Gene detail

Detailed information of amic_s0094.g37.t1 in Acropora microphthalma

Genomic Location: sc0000094_pilon:607420...628800
NR annotation: XP_029196596.2, follistatin-A-like isoform X5 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0094.g37.t1

CGACCAAGTCTTGCCTCCCGCCATCGGTGCTAACTTGAACTGTGCGCGTCAGGGTTACCTAGCAGTTTGTCTGTTGCCAAAACCACGAAGAAACTTCGGAAACGTAAAGTCAATTTAATTGGTAAAAGAGACGGCATAGCACCAAAGAAAAAATAACACAGAATGGTTTCGAAAGGGATAAAGCCAGCTTTATTTTTCTTTGCTTATGTTGTTGTTGTTTACACAGTACAAGGTGCTTCAAGGCCCTTCTGCTTTGACAGAGCCAAAGGCAACATATGTCGCGGGCGCCCTATCAGGCCGAGTTCTAACAGAAACGGCACTGAAGACTGTTGTTTGGAGCCAAACGCAATGTACTACACAAACATAAGTTTGCGGATATTTCACTTTCTAGTTGGTGCTGACTGTTACCCATGCAATCCAACAGCAAACCCATGTGAAAGGAAAGTCTGTCCTTCAGGAAGGGTTTGCATTGACAAAGGGAATGGAAGAGCCAAATGCGCGTGCACAGGATGCCGAGACGCGATGAAGCGACCTGTTTGTGGAACCAATGGAAAAACATACCAACACGAGTGTGATCTAAAGAGAAAAGCATGCCGAGAGCGCAGACCCGACATTGAAGTTGCATATGATGGGAGCTGTAAAATCGGATGCGATCAAGTTGTTTGTCGCAAAAACCGTTCATGTATGGTTGACCACTACAAGACAGCCTATTGTGTACAATGCCCCGAGTGTTCTACCCATCATAACAAAAGTGGACCGGTATGTGGAGCTGACGGTTTACAATATGAAAGTAGCTGTCACCTCAGAAGGGAATCCTGCAGGCAGGGAAAAGCTATTGGTGTTGCTTACAGAGGCAGATGTATAGAAAATGCAACTTGCAGAAACATAAATTGTGGAACAGGTAATCAGCGTTTTTCCTTGTCCTGGATTAAAGAAAAACGAACCAAAAAGGAATGCGTTCAAGACGAAGCAGGGAGACCGCGGTGTGTCACGTGCTCATGCGAAAATATCGACCCGAAACAGAGAAGTGAAATCATATGTGGAACAGACAACAACACCTACTCAAACCTTTGCAAATTAAGAGAGCAAATGTGTAAAAAGAAGAAGTTCGTTGATGTGAAGAGCCTAAGCAGTTGCAAAGCTGACATCGCTGGATTTCCAAATGAACAACCCGCTGCACAGCCGACCCCTACGACGCAATGCGCCCAGGAGGATTGGAACATGTACTATATTCTATTGAGAGATTTTGTTGACATCTTAATAACCGACTTTGGGCTCAATGTTACGCACCCAAACTACGAGCAACTGCCAGACAACCAGAAAGTCGTTTTAGCAGAAAAAGTGAGGACCGTTCTATCACAGAAGTGGTCCAAGGTAACAGTGCATACAGCAAAATTGGATAATCGGTGAATTTTCTTGATTATCAACAAGTTAAGAAAAAACTGCTTCTCTTTTTCTTATACACAATGCATAAAGTGAACAATAACTAAACGGACCCTGAAAGTACTTGTGATGAGATGAGATAGTATCCCGATTTTACGGAGCATCGTGCAAATCGTACAGTTCCCGGCAGCGCAGAATTAATATTAAATCAATTTTGATGGTGACGCAAGGGCAAGATGGGAGCCATTTCTCGCGCCATTATAATCTCCACCACGTTCCCAAGCTTCAGTGAAAAGACCCTGGGAAGTAGGTTGAAATATCGCCCGTTTTTCTTTCTGGTTATTAACTTACAAGTATGAAGGAAAAAATAAGGGCATCGTGATGGGCTCCTGATAAAGGCTATACTCCAGCCACAGTTGAGTATACCATTCTCAGTCCCTTTCACGAGGCGTTACTTGCATACATTGCAGGATTCACATATTTTACGTGCTAAGGATACTGTGATTCAGTGGGTAAGGCATGGGGGTCGCGTGATCCAATGGCTTGGAGCTCAAATCCCGGGCCATTATTGGCTGAAATCGTCTTCAGCGGACCCCATTCCCCCATTAAATCTACCACGCttttcggacagccacctggacccagttgttcaaacaatggatagcgctgtccaccggataagtcactatccagcgaacacgagaaaaaccaattgagttatccagtggatagtgatttattcagtggatagcgctatccagcgtttgaacaactggagcctggttactaaaTGGCCGTTGAGATTCGTCCATGGCGATGCTTAGAATAGCTCTTGCTTTAGAAAGTCACTTTATTAGTGACGATAAAGGGCATTTGATCATGGAAAATACTGTAACACAATGTATAAATGGTATGCATATGTAGGAATGGGGAAAACAAAACCTTAACTTTGATTGCACCCTTAAACGCCAGTAGTTAGTCAGTATGAACCGAAATTCCTGCCTTAGGCCTAGGGAAGTGGGGCTCATTTAATTTGTTATGAATGCAACGTGTAATGTAAACTATACTCATTTATGAGCATGAGACATGTAAGCCGGGCAAAAGAGCATTTACTTGCATAATACATGGAATTTACTTTGCCTTAAAGGTCTGCCACTGCAATCACAACGGCCGCTCCGCCCGAATGCCGAGGGCTGACGCGTCCAAACGCTGAGAGGCGCGGTTGTTTTCGATCATGCAGCGAAATCTAGCCCTAGCTTGCATGTTTATGTGGTCACCATAGAAAGAAAAAAATTAAGAGACGTCGGTAATCTTTGAATACTGTCTCAACTATGTATACCCAGGAGTTCTTAATAAAAAAGGGAAATGTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62356	Follistatin-related protein 1 OS=Mus musculus OX=10090 GN=Fstl1 PE=1 SV=2
Q5R9Y1	Follistatin-related protein 1 OS=Pongo abelii OX=9601 GN=FSTL1 PE=2 SV=2
Q62632	Follistatin-related protein 1 OS=Rattus norvegicus OX=10116 GN=Fstl1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003706 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003645 all species →	Domain	Follistatin-like, N-terminal	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13866 all species →	SPARC OSTEONECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005518 all species →	Molecular Function	collagen binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0050840 all species →	Molecular Function	extracellular matrix binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04661	FST; follistatin	-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.