Gene detail

Detailed information of amic_s0092.g16.t2 in Acropora microphthalma

Genomic Location: sc0000092_pilon:177046...202852
NR annotation: XP_029198947.2, tudor domain-containing protein 1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0092.g16.t2

ATGGAAGAACTTAAGAAGAAAACAGCAGTTTTGCTTCGATCTGTTCTTGTCAGCAGTCCAAGAGGAGTCCCTCTTAGCCAGCTCAACAAAGAGTATAAGGTGTTTTCATACTCCAATATTCCTTTCAAGGAAATGGGTTTCAGCTCTGTTGAAATGTTTATCAAGAACATACCGGACGTGGCTTCTTTGAAAAGAAACAACGATGGCCAGTTAGTTGTAGTTGGAGTTGCCAGCGAAGCAGACAAGCACGTTGCTAAACTGATTGCAAGACAGAAGAAACCAAAAAAACGATCTAAAGCAGGTCAGCTTCGAAGACCAACCCCTGCAAAGAACTCGTTGGGTAAAAGAGTTGCAGTTGGACAATTTGCGACTGCACCAAGGCAGTTTGTATTTCCTGCCAACCAAGCATTTGCTACTAATATTCCGGCTTTACATTTAGCTGCCATTGGCAGTGGTCGCTTAGTTCAGACGAATCGTTTCATTCCACCGCGAATGAAGAACAGGGTAGGCAATCAGCCTTTTGGGAACAGAACTGTTTCACAGCAAAGATCTGGACCATTGCAAGTTCACATATCAAATACAAATAGCTCAAGAAAAGTTGAGCTTATGTCAGAGCCTGTTATCAACAGGACTGTTGTGGAGAGGGGAGTTGCTCGCCAAGTTGAGGAGCAAGCGCTGGAAATCGCTTCTGCAAATAGTATAAAGGTCACATCATCTTCTTGCTCAGAGAAATCTTCTGGAAAGAAATCATCAGACAGAAAATCAAGTAAAACAGACGATGAAGTAGTATACGCAAGAATTAAAGGGTTAATTGATGAAAAACCCAGGGGAATTTGGTTAAAGAGAATTGGTGCAGAATACAAGAAGATTTACAATGAGGAACTGAGTAGTGCAATACTGGAAAAGCTAAAAGATCTGCCAGCTATAGCAAGATGTGAAAATTGTCAAGATGACCTTGTGATTGTCTATCCATCAAAACCGGATGAAAAGGAATCCGTTGCAGAAGCTGTTGGTAAACAGGCTCATGAAGGACAGCAAAACGGATCTCCTTCAAAGTCTTTGGAACTTTACACTTTGCGACCTCAGGATCTTCCAGAAATGGGGTCTCTTTCAGAGGTCATCGTCTCCCATGTTGATAGTCCAACTCACTTCTTTATCCAGTACAATCAAAATGGGACACAAATTGAGGCCCTAGGGAACAAGCTGAACACTTTTTTAAAGGCTAACAACAGTGACACCTTGCCTACGGCAAATCAAGGCATGTTTTGCTGTGGTCAGTTTACTGAGGATGATTGCTGGTATCGTGCCAGAATAACCAAATGCGACGCCAAAGGAGACAAAGTTGAAGTCATTTACGTAGACTATGGCAATCACGAATCACTGACTTTGTCGCGACTGCGCATGCTGAGGAGAGACGAGGCTGAGTTGCCTATGATGGCTGTGTTGTGTGCACTCGATGGTGTGACATCGTTAGATGGGGAAAATTGGAGTGATGCCTCAATAGCAAGATTCAAAGAGCTCTGCGAGGTGGAAATGTTAAGGATGAAAGCTGTTAGAGCTAAAGATCATCACTTGTATGTTGAACTCAAGGATCCAAAAGGGAATGATCTTAGAACTGTGTTGCAATGGGAGGGTCTCGCCAAGCGAGAATCTGATGACTCGTCAAGTACCAACTCAACAAGTGGAAGTTCTTCATCGAAATCCTCGTCCCTGACAAACTCATCTTCAACAGATTCATTTTCATCCGTCACCACCACAGCTTCGTCGTCATCATCTCAAGGACTTGCAAGTCCTGTGCGTGCTTTCAGTAGCACCAGAGGTGAGAAGGAAACCAAAGAACCTGAAACAAAATCGTCAAGTGCTCCACGGTCTTTCCTTAGAGTCAACAGGTTGCTCTCTAAGGAAGAAGAAGTTCAGAAAATACCTGGGAGAGTCCAAATTCCCAATGAGGATTATCTGGACGTGTTTGTTTGCAATGTCCACAGCACACACAACATATGTGTCAATCTTTGTGGAGAAAACTATTCAGAAAAACTGACAGCTTTGGAACAGAGCATGCTCTGTCATTATGAAGAACCGTCTTCTGCAGAGCCAATCCGAGTTGCTCCTGGTGGAGTATATGCCACTTATTCCAAAGAAATCCATTCAGAGGGCTTGTGGTATAGGGTCAAAGTTGTTAAAGTCAAGGCTGATAATGTACAAATTGAGTATTTGGATTATGGAGAGACTGGAACAGTGGCTGTTTCATCTCTGAGGACTATCCCACAACGATTCTTGGAATTGCCATTTCAGGCAGTCACCCTCAGTCTTCATGGAGTTCCAAACACGAAGAACGCTGAGGTGATTCTGAAGTTGAAGCATTTGACACTCAACAAAGACCTTGTGGCAGAAGTTAAAAGGAAGAATGAAGATGTTGTAGCTGTTGAACTCTTTGACACATCATCAGATGACATCGATATAAACCTGAACAGAATATTGTTACTTCTTCCCGATGAAGATATGAAACCTAATTTGCCAAAGCCTGGAGGACAGATTGAAGCATTTGTAACATATGCAACACAGGAGGGCCATGTATTTGTACAGACCCTTGGAGGAGGAGCAACTCGCTTGGAGGAACTCATGAACGATATTGCTGAACACTATTCCCAGCCAACCAAAGCTGCAGAATTTGTGTCTCGTCCTCAGAAAGAGAAGATCTACTGTGCCAGGTGCTCTGTAGATGGGGTCTGGTACAGAGCCCTGGTCACTCAAGTGTTGCCAGAGAGACATGTTGAAGTCCATTATGTTGATTACGGGAATTACGAGAAACTTCCAATTTCAAGTCTGCGAGAACCAGCAAAGGCCATTAGCCATGTTAATTCCCTGCCTTTTCAGGCTGTGGAGTGTAGACTTGATGGTACAGATAAGAAACCATTGACTGAAGAGCAAACCTATATGATACTGGAAAAGGAGGTCTTACTTGAGGTGTTGACTACCTCTCATCTGCCGATTGTGAGATTATTTGTGCTATCAGAGGAAGATGAAATGACATTAATGAACGTGTCAGACCTGATGGGAATAGAAACTGAGGCACAAGATGAGGTCATTAACACAGAGCAGTCAACTGAAGGgtccctactAAGACACATAGCCAACTATGTATCAGCTAAGTATTATCTGGCTTATTTTCAGTGCTTAGAAATGCTACAACAGTTAGAAGAACTTGAAGACAAAATACAGGAGTATTATGCTAATACACCAAGGACTTCGTTCAAGAATGTCAGACAGGGTGTGTTGTGTGCTGCTCTATACTCCGAGGATAATACTTGGTACAGGGCGATAGTCGAAACTTCTTTGTCTCCACAGAAGATTTGTGTGTTTTTTGCCGATTATGGGGACTTCAATATCGTGCCGTTGATGAACCTCCAGGTCTTGCCGGATGAGTTCAAACAATTGCCGCTTATGGCTGTGCGAGGCTGTCTGCATGGGGTGGAGCCGGTAGGAGATAACCTAGCAGAGTGGTCAGAGGAAGCTGTAGAGAGGTTTAAGGAGCTGACATTGGGAAAGAAACTGGTGGCAAAGCCCAAAGGTTTGGTACACCGCATTGGTCACTCCGCGAACGGCGACACTAAAGTATCACTCAAACTGTATGATACATCAGAAGGAAATAAAGACGTGTTGCTTTCTGAGGTGTTGGTTAAAGAGGGATTAGCAAGAGAAATAAACGAAAGTTGA

Transcript

amic_s0092.g16.t2

CTGCTTGTGTGCTGCGACAGATTCCTTTCATTCACTGCTTCAGTTCGTTCTAAATATATTCAAAATTGGACTTCATCGGCATCGTATGCATTCTCAGGGATGCGGTGTCTTGGTTTGATTTATGTTGACGTTAGCGCATGCAAATTTTCTCTTCTATTTTCCATGCTCCTTTGTTTCATATGGTTGAGGACATGAAAGTCCACTTTATATCAAGTACTGTTTAACGAAATTTATTCCCAGTACTTCACTTCTTAGCATCTAAAGAGGAGGACCCATGTTTGTGGAGTAAACGTGCGCGAAACTTTGACTCTAAAACAGGCGGAAGTCTGTCAGTGCAATTTACATTCTGGCACATCTTTGAATTGAGATTGAACAAAAACTATCCTTTCCTTTGAGAAATGGAAGAACTTAAGAAGAAAACAGCAGTTTTGCTTCGATCTGTTCTTGTCAGCAGTCCAAGAGGAGTCCCTCTTAGCCAGCTCAACAAAGAGTATAAGGTGTTTTCATACTCCAATATTCCTTTCAAGGAAATGGGTTTCAGCTCTGTTGAAATGTTTATCAAGAACATACCGGACGTGGCTTCTTTGAAAAGAAACAACGATGGCCAGTTAGTTGTAGTTGGAGTTGCCAGCGAAGCAGACAAGCACGTTGCTAAACTGATTGCAAGACAGAAGAAACCAAAAAAACGATCTAAAGCAGGTCAGCTTCGAAGACCAACCCCTGCAAAGAACTCGTTGGGTAAAAGAGTTGCAGTTGGACAATTTGCGACTGCACCAAGGCAGTTTGTATTTCCTGCCAACCAAGCATTTGCTACTAATATTCCGGCTTTACATTTAGCTGCCATTGGCAGTGGTCGCTTAGTTCAGACGAATCGTTTCATTCCACCGCGAATGAAGAACAGGGTAGGCAATCAGCCTTTTGGGAACAGAACTGTTTCACAGCAAAGATCTGGACCATTGCAAGTTCACATATCAAATACAAATAGCTCAAGAAAAGTTGAGCTTATGTCAGAGCCTGTTATCAACAGGACTGTTGTGGAGAGGGGAGTTGCTCGCCAAGTTGAGGAGCAAGCGCTGGAAATCGCTTCTGCAAATAGTATAAAGGTCACATCATCTTCTTGCTCAGAGAAATCTTCTGGAAAGAAATCATCAGACAGAAAATCAAGTAAAACAGACGATGAAGTAGTATACGCAAGAATTAAAGGGTTAATTGATGAAAAACCCAGGGGAATTTGGTTAAAGAGAATTGGTGCAGAATACAAGAAGATTTACAATGAGGAACTGAGTAGTGCAATACTGGAAAAGCTAAAAGATCTGCCAGCTATAGCAAGATGTGAAAATTGTCAAGATGACCTTGTGATTGTCTATCCATCAAAACCGGATGAAAAGGAATCCGTTGCAGAAGCTGTTGGTAAACAGGCTCATGAAGGACAGCAAAACGGATCTCCTTCAAAGTCTTTGGAACTTTACACTTTGCGACCTCAGGATCTTCCAGAAATGGGGTCTCTTTCAGAGGTCATCGTCTCCCATGTTGATAGTCCAACTCACTTCTTTATCCAGTACAATCAAAATGGGACACAAATTGAGGCCCTAGGGAACAAGCTGAACACTTTTTTAAAGGCTAACAACAGTGACACCTTGCCTACGGCAAATCAAGGCATGTTTTGCTGTGGTCAGTTTACTGAGGATGATTGCTGGTATCGTGCCAGAATAACCAAATGCGACGCCAAAGGAGACAAAGTTGAAGTCATTTACGTAGACTATGGCAATCACGAATCACTGACTTTGTCGCGACTGCGCATGCTGAGGAGAGACGAGGCTGAGTTGCCTATGATGGCTGTGTTGTGTGCACTCGATGGTGTGACATCGTTAGATGGGGAAAATTGGAGTGATGCCTCAATAGCAAGATTCAAAGAGCTCTGCGAGGTGGAAATGTTAAGGATGAAAGCTGTTAGAGCTAAAGATCATCACTTGTATGTTGAACTCAAGGATCCAAAAGGGAATGATCTTAGAACTGTGTTGCAATGGGAGGGTCTCGCCAAGCGAGAATCTGATGACTCGTCAAGTACCAACTCAACAAGTGGAAGTTCTTCATCGAAATCCTCGTCCCTGACAAACTCATCTTCAACAGATTCATTTTCATCCGTCACCACCACAGCTTCGTCGTCATCATCTCAAGGACTTGCAAGTCCTGTGCGTGCTTTCAGTAGCACCAGAGGTGAGAAGGAAACCAAAGAACCTGAAACAAAATCGTCAAGTGCTCCACGGTCTTTCCTTAGAGTCAACAGGTTGCTCTCTAAGGAAGAAGAAGTTCAGAAAATACCTGGGAGAGTCCAAATTCCCAATGAGGATTATCTGGACGTGTTTGTTTGCAATGTCCACAGCACACACAACATATGTGTCAATCTTTGTGGAGAAAACTATTCAGAAAAACTGACAGCTTTGGAACAGAGCATGCTCTGTCATTATGAAGAACCGTCTTCTGCAGAGCCAATCCGAGTTGCTCCTGGTGGAGTATATGCCACTTATTCCAAAGAAATCCATTCAGAGGGCTTGTGGTATAGGGTCAAAGTTGTTAAAGTCAAGGCTGATAATGTACAAATTGAGTATTTGGATTATGGAGAGACTGGAACAGTGGCTGTTTCATCTCTGAGGACTATCCCACAACGATTCTTGGAATTGCCATTTCAGGCAGTCACCCTCAGTCTTCATGGAGTTCCAAACACGAAGAACGCTGAGGTGATTCTGAAGTTGAAGCATTTGACACTCAACAAAGACCTTGTGGCAGAAGTTAAAAGGAAGAATGAAGATGTTGTAGCTGTTGAACTCTTTGACACATCATCAGATGACATCGATATAAACCTGAACAGAATATTGTTACTTCTTCCCGATGAAGATATGAAACCTAATTTGCCAAAGCCTGGAGGACAGATTGAAGCATTTGTAACATATGCAACACAGGAGGGCCATGTATTTGTACAGACCCTTGGAGGAGGAGCAACTCGCTTGGAGGAACTCATGAACGATATTGCTGAACACTATTCCCAGCCAACCAAAGCTGCAGAATTTGTGTCTCGTCCTCAGAAAGAGAAGATCTACTGTGCCAGGTGCTCTGTAGATGGGGTCTGGTACAGAGCCCTGGTCACTCAAGTGTTGCCAGAGAGACATGTTGAAGTCCATTATGTTGATTACGGGAATTACGAGAAACTTCCAATTTCAAGTCTGCGAGAACCAGCAAAGGCCATTAGCCATGTTAATTCCCTGCCTTTTCAGGCTGTGGAGTGTAGACTTGATGGTACAGATAAGAAACCATTGACTGAAGAGCAAACCTATATGATACTGGAAAAGGAGGTCTTACTTGAGGTGTTGACTACCTCTCATCTGCCGATTGTGAGATTATTTGTGCTATCAGAGGAAGATGAAATGACATTAATGAACGTGTCAGACCTGATGGGAATAGAAACTGAGGCACAAGATGAGGTCATTAACACAGAGCAGTCAACTGAAGGgtccctactAAGACACATAGCCAACTATGTATCAGCTAAGTATTATCTGGCTTATTTTCAGTGCTTAGAAATGCTACAACAGTTAGAAGAACTTGAAGACAAAATACAGGAGTATTATGCTAATACACCAAGGACTTCGTTCAAGAATGTCAGACAGGGTGTGTTGTGTGCTGCTCTATACTCCGAGGATAATACTTGGTACAGGGCGATAGTCGAAACTTCTTTGTCTCCACAGAAGATTTGTGTGTTTTTTGCCGATTATGGGGACTTCAATATCGTGCCGTTGATGAACCTCCAGGTCTTGCCGGATGAGTTCAAACAATTGCCGCTTATGGCTGTGCGAGGCTGTCTGCATGGGGTGGAGCCGGTAGGAGATAACCTAGCAGAGTGGTCAGAGGAAGCTGTAGAGAGGTTTAAGGAGCTGACATTGGGAAAGAAACTGGTGGCAAAGCCCAAAGGTTTGGTACACCGCATTGGTCACTCCGCGAACGGCGACACTAAAGTATCACTCAAACTGTATGATACATCAGAAGGAAATAAAGACGTGTTGCTTTCTGAGGTGTTGGTTAAAGAGGGATTAGCAAGAGAAATAAACGAAAGTTGAATGCATGGCGAACAAGGCGAAAGGGTGACATAATTTCAACACATCTGCAGATGATGCGAACGATAGGAGCTAGTTCCGATGTATTGGAAAGTACGCCTACAGTTCAACATAAGTTGTCGGGATTTGACTTTCAGTGAAAAACTGAGACAAGATACAGAAGGAGAGAAGACTGAAACAAATCACGTCCTCGCTTCTCAGCCAGCCTTTATGAATCCAGCTAGGTCACGCATCTTGGCGTGACATGCAATACCCAGTCTTTAGACTGCAATAGTTGAGAACCCATTTTGTTGGGATGATTTCGTAGTCGCCATTACTTTGATTTACATTTTCCGTATGAGAGGAACTGCGTGCTTTTAAGTAGTAAAGCAGTGTCGTTTTTTAGATTTGGCAAGTTGCGTGACAACAAGCATGATGATAAAGTAGTGACCGTTTGAACGCCATCACTGTGTACTGGATGTAACTCGTAGGGTACTCGGTGCTTTCTGTGGGATACATCGCTCTGATGTCCAGAGATGTACTTATTTCAACGTAGCCTCAATCGTCACAATGTCCACCTCTCCCTAACTTAGAGTTAGCGTCTGTGTTATGTTGTGATTTTTCAGGGCCGAGTTTATTCGGAGCAGCGTTATCGCTAAACCAGGTTAAATATCATGGTAACCTACAGATTTTGATTTTAACCTGAGATGAGAGCTAACGCTGCTTCGAAAAACTCGGCCCaggttacgattagggattactgtttttgcttacttgcggagcagagctattaggatactatatgacaagttatgtgtgtttttgtcaccacgaaaagtaagaggggacatttgtgacgcccattgaaatcggcaATTCGCGCTTACCCGGAGAATAATGTGTTATCCATCTGGGAGTGATTTGTCCACTCGATAGCTCTGTCCACCTTTTGAAAAACGGAGAAACTCCTGTTTTAAGCTGTAACTCCGTGTTTTTTACATGATGATGATAATGattattattattattattattattattattattattattattattattattTTCTTTTCATGATAAAAGACTCCAGCACTAGCAAGAGATGAGTCAACCTCGCCCCCAGGGTCTCTTTTCTGCCCAAGAGGAGAAACCCTAGGGACGAAGTTTGAATAGGGTTACAGGTGATTTACGGTTAACGCATTCTTTTGCTTCTTTTGGTCATGTTAAGGCAACGCGTTTCGTCCATTTTCACAGTAATTCTGTCATGTTCAGTTGAAACGAAATAAACTCATATTGCGAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BXT4	Tudor domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TDRD1 PE=1 SV=2
Q8K1H1	Tudor domain-containing protein 7 OS=Mus musculus OX=10090 GN=Tdrd7 PE=1 SV=1
A6QLE1	Tudor domain-containing protein 7 OS=Bos taurus OX=9913 GN=TDRD7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003899 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan
PF12872 all species →	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR041966 all species →	Homologous_superfamily	LOTUS-like domain	Interproscan
IPR025605 all species →	Domain	OST-HTH/LOTUS domain	Interproscan
IPR050621 all species →	Family	Tudor domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22948 all species →	TUDOR DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0092.g16.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.