Gene detail

Detailed information of amic_s0094.g44.t1 in Acropora microphthalma

Genomic Location: sc0000094_pilon:728877...732539
NR annotation: XP_015754018.1, PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0094.g44.t1

CTACGGCCGTTTTGTAGTTCGGGAAAGAGGGAATTTAGGATGAATGCTCCAGAATCATTTGAACCCTTTCTCTTGTTGGGTGGAGAGAAAAAAATCACGATAACAAAGGACACGAAAGTTCCAAATGCAGCCCACTTCGTGGTGAACAAGGAAGACCACACACTTGGAAATCTTCTCAGGGCGCAACTGTTGCGTGATCCACAAGTTTTATTTGCTGGCTATAAAGTTCCTCATCCCCTGGAACACAAATTTGTTCTTCGTGTGCAGACCACCTCTGACTACAGCCCACAAGAGGCATTTACAAATGCTATAACAGATTTAATAAGTGAGGTGTCACTTCTAGAGGAAAGATTCAAGGCTTCTATCAGGGACAAGCAAGAGGGCTTGGAGTAATCAAGAGAGAATTTTTCATGTTGACCTGCTTCTCCACATCCCAAGGGTTATGAAGACATTATTTATGAATACCAAAAGTTCTATCAAGTCACCTTTGGATGGAAGGATTGTTGTAAATATTTGTTACTGTGAACAGCATTTCCTTTCCTTAATTCATACTTAAAGTATGAATACCCGGCAAAGGAAGGTTGGCAACCTACAATACTCAAAAAATTTTCTTGAGCAATTAAATAGGTACTTAGCATGGACTTCCAGCTTGGCATAAATTTGTGACTTACCCCACAAATTGTGGGAAGATGACAACCTCCAGTTTAAAACAGCTAACTATAAAGTTTAATTATCACTTGAAGTAGGAATTTCAATAAATTAATAATTATTAACAGTTATGTTTTCAGGGTAGGTGAAAAGTACACCCCAGCCAGCTCTTGTAACTTAGAAATAGTGCCCAGTCCCCCAAACCTTCTCCTCGTTAGATTCCTGCTGCATATTTCACTGAAGAAGTTTCACAGTGGTTAAGTTCTTGCAATCATTTTGTAATTACGTCTTAAAAATGATTACTATAAATTTTTAATGTAAATTGCAACCTCCAGGAAGTAAACTAGGTGAAGAGACAACTAAAGCATAGCAAGAATTGAATGTCAACATGTTTATTTGTTTTAAGTTTATAAATTTACAGCATTAACTAGTATTCAGCTGACAATGGTATTTTTTATTTTCACCCCTACTCAACATTTCATAGTACCATAGCCTTTTATATTTTCAGATGACATGAACAAACTTATTTTAAGAATGTTCCATTGATTTCTTTTTCCTGCTGTTGTTCAATTAATTTACAATCTCTTGTAATACAGTAATAACAACTGTTTCCTGTAAGTCTTTATAAAACACAACGTGTCTTCCAAGACTTATTTAAGAACTCTTATGAACGCGCAACCGACTTTATATTCTTTATGTAGATGACTTGCTCCAAAATTCATCACTTGAAACCATGATTACTTGATTAAAATCCTGTGACCAAATCTAATAAAAGGAAGGCCAAACAATTATTTTAAAAATCGTAAGGTTAGGGTTAATGACTCCAAAACAACACCTACCCATCGGACTAAATTTGGAAAACACTCACTAAGATTCAATACCAACGACATATTGACAATATGGACGTAATCCCTGGACTATTTTCTGCATAATTACCTGCCCTGGTTACTTCAACCAAGGTTAGGAATGCTAGATAACCTTTTCTTTCCTTATTTATGGGGTGGGGTGGTGGGTGGTGTTGGAGTTTGGGAAGGGAGACCTGACCAACTCTGATGAGCTACCTGAAGATTACAGACAAATTAATCTTAAGGAGTAATGTTCCTTTTCAGAAAATTTTCCTCTGTGTCAAAATAACAGCGAAAGTGGGAGCACATGGTTATAATCACTTACATGACTATCCAAGTATAACACTGGTGCAGTGCATCTCTGCTGCATAGCTTGTTGTTGGTGAACAGCACGTGCCAGTGTCTGACAATCACAACCAATCAGATAATTCATAGTCAAGGATCAACTACAAAGCCAAACTTGAAAATTCAGGGAATGCAAAATAGAACTCTTAAGGCTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32P79	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1
P52435	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1
O08740	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007802 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13656 all species →	RNA_pol_L_2	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009025 all species →	Domain	DNA-directed RNA polymerase, RBP11-like dimerisation domain	Interproscan
IPR036603 all species →	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR008193 all species →	Conserved_site	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	Interproscan
IPR022905 all species →	Family	DNA-directed RNA polymerase subunit Rpo11-like	Interproscan
IPR037685 all species →	Family	RNA polymerase RBP11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13946 all species →	DNA-DIRECTED RNA POLYMERASE I,II,III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03008	RPB11, POLR2J; DNA-directed RNA polymerase II subunit RPB11	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.