Gene detail

Detailed information of amic_s0090.g36.t1 in Acropora microphthalma

Genomic Location: sc0000090_pilon:659014...703188
NR annotation: XP_044176390.1, voltage-dependent calcium channel subunit alpha-2/delta-2-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0090.g36.t1

ATGTCGGCCTTTTCAACGCGGGTTGTAGTTTTTTTCGGCGTCTTTTGTGCGTCGGCTATAACAGCTGGAGCATTTGACAGAAACGCTGTTACGAAATGGGCAAATGATGCCGGAGTAAAATTGTTGTCTTTCTTCAACACCACAACTAAATACTACAAGCTTCAAGAGCGTTACAACAAGACAATTCCGCTCTCCGTTTCGAAGCAACATGGGAGTAAAATTGTTCGCAACATGGCAAGTCGCCTCCAGGAAATTTTGCAGAACAAAATAGAGTCTATTAAGAATCTTGCTAATAAAACTGCAGAAGTACGACATAAATACACTTTCAACCCTTCACTTAAAAAGGTGGATTATTGGAACACCAAGGAACTGCCGGAAGAACATTTTAAAATTGATCCAAAATTTTCACAATCAATTAAGATCAACAAGAATGGCAGCGTGGTTCATATCCCAACCGATGTTTACAGTGGAGGAAGAAAGATTCTTAATACTATTGCATGGACAAACGAGCTGGATCCAGTTTTCAAAGACAATGACAAGGACAACCCCACACTGTTGTGGCAATACTTTGGAAGTTCAGATGGAGTTTATAGGGTGTACCCAGGTTTCAAATGGAGTAATGAAAGTCAGGATGTTTATGATAATCGTCGACGTGGGTGGTACATTCAGGGGTCAAGCTCTCCCAAAGATCTTGTTCTTCTTCTGGATTTgtcaattcagacaTATTCCAATACGGACAATGAGGACAAAGATAAGGTTCAGGCATACATGATTTGCCAAGTCTTGGATACATCTGATGAAAACCTCGTTGACACAAAGGAGAAAAACAAGGCCAAAAGCTGTTCGTCAGACCTTCTGCAAGCTACTCAACAGAACAAGAAGTATTTGAAGAACTTTGTTCCAAAGCTCAAAGCTCGGGGAATGGCTGCCTTCGATGGTGGATTTGGATCTGCTATTGATCTTCTGAAGAAATCAAAGAAAAATGGAAACACGACATCCTCTGGTTGCTCGCAATCTATCATTCTTTTCACTGATGGAATTGAGGAAAGCCAAGCAAAAGAGACTAGGAAAGTTTTAGAGCAAGAAAATGCTGATAAAAAGATCAGAGTGTTTACTTATCTTGTCGGAAGAGAGAAGAGTGCTACAGATCAACCATTGAAAAAGATAAGCGCTGATTACTATGGCTGTACCTTCAGGATTCAAACGCTTTCTGATGTCAGGGAAAAGGTTCTTGAATATGTAAAAATTCTCAGCCGTCCAGTAGGTTTTGCCACAGCAGACTCAGATCCGGTTACATCTTGGACTCCCATTTACCTCGACCAGCTGGGTCTTGGGTTGATGATTACTCTTGTTGCACCTGTTTTTAATAAATCCAACAGTGGTGAACTCTTAGGGGTAGTCGGGACGGATGTGGCGTTGCCCCAGCTAGAAGGCTCAGTTCCTAGGAGTGAGGTTGGTGTCAATGGATACGGATTTGTAATTAACAACAATGGCTTTGTCCTGTTTCATCCTGGCCTTGACAGAGAGAAAGATCCACCAAACATAGCACTTGACCAGGTGGAGTTCAACTCATCGCAAGCGAAGGAGTTAATGCGTGAAATGATTAGTAGGAAAACAGGAAAAATGACGTTCATAAACCGCGTAATTTCTAGCAACAAGCGTCGTATAAGTTGGAGTGAAGAGTTCCACTATTTCTACAGCCCTATTGCTGACACATCTTTCAGTGCTGCAGTGGCTATTCCAAAGAGCAGTATGAATTTTTCCGTGAATCATTCACTTGCCAAGGAGGTGTTGAAAAACGAACGTGACGAGTTCGTCATTGTCGCTCCATGGCAAATCTGTCGGGACACTCCTGTGGCAGCTTTGAACACAACACCAGTTTACCAGCCATCTTATGCTACAGCGCAAGACATCATAAATGACGTTAACTACAAAGATAATTGTAATCATCAAAAATTGAAGAACTTGCTTTTTGACGCTAACATTACGAAAGAATTGGCTGGGTCGTGGAGTGGAAAGGACGGAATTGAAAGTATCTTTGTGGCCACTGGAGTATTGGGGATGGAAATCAGTGAAACGAAACTCAATGAGGTTCTCTTTTCGAACGATACTTTAAGTACGGCTACTGAGTGTAACGATGAATCGGATTGTGTTGTGCTAGTGATCGACGACGATGGCTTCATTATAGCGACAAACCAGAAATCTAAGGTTGGAAAGTCGTTTGCCGATATGAAAAGTTGTGTCATGCAGGAACTTGTGAATAATGCCTCGTTTGAAAACCTGGAATTTACCAGTATTCAAGAGGAATGTGTTAAATCCGACACAGGAGACAGTTCCAGTGCCAGGACACTTTTAAATCCACTTTTTGCCGTGTCAGCGTACGTGCAATTTTGGACGCAAACTGTCTTTTGGTCTTTAGCGCAGTTCAACATTTACAGTTTCTTTTCACCCCGTGCTTCAGCTATGGCTGAGAATAAAGGAAGCGAGAAGCCGACAATGATCCCATGTTCCAAGAAATTGCCCTTCTACAAAGCTGTCTTGGAGTCCGAAAATAAAGTGTTTAACTGTGAGGACTCCACATCAAGCTGTTGTGGGTCATTTGTCATAGCAGCTATCCCGCACACGAATCTTCGGCTGGTCGTGATAAAGGAATGTGACACCTGCGACTCTCAGTCGTCAGCATCAAAGCGTATCCTTTAA

Transcript

amic_s0090.g36.t1

ATCTCCTTATTTGTCCTTGGAAGGCAATTATGGGAGTGAAGAAAGTCCAGAATTTGTGTTAGTGAGTCGCACAATTCGATCCAAAAGTAGCTAGAAATTCAAATTTGGATAATATTAAGAATACAGCTGAGGTCTTGGTTGTAGTCTGAAGATGTCGGCCTTTTCAACGCGGGTTGTAGTTTTTTTCGGCGTCTTTTGTGCGTCGGCTATAACAGCTGGAGCATTTGACAGAAACGCTGTTACGAAATGGGCAAATGATGCCGGAGTAAAATTGTTGTCTTTCTTCAACACCACAACTAAATACTACAAGCTTCAAGAGCGTTACAACAAGACAATTCCGCTCTCCGTTTCGAAGCAACATGGGAGTAAAATTGTTCGCAACATGGCAAGTCGCCTCCAGGAAATTTTGCAGAACAAAATAGAGTCTATTAAGAATCTTGCTAATAAAACTGCAGAAGTACGACATAAATACACTTTCAACCCTTCACTTAAAAAGGTGGATTATTGGAACACCAAGGAACTGCCGGAAGAACATTTTAAAATTGATCCAAAATTTTCACAATCAATTAAGATCAACAAGAATGGCAGCGTGGTTCATATCCCAACCGATGTTTACAGTGGAGGAAGAAAGATTCTTAATACTATTGCATGGACAAACGAGCTGGATCCAGTTTTCAAAGACAATGACAAGGACAACCCCACACTGTTGTGGCAATACTTTGGAAGTTCAGATGGAGTTTATAGGGTGTACCCAGGTTTCAAATGGAGTAATGAAAGTCAGGATGTTTATGATAATCGTCGACGTGGGTGGTACATTCAGGGGTCAAGCTCTCCCAAAGATCTTGTTCTTCTTCTGGATTTgtcaattcagacaTATTCCAATACGGACAATGAGGACAAAGATAAGGTTCAGGCATACATGATTTGCCAAGTCTTGGATACATCTGATGAAAACCTCGTTGACACAAAGGAGAAAAACAAGGCCAAAAGCTGTTCGTCAGACCTTCTGCAAGCTACTCAACAGAACAAGAAGTATTTGAAGAACTTTGTTCCAAAGCTCAAAGCTCGGGGAATGGCTGCCTTCGATGGTGGATTTGGATCTGCTATTGATCTTCTGAAGAAATCAAAGAAAAATGGAAACACGACATCCTCTGGTTGCTCGCAATCTATCATTCTTTTCACTGATGGAATTGAGGAAAGCCAAGCAAAAGAGACTAGGAAAGTTTTAGAGCAAGAAAATGCTGATAAAAAGATCAGAGTGTTTACTTATCTTGTCGGAAGAGAGAAGAGTGCTACAGATCAACCATTGAAAAAGATAAGCGCTGATTACTATGGCTGTACCTTCAGGATTCAAACGCTTTCTGATGTCAGGGAAAAGGTTCTTGAATATGTAAAAATTCTCAGCCGTCCAGTAGGTTTTGCCACAGCAGACTCAGATCCGGTTACATCTTGGACTCCCATTTACCTCGACCAGCTGGGTCTTGGGTTGATGATTACTCTTGTTGCACCTGTTTTTAATAAATCCAACAGTGGTGAACTCTTAGGGGTAGTCGGGACGGATGTGGCGTTGCCCCAGCTAGAAGGCTCAGTTCCTAGGAGTGAGGTTGGTGTCAATGGATACGGATTTGTAATTAACAACAATGGCTTTGTCCTGTTTCATCCTGGCCTTGACAGAGAGAAAGATCCACCAAACATAGCACTTGACCAGGTGGAGTTCAACTCATCGCAAGCGAAGGAGTTAATGCGTGAAATGATTAGTAGGAAAACAGGAAAAATGACGTTCATAAACCGCGTAATTTCTAGCAACAAGCGTCGTATAAGTTGGAGTGAAGAGTTCCACTATTTCTACAGCCCTATTGCTGACACATCTTTCAGTGCTGCAGTGGCTATTCCAAAGAGCAGTATGAATTTTTCCGTGAATCATTCACTTGCCAAGGAGGTGTTGAAAAACGAACGTGACGAGTTCGTCATTGTCGCTCCATGGCAAATCTGTCGGGACACTCCTGTGGCAGCTTTGAACACAACACCAGTTTACCAGCCATCTTATGCTACAGCGCAAGACATCATAAATGACGTTAACTACAAAGATAATTGTAATCATCAAAAATTGAAGAACTTGCTTTTTGACGCTAACATTACGAAAGAATTGGCTGGGTCGTGGAGTGGAAAGGACGGAATTGAAAGTATCTTTGTGGCCACTGGAGTATTGGGGATGGAAATCAGTGAAACGAAACTCAATGAGGTTCTCTTTTCGAACGATACTTTAAGTACGGCTACTGAGTGTAACGATGAATCGGATTGTGTTGTGCTAGTGATCGACGACGATGGCTTCATTATAGCGACAAACCAGAAATCTAAGGTTGGAAAGTCGTTTGCCGATATGAAAAGTTGTGTCATGCAGGAACTTGTGAATAATGCCTCGTTTGAAAACCTGGAATTTACCAGTATTCAAGAGGAATGTGTTAAATCCGACACAGGAGACAGTTCCAGTGCCAGGACACTTTTAAATCCACTTTTTGCCGTGTCAGCGTACGTGCAATTTTGGACGCAAACTGTCTTTTGGTCTTTAGCGCAGTTCAACATTTACAGTTTCTTTTCACCCCGTGCTTCAGCTATGGCTGAGAATAAAGGAAGCGAGAAGCCGACAATGATCCCATGTTCCAAGAAATTGCCCTTCTACAAAGCTGTCTTGGAGTCCGAAAATAAAGTGTTTAACTGTGAGGACTCCACATCAAGCTGTTGTGGGTCATTTGTCATAGCAGCTATCCCGCACACGAATCTTCGGCTGGTCGTGATAAAGGAATGTGACACCTGCGACTCTCAGTCGTCAGCATCAAAGCGTATCCTTTAAATTTTTTTTATAGTACAGCTGGAAAATTCTAGAAATCGCATAGTCAAagggttgtcttacacttggacatgataagattcgtggcgtattgtgtagacgtcacgaagtgtcttcctaacgctGACCATAAACAGAACCCTTTCCAAACAGTAGTAattgttatatagctgacgttttcctgctacagcgcCAACCGACGACAGTCAAGATAACCAACCAAAGCCCTGGAACACCAACGTCAGGTTCGGGCCTCATTTGCCTTGCTATGGTAGAGAAGAGGGGGAGAACCCTCCATGTGCTTTGGCAAGCCTTGCGTCTTCCCACTTTGCCATTGTGATTTTCTCGTTCATCGTAGCGTTAGGCGCTGGTAACTGGAGGTGAAAGAAATCAGCACAGCATACCCGATTTCCATTGGTTCGCATTACTTCAGAACTTCACAATCATGAAAAGTATTGAGTGCGTTTGTGTGGATAGGCAGCTTTTGTGCGTTACAATGTAGAGGCGAGAAGAAGATTCCGTTACTCGTTGTTAGTTTAGGGAATACTGCTTTAGTTCCTTGTCGAGATGGGACGGTGGCGCCCTTTCCGGTGGAAAAGCCAAGTGAACGAGGGTATCCTCGACCTAGCACAGGTTGCAATTTTCTTCTGTTTTATTGCAAAAAAGTAAAAATGAGTTTGTCTCAGCCCTTAGTAGCTGAAACCAATGGAAGCGGTTAAAGTGACAAATCTTATTGTGAAATAGTGTTAAGTGCTCCTCAGCTGAAGTATTAGACAAGTGTCACTTATTTATTTGTACTATTTATAGCGCAGATCAAGCGTGGTTTGAAATGAATTTAATTATCAGTGAGGTAGTGAACTGGAAAGAAGTATTGTACATAGGAACTAAATGTTCTTTTTGTTTGAGTTAACTGTGATGTAAAAAGCAAAGATAGACTTAGGCTCGCTTGAAAAATTTGAAAATTTGATGTTTTTTCTTTATTATTTTAGACGTTCTTAATTAAACTTGAACTGAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CFG5	Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Rattus norvegicus OX=10116 GN=Cacna2d3 PE=1 SV=1
Q9Z1L5	Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Mus musculus OX=10090 GN=Cacna2d3 PE=1 SV=1
Q8IZS8	Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Homo sapiens OX=9606 GN=CACNA2D3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000969 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08473 all species →	VGCC_alpha2	Neuronal voltage-dependent calcium channel alpha 2acd	Family	Interproscan
PF08399 all species →	VWA_N	VWA N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051173 all species →	Family	Voltage-dependent calcium channel subunit alpha-2/delta	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR013680 all species →	Domain	Voltage-dependent calcium channel, alpha-2/delta subunit, conserved region	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR013608 all species →	Domain	VWA N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10166 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0090.g36.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.