Gene detail

Detailed information of amic_s0094.g75.t2 in Acropora microphthalma

Genomic Location: sc0000094_pilon:1254713...1263501
NR annotation: XP_029206978.2, uncharacterized protein LOC114970672 isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0094.g75.t2

ATGGGATCATCATTTGCAACATCTGTTTTATGGTTTGCACTAGTAAGCTTCTTTTGGACTGCTGACAGCTCTCCAGAAATACAAGGTGTATTTCAGAACTTGGGAAACAAGAAAACACAACGATTTCCAGTTTACGAAGCAGTCAAAGGTTTTGATGTCTTCTTGAGGTTCTCCGCCTCAAAATGCACAGGACAACTTGTGGAGATAACTAGCAGAGATAACAAGGAATTCTTGAGAATTACGCTCCTTGAAGTTGGTCCCATTCGTTTCTCATTCAATACCTACCGTGGTAGAGGACAGTTGGAATTTGGTATGCCAAAGAAAGGCAGCTTCTGTGACGGAAAAAGGCATGTTTTAGCGTTAAACATATTTCGAGGCGTCGTTTTTTATTACGTGGATCGGTCGCCACCGGCGAGATTCTACGTCTCACGATTAGCGGCACCTTTTTCGAGCCCGGACAAGATTGTTCTGGGTAGAGGCCTCGAGGGATGCGTGTCTGGTGCTACTGTGATCAACCGATTCAGCAAGACAGAAGAGCACAGAATTATGTCATCCGGTGAATGTGCTCTCAGAGCAGAAACTAGTTTGCGACCCACCACTGTTCCGACTACCTCAAAGCCAGACTTGACCTCTATCGTGATGGCAAGAAAGGTAGCAGCTTCCCAGAAGTACTCGCCCAATCCAAAATGCGAACCATTGCCATTCGACGCTTGTAAAGGTCTTGGCTACAGTCATACCCAGTTTCCGAATATACTCAAGCACAAGTCATCTTACAACGCCGAAACTGAACTAAACACGCTTCTATCAAAGCTACAACCCAAGTGCTCTCTTAATCTCATTCCATTTTTGTGTCATTTGTTCTTTCCTCCATGTCCTCTGCCCCAGATCCCTGTTCCACCTTGTCAGTCCCTCTGTAAGAGTGTGGTAGAGGACTGTTCTCTGCTTGGGTTCAAGGACACATGGTCTCGACATGTGAGCTGTGAGCATTTCCCACGGGTCGATGATAAGGAGGAGTGTTTCTTGGGCGACAAGAAAGTCGCTGCGAGGAGAACCACCGTGATAAAGGGGTCGACTGGGAAGAATCATAACCACACGGAAACTACCTCGTTACTGGCGTTAAAGAGACTACAAGGAAAACACGCTCGATTTTCGAAACCAGTGCTCCCGATGACAGCGTCGGTTAACAAGATAAAAACCAAAGGTAAAGGAATCGAAAAAACTCCTTCAAAAGAAGTAAAAGGCACCTGGACAAAATCTGCTTCTTCATTGAAAACAATACCTCCCTCGACAATTTCTGCCGAAACAAGAATGAATGAGTACCTTACAAATGCCACACAGTCCCCGGAAAAGGCACAAAGCTACTCACAGAAAGCTTCTTCTGTCGCAAAACCAGTTGTCTCCTCAAAAGTTTCTGCTGTGACAACAATAAACACAACACAGTCTCCGCAAAAGGCACAAAGCTACTCACAGAAAGCCGCTTCTGTCACAAAACCAGTTCTCACATCAAAAGTTTCAGCTGTGACACCAATAAATGATGCAACGAGTCTCCCGAACCTGGAAAAGGAGTACTCGACGAAACACGTACCTTTGTCAGAATCAGTGCAGCACCCAACAGCTTCAACAGACACAACAATGAACGAGCAACAAAGAAATGAATCGAATCATAATCATGGCTCAACTTCAAAACCACTGAAACCATCAACGATTCAGATTAACAGCACAAGAACAACAGGGCAACCAGGAACTGAATCAGTGAACGAAAATGTCACCACAACGGGATTCCGACCCGAAAACATGACGACCCATTCGCGCTCATTGTTTGAAGCAGGGAAATGCGGCAAATTGCTGGGGTCCTCAGAGGGACAACTCACATCCCCTGGTTACCCTGGTGAATATCCCCCAAGCACAACATGTAAATGGCTGATTTCATTATCCCAAGATTATCAAGAGATCATATTTACATTCCACAGTGTGTTCCTCGAGGAGGATCGAAATTGCGTGTACGATTACATAGCTGTCTATGACGTGTTGGAGAACCAAGTTGGTGAGCGATATTGCGGTTCCATCACGAGACCCATCAATAAACATGTCAGAGGCAATGTTGCGGTGGTGATCTTCCGCTCAGACTCCACGAACAGTAAAAAAGGATTCAGTCTTTCGTACAAAGCAAGCAAAAGCCGCACTTCACCCGAAATAAACACGTAA

Transcript

amic_s0094.g75.t2

CACTCACGTTTAATTTGACCTGTCATGGGAAGCATAGCATTCTTTTCTTCGGTGAGGAAGTACATTTAATCGACGGCAGTATTGTGGCAAAGGCACGTAACACCTTTTCACGGATATGGGATCATCATTTGCAACATCTGTTTTATGGTTTGCACTAGTAAGCTTCTTTTGGACTGCTGACAGCTCTCCAGAAATACAAGGTGTATTTCAGAACTTGGGAAACAAGAAAACACAACGATTTCCAGTTTACGAAGCAGTCAAAGGTTTTGATGTCTTCTTGAGGTTCTCCGCCTCAAAATGCACAGGACAACTTGTGGAGATAACTAGCAGAGATAACAAGGAATTCTTGAGAATTACGCTCCTTGAAGTTGGTCCCATTCGTTTCTCATTCAATACCTACCGTGGTAGAGGACAGTTGGAATTTGGTATGCCAAAGAAAGGCAGCTTCTGTGACGGAAAAAGGCATGTTTTAGCGTTAAACATATTTCGAGGCGTCGTTTTTTATTACGTGGATCGGTCGCCACCGGCGAGATTCTACGTCTCACGATTAGCGGCACCTTTTTCGAGCCCGGACAAGATTGTTCTGGGTAGAGGCCTCGAGGGATGCGTGTCTGGTGCTACTGTGATCAACCGATTCAGCAAGACAGAAGAGCACAGAATTATGTCATCCGGTGAATGTGCTCTCAGAGCAGAAACTAGTTTGCGACCCACCACTGTTCCGACTACCTCAAAGCCAGACTTGACCTCTATCGTGATGGCAAGAAAGGTAGCAGCTTCCCAGAAGTACTCGCCCAATCCAAAATGCGAACCATTGCCATTCGACGCTTGTAAAGGTCTTGGCTACAGTCATACCCAGTTTCCGAATATACTCAAGCACAAGTCATCTTACAACGCCGAAACTGAACTAAACACGCTTCTATCAAAGCTACAACCCAAGTGCTCTCTTAATCTCATTCCATTTTTGTGTCATTTGTTCTTTCCTCCATGTCCTCTGCCCCAGATCCCTGTTCCACCTTGTCAGTCCCTCTGTAAGAGTGTGGTAGAGGACTGTTCTCTGCTTGGGTTCAAGGACACATGGTCTCGACATGTGAGCTGTGAGCATTTCCCACGGGTCGATGATAAGGAGGAGTGTTTCTTGGGCGACAAGAAAGTCGCTGCGAGGAGAACCACCGTGATAAAGGGGTCGACTGGGAAGAATCATAACCACACGGAAACTACCTCGTTACTGGCGTTAAAGAGACTACAAGGAAAACACGCTCGATTTTCGAAACCAGTGCTCCCGATGACAGCGTCGGTTAACAAGATAAAAACCAAAGGTAAAGGAATCGAAAAAACTCCTTCAAAAGAAGTAAAAGGCACCTGGACAAAATCTGCTTCTTCATTGAAAACAATACCTCCCTCGACAATTTCTGCCGAAACAAGAATGAATGAGTACCTTACAAATGCCACACAGTCCCCGGAAAAGGCACAAAGCTACTCACAGAAAGCTTCTTCTGTCGCAAAACCAGTTGTCTCCTCAAAAGTTTCTGCTGTGACAACAATAAACACAACACAGTCTCCGCAAAAGGCACAAAGCTACTCACAGAAAGCCGCTTCTGTCACAAAACCAGTTCTCACATCAAAAGTTTCAGCTGTGACACCAATAAATGATGCAACGAGTCTCCCGAACCTGGAAAAGGAGTACTCGACGAAACACGTACCTTTGTCAGAATCAGTGCAGCACCCAACAGCTTCAACAGACACAACAATGAACGAGCAACAAAGAAATGAATCGAATCATAATCATGGCTCAACTTCAAAACCACTGAAACCATCAACGATTCAGATTAACAGCACAAGAACAACAGGGCAACCAGGAACTGAATCAGTGAACGAAAATGTCACCACAACGGGATTCCGACCCGAAAACATGACGACCCATTCGCGCTCATTGTTTGAAGCAGGGAAATGCGGCAAATTGCTGGGGTCCTCAGAGGGACAACTCACATCCCCTGGTTACCCTGGTGAATATCCCCCAAGCACAACATGTAAATGGCTGATTTCATTATCCCAAGATTATCAAGAGATCATATTTACATTCCACAGTGTGTTCCTCGAGGAGGATCGAAATTGCGTGTACGATTACATAGCTGTCTATGACGTGTTGGAGAACCAAGTTGGTGAGCGATATTGCGGTTCCATCACGAGACCCATCAATAAACATGTCAGAGGCAATGTTGCGGTGGTGATCTTCCGCTCAGACTCCACGAACAGTAAAAAAGGATTCAGTCTTTCGTACAAAGCAAGCAAAAGCCGCACTTCACCCGAAATAAACACGTAAATTCTGACTGAGTGGGTGGACAAGTCTTGTTTGACCTTTTCTCAAAAAGGACACTCAAATGAACATTATTTCGTAGAAAGCGCGCGGAACAGTTTATCAGTATACACGGCGCACTTTCTAAATATATCGAATCCCTTGCAGTTGAACTTTCAATTATTGTTACCTCTTTGTGTCAAGACTCATAATACGGTAAGATCTGTTAAAAAAAAAGTTGGAAACCAAAGATAGTATGTCAATTAATAAAACTTTTTTTTTTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70244	Cubilin OS=Rattus norvegicus OX=10116 GN=Cubn PE=1 SV=2
Q86UP6	CUB and zona pellucida-like domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CUZD1 PE=1 SV=1
Q9JLB4	Cubilin OS=Mus musculus OX=10090 GN=Cubn PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002674 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567 all species →	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0094.g75.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.