Gene detail

Detailed information of amic_s0094.g17.t1 in Acropora microphthalma

Genomic Location: sc0000094_pilon:324116...335930
NR annotation: XP_048588174.1, uncharacterized protein LOC125556677 isoform X1 [Nematostella vectensis]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0094.g17.t1

ATGCCCGCCCCAGCCGTAGGAATCGATCTTGGCACTACCTATTCATGTGTTGGCGTTTTCCAGCACGGTAAAGTCGAAATTATCGACAATGATCAAGGAAACAGAAGAACTCCCAGTTATGTTGCCTTCAATGATACGGAGAGGCTCATCGGTGATTCAGCAAAAAATCAAGTCGCTCGCAATCCATCAAATATACTGTGTTTGAATTTCTCCCCACTCCTCCGACGTCGACCGGAACATGAAAGTTTGTTGTCCCCTCCAAATGAGAACAAAGAATTATCAGTCAAGTCCTACACTCACACAGGACACCCACCTCATATAGGACCTTCAGCCAACATAGCCCCAACTGACATAGAAAAGCAAGCCGCTTCCTTTCCTGACACCGGACTGTTGGCTTCACTCCATCCCGACACAGGCTATCCAACAACATCTCGCGATGCTCCGGCCGTTACTACCAGCCTGAGGCCTGTCCATCCGTCTGCCTTTGACCTACGTCCGTGCGCCGACCCCTTCACCCCTGAGTGTACTCCGTACGTTCAAGGTCAGAATCGCACTCCTCCAAATTCAGACTCAGGCTTCCAAATTGCCGAGGCTTTGGCCAAGGTAACTCAGCTGCAACGCCTCCCGCAGGCCAAGCCGGACGTTTTCACTGGTAACGAGACAGACACTAAATTCTTTACTTGGGAAACAGCTTTCGACGCTCTAATCGACTCCGCACCGATTAGCGCTCAACAGAAACTGTATCTCCTCTATCAGCACTTGGATGGAAAGGCGAAGAAAGTCGTTGAGCAACTGCAGTACATGGTCAGCGCGAGCCCAGAAATAGCGTACAGTGAAGCAAGAAAGAAACTGAAGTCGCGCTCTGGTCGCCCCGCGATTATAGCTACCGACTTTGAAAACAAACTGGTTAATTGGCCTAAAATCGGCAGCAATGACGCCCGAGGCCTGAGAGAATTCAGCGACTTCCTACAACAAGTCGAAATAGCAAAAAACCACCTTGATAGTCTTAAGATTTTTGAATATCATTCCAAGCTACAAACCTTAGTCAAAAAGCTCCCCAGTCGGTTCCTAACAAAGAGGTCTACAACGGTGCAAACCTTACAACAAAGGAAAGGTTGCGATGCATTCCCGACCTTTGCTGAGTTTGTCGAGGAAGTAACCTTCCATGCTGATCGCATGAACATTCCACAGATTTTCCGCCACGCAACCAAAGACCCAAATCCACCTGCCCCCCTGCCACGTAAAAAGCTACCCGTTTCTATTAACTTGGCCTCGAAAACAAGCGGCGAACGCGAAGTCCCATCCCCCGAATCAAAGAAGGCGAAATCAGAAGGCAATTATATTTCTAAGTTCTGTCTTTTTCACAAAACCAAATCTCACACGCTAAACGAGTGCAAGAAATTTCGAGAGCTAACCTGGGAAGAAAAACGAGACTTCTTCAAGAAAAACAAACTTTGTTTTAAGTGTATGGCTCCCAGCAAGCATAATGCCGAAAATTGTGATCAAACACCTCCAGTGTGCGACATTTGCCACAAGAGACATTTGACAGCGCTACATTCGGAGACAACGCCCGATCACAAGGAGAAACCTAATGCCCCAGAAGCCAAAAATACATCTACAGCTTGCACGCAAGTCTGCGGGGAGGAGGAAACCAGTAGGTCGTGTGCCAGAATCGTCCTCGTACAAGCATCCCATCAGTCTAACCCAGCTAGAAAATTAACAACGTATGCAGTCCTTGACGACCAATCCACAGATGTCTTTATCTCCGACTCCTTGCTAGAGCGTCTGGAAGTAGATGCGCCAGAAGTCGACCTACAGGTTAACACAATCGTAGGCTCAAACTCAATCAGAACAAAGAAAGTAACCGGATTGTCCATTCAAGACACAGAAAATGGTTATGCCCCAATTAAAGTCCCGTTTGCGTACTCACGAGAGTTTATCCCTGCTTCTCACGAGGATATCGCCACACCCCAAGTAGCCAAGCAGTGGAAACATCTGTCTCACATCGCAGACAAGATACAGCACCGCCCCGATGTCGATATTGGTCTACTCATCGGCCGAAATGTCCCAGCCGCCTTCCAGCCAATTAAGCATTCAAGGACTAATGCAGCCTCGGTCAAGCGAGTAACAGTCGAAAGAGAAATGCTCCTAGATAGCTGTGAGGAAGTGCCCATAACACCTCCATTCAAGAACTTCATGAGTTCAAAAGACCTCACAAGCCCGAAGCAAGTACGCGAAATGATGGAGCACGACTACAGCGAGATTCACCACACCCGCAAGATTCGTGGAACCGAACAATCCGAGTCCATTGAGGTCAAACGCTTTAGAGAAATACTTACCAAAGGCCTGCACAAGAATGTAAACGGAAACTGGGAAGCACCACTGCCCTTCAAATCTAACGACCTGTCATTACCCGACAATAAAGGGTACTGTTTGAGAAGGCTTCTATCACTTAAAAGAAGGCTTTTAAACGACAGCAATTTGAAAgaagattacctagcttttatgaaaaagacactggataacggccacgccagtagggttcctgatgatcaactgagtacagaaaagggcaaagcatggtttcttccacacttcaacgtatatcatccgagaaaaccggatcaaatccgagtcgtgtttgactgcagcgccgtcttcgaaaacgaatcgctaaacaaacatctgttccaaggcccagatcagctgaattccttgaccggagtgttgacacgatttcggaaagaaaaggtcgccttcacctgtgacattgagcaaatgttccacagtttttacgtcaaccctgaggataggaacttcttgcgcttcctgtggttcaaaaacaacgatctaaccaaaccaatagtccagtatcaaatgttcatctctttggtgcagcgtcctctcctagagtggcaaacttctgcttacatcaaacagcagaaactcacagacaggactttggaaacatcacATCGCCAGAGTGCGCGGAAGAGAAACAGCATCGTCAAAGTCAACAGCAACCTTCACAAGCTGGACCCATTCATTGATAAAGAAGGCCTCCTTAGAGTTGGTGGCCGACTCAGGGCTACAACATCCCCGTATGgaatcacgcatcctgttatcgtgccaaaaaagagccacgtgactgttctcctcatacgccagttccatcatgggaagcagcatcaccaagattacggcatgacccacaatgctatccgccaagctggatactatattatcaatggtcgttccgcagtttcccacgtcgttgccaagtgtgtaacgtgtcgtaggttacgtggccacgcccaagaccaaaagatggcggatctaccccctgagcgaacaacaccagctcctccattcacttacactggaatggatgtgtttggcccgttctacatcaaagaaggacgaaaagagttaaaaagatggggactaatatttacctgtctctcttctcgcgcgatacacttggaaaccctaaactcgatgacaacagactcgttcctgaatgcactcagacgctttatcagtcgcagaggaaagGTCGTAAGCGAAGGTGGGAGACCGAAGATTAGGGTGGAACACAAAGGAGAGACAAAAACTTTCTATGCAGAAGAGATTTCTTCTATGGTTCTGACGAAAATGAAAGAAACTGCTGAGGCTTATCTGGGAGAGAAGGTTACTGACGCTGTTGTGACTGTGCCAGCATATTTCAACGATTCTCAGAGGCAAGCAACCAAAGATGCCGGCATCATTGCTGGTCTTAATGTTCTTCGTATTATGAATGAACCCACCGCTGCGGCCATGGCTTATGGATTGAACAAGAAAAAACGCAGGGAGAGCAATGTGCTCATATTTGACTTGGGTGGTGGTACATTTGACGTTTCTGTTCTCACCATCGATGATGGCATCTTTGAAGTGAAGGCAACAAGAGGATATACACATCTTGGTGGGGAAGACTTTGACAATCGTATGGTTGACTATTTCAAGAAAGAATTCAAGAAAAAGCATAAAAAAGAAATTTCAGACAATAAACGGGCTATGTGCCGCCTGAGAACTGCGTGCGAGAAAGCAAAGAGGACCCTGTCTACGAGTGTCCAGGCCATGATTGAAATAGACTCCCTTTACGAAGGTATTGACTTCTATGAGCCAATCAGCCGTGCCAAGTTTGAGGAAATCAATGCTGATCTGTTCAGAGGCACCATTGAACCAGTTAATGAGGCAATTAGAGATTCCAAGTTGCACAAGACAGAAATCCATGAAGTGGTATTAGTTGGACGCTCTACTCGCATTCCTAAAATTCAGCAATTACTAAAAGAATTCTTCGGCGGTACAAAGGAGCTGAACAAGAGTATCAATCGCGATGAAGCTGTTGCCTATGGTGCTGCAGTACTGGCTGCCATTTTGAAGGGAGATAAAAGCGAAGCTGTCGCAGACTTCCTCTTTTTGGATGTGGCTCCCTTGACACTCGGTATTGAAACCAAAGGAGGCGTGATGAAGTCGCTCATCCAACGCAACAGACCAATTCCCACGAAGATGAGCCAGATGTTCACCACTTATTCAGACAACCAACCTGCTGTATTGATTCAAGTGTTTGAAGTACTGGCAAAGAAAACAAGATTGTCATCACCAATGACAAAGGTCGGTTATCCAGAGAAGATGGTTAAGGATGCGGAGAAGTACAAAGCAAAGGACGACCAGCAACGGGACAAGGTTCAAGCAAAGAACAGCTTAGAAAGCTATGCCTATAACATTATTGACAAGTGCAAAGAAGTGATTGAGTGGTTGAAGAAAACGGATGCAGCAGACAAGGAAGAATATGAAGCTAAAAAGAAAGAGCTAGAGAAACTTTTCAATCCCATCATCGCAAAACCTTATCAGAGTGCTGGAGGTGCCGGAGGAATGCCTGGTGGAATATCTGGAGGAGGAGACTTCACTGGAGCTCACGCTGGTGGACCGTAA

Transcript

amic_s0094.g17.t1

CTGAGTGCACCATCCTATTAGTTTTACTATTTCGTCGCTCAAAATGCCCGCCCCAGCCGTAGGAATCGATCTTGGCACTACCTATTCATGTGTTGGCGTTTTCCAGCACGGTAAAGTCGAAATTATCGACAATGATCAAGGAAACAGAAGAACTCCCAGTTATGTTGCCTTCAATGATACGGAGAGGCTCATCGGTGATTCAGCAAAAAATCAAGTCGCTCGCAATCCATCAAATATACTGTGTTTGAATTTCTCCCCACTCCTCCGACGTCGACCGGAACATGAAAGTTTGTTGTCCCCTCCAAATGAGAACAAAGAATTATCAGTCAAGTCCTACACTCACACAGGACACCCACCTCATATAGGACCTTCAGCCAACATAGCCCCAACTGACATAGAAAAGCAAGCCGCTTCCTTTCCTGACACCGGACTGTTGGCTTCACTCCATCCCGACACAGGCTATCCAACAACATCTCGCGATGCTCCGGCCGTTACTACCAGCCTGAGGCCTGTCCATCCGTCTGCCTTTGACCTACGTCCGTGCGCCGACCCCTTCACCCCTGAGTGTACTCCGTACGTTCAAGGTCAGAATCGCACTCCTCCAAATTCAGACTCAGGCTTCCAAATTGCCGAGGCTTTGGCCAAGGTAACTCAGCTGCAACGCCTCCCGCAGGCCAAGCCGGACGTTTTCACTGGTAACGAGACAGACACTAAATTCTTTACTTGGGAAACAGCTTTCGACGCTCTAATCGACTCCGCACCGATTAGCGCTCAACAGAAACTGTATCTCCTCTATCAGCACTTGGATGGAAAGGCGAAGAAAGTCGTTGAGCAACTGCAGTACATGGTCAGCGCGAGCCCAGAAATAGCGTACAGTGAAGCAAGAAAGAAACTGAAGTCGCGCTCTGGTCGCCCCGCGATTATAGCTACCGACTTTGAAAACAAACTGGTTAATTGGCCTAAAATCGGCAGCAATGACGCCCGAGGCCTGAGAGAATTCAGCGACTTCCTACAACAAGTCGAAATAGCAAAAAACCACCTTGATAGTCTTAAGATTTTTGAATATCATTCCAAGCTACAAACCTTAGTCAAAAAGCTCCCCAGTCGGTTCCTAACAAAGAGGTCTACAACGGTGCAAACCTTACAACAAAGGAAAGGTTGCGATGCATTCCCGACCTTTGCTGAGTTTGTCGAGGAAGTAACCTTCCATGCTGATCGCATGAACATTCCACAGATTTTCCGCCACGCAACCAAAGACCCAAATCCACCTGCCCCCCTGCCACGTAAAAAGCTACCCGTTTCTATTAACTTGGCCTCGAAAACAAGCGGCGAACGCGAAGTCCCATCCCCCGAATCAAAGAAGGCGAAATCAGAAGGCAATTATATTTCTAAGTTCTGTCTTTTTCACAAAACCAAATCTCACACGCTAAACGAGTGCAAGAAATTTCGAGAGCTAACCTGGGAAGAAAAACGAGACTTCTTCAAGAAAAACAAACTTTGTTTTAAGTGTATGGCTCCCAGCAAGCATAATGCCGAAAATTGTGATCAAACACCTCCAGTGTGCGACATTTGCCACAAGAGACATTTGACAGCGCTACATTCGGAGACAACGCCCGATCACAAGGAGAAACCTAATGCCCCAGAAGCCAAAAATACATCTACAGCTTGCACGCAAGTCTGCGGGGAGGAGGAAACCAGTAGGTCGTGTGCCAGAATCGTCCTCGTACAAGCATCCCATCAGTCTAACCCAGCTAGAAAATTAACAACGTATGCAGTCCTTGACGACCAATCCACAGATGTCTTTATCTCCGACTCCTTGCTAGAGCGTCTGGAAGTAGATGCGCCAGAAGTCGACCTACAGGTTAACACAATCGTAGGCTCAAACTCAATCAGAACAAAGAAAGTAACCGGATTGTCCATTCAAGACACAGAAAATGGTTATGCCCCAATTAAAGTCCCGTTTGCGTACTCACGAGAGTTTATCCCTGCTTCTCACGAGGATATCGCCACACCCCAAGTAGCCAAGCAGTGGAAACATCTGTCTCACATCGCAGACAAGATACAGCACCGCCCCGATGTCGATATTGGTCTACTCATCGGCCGAAATGTCCCAGCCGCCTTCCAGCCAATTAAGCATTCAAGGACTAATGCAGCCTCGGTCAAGCGAGTAACAGTCGAAAGAGAAATGCTCCTAGATAGCTGTGAGGAAGTGCCCATAACACCTCCATTCAAGAACTTCATGAGTTCAAAAGACCTCACAAGCCCGAAGCAAGTACGCGAAATGATGGAGCACGACTACAGCGAGATTCACCACACCCGCAAGATTCGTGGAACCGAACAATCCGAGTCCATTGAGGTCAAACGCTTTAGAGAAATACTTACCAAAGGCCTGCACAAGAATGTAAACGGAAACTGGGAAGCACCACTGCCCTTCAAATCTAACGACCTGTCATTACCCGACAATAAAGGGTACTGTTTGAGAAGGCTTCTATCACTTAAAAGAAGGCTTTTAAACGACAGCAATTTGAAAgaagattacctagcttttatgaaaaagacactggataacggccacgccagtagggttcctgatgatcaactgagtacagaaaagggcaaagcatggtttcttccacacttcaacgtatatcatccgagaaaaccggatcaaatccgagtcgtgtttgactgcagcgccgtcttcgaaaacgaatcgctaaacaaacatctgttccaaggcccagatcagctgaattccttgaccggagtgttgacacgatttcggaaagaaaaggtcgccttcacctgtgacattgagcaaatgttccacagtttttacgtcaaccctgaggataggaacttcttgcgcttcctgtggttcaaaaacaacgatctaaccaaaccaatagtccagtatcaaatgttcatctctttggtgcagcgtcctctcctagagtggcaaacttctgcttacatcaaacagcagaaactcacagacaggactttggaaacatcacATCGCCAGAGTGCGCGGAAGAGAAACAGCATCGTCAAAGTCAACAGCAACCTTCACAAGCTGGACCCATTCATTGATAAAGAAGGCCTCCTTAGAGTTGGTGGCCGACTCAGGGCTACAACATCCCCGTATGgaatcacgcatcctgttatcgtgccaaaaaagagccacgtgactgttctcctcatacgccagttccatcatgggaagcagcatcaccaagattacggcatgacccacaatgctatccgccaagctggatactatattatcaatggtcgttccgcagtttcccacgtcgttgccaagtgtgtaacgtgtcgtaggttacgtggccacgcccaagaccaaaagatggcggatctaccccctgagcgaacaacaccagctcctccattcacttacactggaatggatgtgtttggcccgttctacatcaaagaaggacgaaaagagttaaaaagatggggactaatatttacctgtctctcttctcgcgcgatacacttggaaaccctaaactcgatgacaacagactcgttcctgaatgcactcagacgctttatcagtcgcagaggaaagGTCGTAAGCGAAGGTGGGAGACCGAAGATTAGGGTGGAACACAAAGGAGAGACAAAAACTTTCTATGCAGAAGAGATTTCTTCTATGGTTCTGACGAAAATGAAAGAAACTGCTGAGGCTTATCTGGGAGAGAAGGTTACTGACGCTGTTGTGACTGTGCCAGCATATTTCAACGATTCTCAGAGGCAAGCAACCAAAGATGCCGGCATCATTGCTGGTCTTAATGTTCTTCGTATTATGAATGAACCCACCGCTGCGGCCATGGCTTATGGATTGAACAAGAAAAAACGCAGGGAGAGCAATGTGCTCATATTTGACTTGGGTGGTGGTACATTTGACGTTTCTGTTCTCACCATCGATGATGGCATCTTTGAAGTGAAGGCAACAAGAGGATATACACATCTTGGTGGGGAAGACTTTGACAATCGTATGGTTGACTATTTCAAGAAAGAATTCAAGAAAAAGCATAAAAAAGAAATTTCAGACAATAAACGGGCTATGTGCCGCCTGAGAACTGCGTGCGAGAAAGCAAAGAGGACCCTGTCTACGAGTGTCCAGGCCATGATTGAAATAGACTCCCTTTACGAAGGTATTGACTTCTATGAGCCAATCAGCCGTGCCAAGTTTGAGGAAATCAATGCTGATCTGTTCAGAGGCACCATTGAACCAGTTAATGAGGCAATTAGAGATTCCAAGTTGCACAAGACAGAAATCCATGAAGTGGTATTAGTTGGACGCTCTACTCGCATTCCTAAAATTCAGCAATTACTAAAAGAATTCTTCGGCGGTACAAAGGAGCTGAACAAGAGTATCAATCGCGATGAAGCTGTTGCCTATGGTGCTGCAGTACTGGCTGCCATTTTGAAGGGAGATAAAAGCGAAGCTGTCGCAGACTTCCTCTTTTTGGATGTGGCTCCCTTGACACTCGGTATTGAAACCAAAGGAGGCGTGATGAAGTCGCTCATCCAACGCAACAGACCAATTCCCACGAAGATGAGCCAGATGTTCACCACTTATTCAGACAACCAACCTGCTGTATTGATTCAAGTGTTTGAAGTACTGGCAAAGAAAACAAGATTGTCATCACCAATGACAAAGGTCGGTTATCCAGAGAAGATGGTTAAGGATGCGGAGAAGTACAAAGCAAAGGACGACCAGCAACGGGACAAGGTTCAAGCAAAGAACAGCTTAGAAAGCTATGCCTATAACATTATTGACAAGTGCAAAGAAGTGATTGAGTGGTTGAAGAAAACGGATGCAGCAGACAAGGAAGAATATGAAGCTAAAAAGAAAGAGCTAGAGAAACTTTTCAATCCCATCATCGCAAAACCTTATCAGAGTGCTGGAGGTGCCGGAGGAATGCCTGGTGGAATATCTGGAGGAGGAGACTTCACTGGAGCTCACGCTGGTGGACCGTAACCCGGAAGCGGGGAAACTTCTGAACCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2Q0Z1	Heat shock cognate 71 kDa protein OS=Equus caballus OX=9796 GN=HSPA8 PE=2 SV=1
P11142	Heat shock cognate 71 kDa protein OS=Homo sapiens OX=9606 GN=HSPA8 PE=1 SV=1
P63017	Heat shock cognate 71 kDa protein OS=Mus musculus OX=10090 GN=Hspa8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000441 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03283	HSPA1_6_8; heat shock 70kDa protein 1/6/8	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.