Gene detail

Detailed information of amic_s0094.g63.t1 in Acropora microphthalma

Genomic Location: sc0000094_pilon:988082...1013991
NR annotation: XP_029196519.2, protein SMG5-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0094.g63.t1

ATGTCTCAGCCGAGGATGAAGAAAGCTTTGGTGGCAGAGGATAATGCAAATGCTCAAGGGAAAGAAGGAAGCAGGCTTAACAGGTCTTCTATGCAGCTTGCTAACAGGATTGATATTCAGCTGAGGTCTGTTGTTGAGTTCCAAGAACTTTTTCACCCAGATGCTATTGCGCTCCGACAGAAGTTGAGAGTTCAGTGTGAGAGCCTGATTCTGAAACACCCAAAGGAATATGGTAGAAGAGCTGAGGAGCGTCTGTGGAGAAAAGCCTTTTATGATGTCATCCAGAAGTTAAGAAATCACAGAAAGCTCCTGGAGGATGGCTGTGATGCCCTTGATGGTGTTCTTCGAATGCATTTGTCTTCTGCAGCTGGATATTATTATCATCTATTAACACACCTGCAACGGTGTTACCACCTTGGATTAGAAAATCTGCTTTCTTGGGGAATTTCACCCCATCAAGCTGTTGATGGTGACCCTGAGACAATCTCTTGGGCAGTAAAAGCATGTCAGCGTTGTCTTATTTACCTAGGAGACATTGCACGTTATCAGTCTGATCTGGAAGGTGCAGATGCTGTGAAACTTGCTGAAAGATTTTATTCAGAAGCAGCAATGATCAACCCAGACATTGGGATGCCTCAGAACCAGCTTGGCACATTGGCAGGAACAAGATCTTATGGCTGTGAAGGAGCTTATTTTTACTTGAGATGTCTTTTTTCAAAGGAGGTATTTGAAGGTGCTGAAGGAAACTTGCTTAGAATCTTTGAAAAGAACAGATCTCTTGTGCACAGGATAAAGGAGCTGCCACTGGATGAACCAAGGCCCAATGAAAGAATTAAGCGATTTCTTGTGTATTTCTTGTACCTCCAAGATGTCCTATTCAAACATGAAAACTCACCTGATATCAGTACTGAGGATACTGGCCATTTGTGTCAATCTGTGTTGCAAGACTTCAACAGTGCACTATCAGTAGACGTATCTCCGTCAGATACGCAATCACAAGTTCTGCAGAATGGCTTCACATCTCAGGAGAACGGACACCAACACCCTGACACCATAAATGGAAGTGATGGTGTCATTAGTGGCTCACTTATGGTGAAGCTCGTTGTCATGACAATTGCAACTGTCACAAGGTTGCAGTCCAAAGGTGCCCAAGAATACTCTATGGCGATTGCCTTTACCTTATCGTTTCTATCTTTTCTTATTCAAAAGTGCATTTCTTCTTTTGAGAACTTTTCTGCAAATGAACATTTGCACCCCGAGAAGCCAATTACCAATGGAATGCAAAATGATTCCCAAGTTCTGAACGGTTCGAGCGCAGCAATGTCGAAAAACGAGAGTTCCTTCCCTTTATTCAATGCAAATAGCGATTCCAGCGAAGCGAGGAAACTAAAACGAACCCTGCAGCATCGGAGACGAAGGCGCCGACGAAAGAATGTAGATTACAGCTTCGACAGCTACAGTGGAAGTGGCAGCGACTCCGAGGAGTCTGGGGAAGAGGGCTCGGATGACAGTGATTTAAGTGAAGGGGGAGGGGAGGGTGAAATATTTGATAGAATGAGTGACGAAAGCGATGACGTTTACATTGAAAGCGAATCAGATGGCGAGAATGGCAACACTGGCTCCTTTGTTAACACCGTGTCTTCTGCAAAGCAACCTGAAAAGAATGTCATGCCGAAACCAGTCGATAACTCAGTTAGTCCACATACAGTGGGTGGCAAGCCAGGATTAAAATCTGGTATTTTCAAACAGAATGGGATTTCAGTTGGAAAGATCCTGAGAGCCGATCTGATTAGTGATGTCAGCGACACAGAAACTGAGTCGTCCGTGGCGTCAAGAACTGAGCTGTTGCGTGACTGTGCGGAGTCTAACATATTGAAGGCTGTCACGGGTCAGAAGTTGTTACCTGCCATTAAAGTCATGACTGACTGGCTCCGTTTGAATGGTGAACTTCTCTTGACTTGCGTCGAGAGCTTGGGTACCCTGTTGTCCAGATTGGCCGTGCTTCTAAACATGTTTCCCACAGCAGAGCAGATGATATCAGCAGTTCCCGTGCCTAGACGTCCAACATGGCAAAGCGTGCTTGACGAGACACTCGACAAGAATTGGGTTCAGTCACGTGGCCTTCCAGAGGATATGTCATTGTTGGGATTTACACCACTAAACACAATACACAGCAGGCTCGACAAAAAGTGGAGTAGGCTTACGCGAGATTGTCATTACCTTGAGGCTGCCGTTCGAGTTCAGTGCTTAAGAAGTTTTGGTATGAAGCTTGCGTCAGTCGAGGAATTGAATTCATTCAATTGGGACCGAAAAGCACTGCGGTTTATCGGACCTCAACAAATGACAGAACCAGGAAAACAACAAGCAACAGAAAAACACCATAGAACAACACCAGTGCATGGAAATCACGACCGTCGCTCACGAGTAATGAAAGCTATGGCTCAGCAGTTGTTGCAGAGTGAAGTGGCAGCACTTGAAAGCAATCTTAAAACAGCGCCATCAAGCTCGAGCACAGCATACGTTGTACCAGATGCCACTGCACTGTGCACTCAGCTGCATCTTCTGAGGAGACTGGTTACTACAGAGAGGATGGTTATCATCATTCCAATTCAAGTGATATCGGCGCTTGATGAGCTGAAGAAATACGACAGTGGGGCAAGAGAAGCTACCAAGTATTTAGAGCAAGAATTCAAGAGAGGAAATAGATGGATCAGAGCTCAGAAAGAAGACGAGACGCTTGATTCAGGCAAAAGACGAGGTCGGTACGAGGACGTAGCTGTGTGGCGTTTTGGTCAGATCGTGAACTGTTGCCAATACTTCGTGAAGGAGACTGGGAGAGGTCTTGTCACCTTACTGACGGGAGAGACTTCGTACGAGCTCCCCAAAAAGGGCAAGAAAAAGGGCGTGACCTCCAATGGAACACAGGCCACCCCAGAAACGGTAGAACTTGCTCGAAGCTGCGGCGTCGGTGTGGAGTCGCTTCGTGCGTTCTGCTCGCGTTTTTTTCAACAGTCAAAGTCGGTTACTTGA

Transcript

amic_s0094.g63.t1

AAGATGTCGTCGATTGTGAGTAGGACAGATCTGTATTTTCATGAAACAAGTGTCAAAAAGTTGGTTCATGTTACTCCCACAAAGGGATAGTACCAATGAATGTCTCAGCCGAGGATGAAGAAAGCTTTGGTGGCAGAGGATAATGCAAATGCTCAAGGGAAAGAAGGAAGCAGGCTTAACAGGTCTTCTATGCAGCTTGCTAACAGGATTGATATTCAGCTGAGGTCTGTTGTTGAGTTCCAAGAACTTTTTCACCCAGATGCTATTGCGCTCCGACAGAAGTTGAGAGTTCAGTGTGAGAGCCTGATTCTGAAACACCCAAAGGAATATGGTAGAAGAGCTGAGGAGCGTCTGTGGAGAAAAGCCTTTTATGATGTCATCCAGAAGTTAAGAAATCACAGAAAGCTCCTGGAGGATGGCTGTGATGCCCTTGATGGTGTTCTTCGAATGCATTTGTCTTCTGCAGCTGGATATTATTATCATCTATTAACACACCTGCAACGGTGTTACCACCTTGGATTAGAAAATCTGCTTTCTTGGGGAATTTCACCCCATCAAGCTGTTGATGGTGACCCTGAGACAATCTCTTGGGCAGTAAAAGCATGTCAGCGTTGTCTTATTTACCTAGGAGACATTGCACGTTATCAGTCTGATCTGGAAGGTGCAGATGCTGTGAAACTTGCTGAAAGATTTTATTCAGAAGCAGCAATGATCAACCCAGACATTGGGATGCCTCAGAACCAGCTTGGCACATTGGCAGGAACAAGATCTTATGGCTGTGAAGGAGCTTATTTTTACTTGAGATGTCTTTTTTCAAAGGAGGTATTTGAAGGTGCTGAAGGAAACTTGCTTAGAATCTTTGAAAAGAACAGATCTCTTGTGCACAGGATAAAGGAGCTGCCACTGGATGAACCAAGGCCCAATGAAAGAATTAAGCGATTTCTTGTGTATTTCTTGTACCTCCAAGATGTCCTATTCAAACATGAAAACTCACCTGATATCAGTACTGAGGATACTGGCCATTTGTGTCAATCTGTGTTGCAAGACTTCAACAGTGCACTATCAGTAGACGTATCTCCGTCAGATACGCAATCACAAGTTCTGCAGAATGGCTTCACATCTCAGGAGAACGGACACCAACACCCTGACACCATAAATGGAAGTGATGGTGTCATTAGTGGCTCACTTATGGTGAAGCTCGTTGTCATGACAATTGCAACTGTCACAAGGTTGCAGTCCAAAGGTGCCCAAGAATACTCTATGGCGATTGCCTTTACCTTATCGTTTCTATCTTTTCTTATTCAAAAGTGCATTTCTTCTTTTGAGAACTTTTCTGCAAATGAACATTTGCACCCCGAGAAGCCAATTACCAATGGAATGCAAAATGATTCCCAAGTTCTGAACGGTTCGAGCGCAGCAATGTCGAAAAACGAGAGTTCCTTCCCTTTATTCAATGCAAATAGCGATTCCAGCGAAGCGAGGAAACTAAAACGAACCCTGCAGCATCGGAGACGAAGGCGCCGACGAAAGAATGTAGATTACAGCTTCGACAGCTACAGTGGAAGTGGCAGCGACTCCGAGGAGTCTGGGGAAGAGGGCTCGGATGACAGTGATTTAAGTGAAGGGGGAGGGGAGGGTGAAATATTTGATAGAATGAGTGACGAAAGCGATGACGTTTACATTGAAAGCGAATCAGATGGCGAGAATGGCAACACTGGCTCCTTTGTTAACACCGTGTCTTCTGCAAAGCAACCTGAAAAGAATGTCATGCCGAAACCAGTCGATAACTCAGTTAGTCCACATACAGTGGGTGGCAAGCCAGGATTAAAATCTGGTATTTTCAAACAGAATGGGATTTCAGTTGGAAAGATCCTGAGAGCCGATCTGATTAGTGATGTCAGCGACACAGAAACTGAGTCGTCCGTGGCGTCAAGAACTGAGCTGTTGCGTGACTGTGCGGAGTCTAACATATTGAAGGCTGTCACGGGTCAGAAGTTGTTACCTGCCATTAAAGTCATGACTGACTGGCTCCGTTTGAATGGTGAACTTCTCTTGACTTGCGTCGAGAGCTTGGGTACCCTGTTGTCCAGATTGGCCGTGCTTCTAAACATGTTTCCCACAGCAGAGCAGATGATATCAGCAGTTCCCGTGCCTAGACGTCCAACATGGCAAAGCGTGCTTGACGAGACACTCGACAAGAATTGGGTTCAGTCACGTGGCCTTCCAGAGGATATGTCATTGTTGGGATTTACACCACTAAACACAATACACAGCAGGCTCGACAAAAAGTGGAGTAGGCTTACGCGAGATTGTCATTACCTTGAGGCTGCCGTTCGAGTTCAGTGCTTAAGAAGTTTTGGTATGAAGCTTGCGTCAGTCGAGGAATTGAATTCATTCAATTGGGACCGAAAAGCACTGCGGTTTATCGGACCTCAACAAATGACAGAACCAGGAAAACAACAAGCAACAGAAAAACACCATAGAACAACACCAGTGCATGGAAATCACGACCGTCGCTCACGAGTAATGAAAGCTATGGCTCAGCAGTTGTTGCAGAGTGAAGTGGCAGCACTTGAAAGCAATCTTAAAACAGCGCCATCAAGCTCGAGCACAGCATACGTTGTACCAGATGCCACTGCACTGTGCACTCAGCTGCATCTTCTGAGGAGACTGGTTACTACAGAGAGGATGGTTATCATCATTCCAATTCAAGTGATATCGGCGCTTGATGAGCTGAAGAAATACGACAGTGGGGCAAGAGAAGCTACCAAGTATTTAGAGCAAGAATTCAAGAGAGGAAATAGATGGATCAGAGCTCAGAAAGAAGACGAGACGCTTGATTCAGGCAAAAGACGAGGTCGGTACGAGGACGTAGCTGTGTGGCGTTTTGGTCAGATCGTGAACTGTTGCCAATACTTCGTGAAGGAGACTGGGAGAGGTCTTGTCACCTTACTGACGGGAGAGACTTCGTACGAGCTCCCCAAAAAGGGCAAGAAAAAGGGCGTGACCTCCAATGGAACACAGGCCACCCCAGAAACGGTAGAACTTGCTCGAAGCTGCGGCGTCGGTGTGGAGTCGCTTCGTGCGTTCTGCTCGCGTTTTTTTCAACAGTCAAAGTCGGTTACTTGAGGCTGTGAGGAAGAGGTCCAGATGAACTGGAGATGATCAAGATATTAAGGGTATTGTACCCTGAAAAAGAGGCTGTGAACACCAGCGGTACCAACTAGACCTGGTACAGTCTAGATAGAGGAATAACCACAGGGTTCCCGATTGACCTCGAGATTTAAAGTAACAACCGTAAAAGAACTTGCGTGTGTCGTAACTTGTTGAAATCGGTATCACCTTTGCTGTATAGGCTCCTGGGTTCTGTAGCAAGATAAAGCTCGATTGATTTGTGTTGAATTTCCATCTTTGTGCCCTAATTTCTTGTTGGATCAGACTGGCTATTGCTAGCAGCTGAATCGATGATACTGATCCCAGTGCTTCCTCAACCACTGCTATCAACCTTGCGTGAGAAACACTTAATCTAGGGCATTAATAGCGACCTTTTATTTACGTAACTCTTAGCTCTTGTAATGATCCTACCTTTGGTCTGGTATCAGGATTTTTGATTTTGCAGGCCCGTTCTCCCCTCGCACCTGCACCCGCAccccccccccccccccccccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATGGCATTCCACCTGGGTTCCCAAATTCAAAAGCAGTTGAAATGTTTATCGCATGCATTGCTTAAGTTGAAGATGATGACTTATTAAAGCTTGGTTAATCCGTTCTGTGGCTTTGTGTGCCGTTGTATTTACTTCTTATCACCCAAATTTAGAAATTCATGAAACTTATCTCCCTTTCCCTTCCTCCCTTGCCTAATCCTTCGGTTTCGCAGGCTTCAGTCTACATGATTCACCTCTACTCCCTCAACATGTTCTTTTTTTCCTCTCTTGCTAATCAACGTTTTGCCGCGTGGAGGTTAACTGGTTTGTGCAAATCACGGGAAATGTGATCGCTTTCACTATTAAAAAGGTTCTTGTTCTACCAAGTGCTTGGCTGTTTCGGTTTAATACCAGTAGCGCTTATTCTCGCACAAGATGCGAAGATTCATTATCGCAGTATCAACAGGAAAATATTGCTAAGCAGCTGTATTTTCGAAACATTTCCATTTTATCGTGCATGAATTATTGACGCAGCTTCAGGATTAATATGTTCTGGCTGACTGCCTTCATTCACCGATGATGGATTTGTGGTTTTGTGGCCTCAATTCGTGGCGTAACCCAACACAACAGGATTCTGTTCTGTTTTTGACCGCGTTCGCGACTTCGAAATAAGTGCGTTCCACTTGGGTAACCGCACATTGTTCAGTGACCAATGCGGTTCCCATCCTTTCATCACGTTTTCTTATTTCAATATTTGGGGAGCAGCTTGACCAAATATTCATTTAAAATTACAAGCCGCGTTTTGTTTTGTTGCGGCATAGAGTCGTCAATGTTGCGTTTGGAGTTCAACTTTTCTGGAACTAGCGGGATTCTTTGTTCCTCGAAGAACATTTTTGTCACCCAGTGTGTAGACAAAGTCGTCGCGGCTAGCTCATGGATGGATCAATTTTACAGAATAATTATTTCCGTCTGTAGTGTTTTTTATTATTTCGCGTTCTTGGAAACCTTTCCTCAGGTCGTTAAAAACAAGTAGTGACTTTTGCGAACATCTGCAAGCAATACCGTGTATCATGCTAGGTTGATAAATGGTGTCATTGTATTTTTCGGAAGCATCTATTTAAATAGGTAAAATGAAATGCTAAAAATGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPR3	Nonsense-mediated mRNA decay factor SMG5 OS=Homo sapiens OX=9606 GN=SMG5 PE=1 SV=3
Q6ZPY2	Nonsense-mediated mRNA decay factor SMG5 OS=Mus musculus OX=10090 GN=Smg5 PE=1 SV=2
F1R7R1	Nonsense-mediated mRNA decay factor SMG5 OS=Danio rerio OX=7955 GN=smg5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006483 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13638 all species →	PIN_4	PIN domain	Domain	Interproscan
PF10374 all species →	EST1	Telomerase activating protein Est1	Repeat	Interproscan
PF10373 all species →	EST1_DNA_bind	Est1 DNA/RNA binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045153 all species →	Family	Est1/Ebs1-like	Interproscan
IPR002716 all species →	Domain	PIN domain	Interproscan
IPR019458 all species →	Domain	Telomerase activating protein Est1-like, N-terminal	Interproscan
IPR018834 all species →	Domain	DNA/RNA-binding domain, Est1-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15696 all species →	SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0005697 all species →	Cellular Component	telomerase holoenzyme complex	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0070034 all species →	Molecular Function	telomerase RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11125	SMG5, EST1B; protein SMG5	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.