Detailed information of amic_s0092.g89.t2 in Acropora microphthalma

Genomic Location: sc0000092_pilon:905842...920909
NR annotation: XP_029195727.2, PHD finger protein 20-like protein 1 isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2VE56PHD finger protein 20-like protein 1 OS=Bos taurus OX=9913 GN=PHF20L1 PE=2 SV=1
A8MW92PHD finger protein 20-like protein 1 OS=Homo sapiens OX=9606 GN=PHF20L1 PE=1 SV=2
Q8CCJ9PHD finger protein 20-like protein 1 OS=Mus musculus OX=10090 GN=Phf20l1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002607 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20826
all species →		PHD_5PhD finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR019786
all species →		Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR043449
all species →		FamilyPHD finger protein 20-likeInterproscan
IPR016197
all species →		Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan
IPR002999
all species →		DomainTudor domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15856
all species →		PHD FINGER PROTEIN 20-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016573
all species →		Biological Processobsolete histone acetylationInterproscan
GO:0044545
all species →		Cellular ComponentNSL complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0092.g89.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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