGGTACGACAAATCGCCTGAAGTTTCTGTGAACAACCTTTTTCAACCATCAACACAAACTGAGATGTACCATGGAGAGAGAGTGATTCTGTCATGTGGTATCGTAGATTCTAATGTTGTCCACATCAAAACTTCTCAACAACATTTTCAGGGTTGGTTGATAGAACTAAACTTGGACCACCTGGCTATGGCATTGTTTGGGATTCATGATATAAGACTACTCTGGTCAGATGATGACAGATTTAAAAAGCAATTTTCAGATCCTCAAGAAAGTGATTTTCAAGTTTATAAGAAGTTTGAGGCTTTCAGTATCTTTCCTCCATGCTACATTCATGACATAAGTTTCTGGATTACCGAGCACATGACAGAACATAATTTTTTCAAGGACATCTTTGAAACAACGCAAGGGTGTATACAGGATGTGCAGTTTATTGAAAGATATCATGACGCAGTGCGAGATAAAGTGAGTTATAATTATCGAATGATTTATAGTTCAAGTGACAGGCCTTTGTCACACATGCAGACTGTAAGGATGCAAAACCTCCTGAGAAGGAGGTTGCTGAGCTGTCACTATCACCTCAAGTAAAACATTGTTTACTCGCAAATGTGGGACATGGAATCTTTTTATCAGAAAGACACAAGAATGAGACAATATCTTTAATGCAAAAATATATTTTACTTTGCATCATCTTTAAAATAGCACTGATATTCCACTTTTTAACAGATAACACACAGAAAAACCGGTACTTTGTACAAGTCTAATACAATGCAAATAAACTATGGAAATGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BRP7	Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens OX=9606 GN=FDXACB1 PE=1 SV=3
Q3UY23	Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog OS=Mus musculus OX=10090 GN=Fdxacb1 PE=2 SV=2
O74952	Phenylalanine--tRNA ligase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mfs1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003851 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10354 all species →	BMT5-like	rRNA (uridine-N3-)-methyltransferase BTM5-like	Domain	Interproscan
PF01409 all species →	tRNA-synt_2d	tRNA synthetases class II core domain (F)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036690 all species →	Homologous_superfamily	Ferrodoxin-fold anticodon-binding domain superfamily	Interproscan
IPR019446 all species →	Domain	25S rRNA (uridine-N(3))-methyltransferase BMT5-like	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR002319 all species →	Domain	Phenylalanyl-tRNA synthetase	Interproscan
IPR005121 all species →	Domain	Ferrodoxin-fold anticodon-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11538 all species →	PHENYLALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070042 all species →	Molecular Function	rRNA (uridine-N3-)-methyltransferase activity	Interproscan
GO:0070475 all species →	Biological Process	rRNA base methylation	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0090.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.