Gene detail

Detailed information of amic_s0095.g27.t1 in Acropora microphthalma

Genomic Location: sc0000095_pilon:521166...540470
NR annotation: XP_029202750.1, inactive rhomboid protein 1-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0095.g27.t1

ATGGCTAGTGCTTACCAACCTACCACAATTCAGGATGAAGATATAGACGACAATGAACGAACTGCTTTCTGTAACCCGTTCCATAGTCGAAGACATCACGATTTCCACACAGCTAAACAAGATGACCCCATGACAGGAGAAGAGAATGAAGGAGATCGGCACGAAAGGGTGAATCAATGGCTATTTACCCGTTGTGTCTCGCGACAGGATGGTCAAACGTCCGAAGCTGGCAGTATTGCAATCCCTTCTCCTGCAGGATCGGAACTTCATATTCCTGGGCGCACATCGAGTCTGGGAACTGCGTCTGCAACCCAGCTTAGCCGTGCACAGTCAATGACAAAAAAGTTCATCAAGAATGCAGAAGATTTCTTTGGTCTCGGTGATAATGACGAACAGCATGCTAATCTAAACCGCAAGTGGACTCAGCGGAGAAAACGGCATTATCAGAAGCGCTATGGGGCTCTTGTTGGTTTTGAGGATGAGATTGATGGGGTCCCACAACTTAGCAAACAAACCACAGTAACAGGAACGGGAAGCATAAGCAGCTACCAAAGCTCTCGTCAGCATGACCCAAACTTGATGCGGACTTTAAGCAGAAGGGAATCTGTGGCAAGTTTAGCATGGAAGAAAGTGAAAAAGATGAAAGATGATCCTATGGCCTTTAAATCTCCTGGGAAATCACAACCAGTCAGTATGCTTCTAGAGGCTGGGAGGAGCTTCTCACCAGCTGTCATGTCCCAGCTAGATGTGGATGAAGTAGACAGTGCATTCCATGGGGAAGGTGACAGGGATGATGATGTAATCAATGATGAAGTGTTCTTCAGTTTTGCACCTGATAAGACAAGAAGAACAAAAGAAAAGTCAGGATTTTTACCTGGAATTGAAGAAGAAAAACCTGCAACCCCTGAAATCCTTCAAGATGGCAAAGATGAGGTTGAAGGACCTCCTGCACCAGAGCCCAGGGCACTCATTCGCAGCACCCGAGGGCAAAGGATTAGAGACAGACCACCAGCAGCAAATGCTAATCGCAGACAGTATGGCAAAGGGATGGTTGGTAGATTGTTAAATAGAACTATCAAACGAAAACGTTTGACAAGTAGTGTCAAGAAACAGATTGAACTACTCACTGACCACAGGCCTTTCTTTACATACTGGATTTCGTTTGTACAAACAGTTGTGCTGATTGTGGGACTAGCAGTCTACAACTTTGCACCCATTGGATTCACAGAGACTACAAGGGAAGCTGTGATTGACAAAAGTCAAGCTGGAACACTTGTACCAAGTAAAGTGTCACGAACCTTTGTTGAAAATTTCTGGATTGGTCCAAATCAGGCAGGCTTGATCAAAATGGGTGCTAAGTTTGCACCTTGTATGCGGCTTGATGACAATCTAAGGAGAGTGCTGGAAGAGGAAAGAAGAATTGAGAATGAAACAGGCTGCTGTGTGAAATCTGATGATTCAGGCTGCATTCAAACATCACAGAAGGCCTGTTCAAAAGCATTTGCTACCTTCTATAAGACCTCCAAAGACGGAAAGAGGAGAGTTGTTTGTGGACAAGATCCAGAGGCATGTTTAGATCCACCTTCCATAGCCCCGGACGAATGGGATCCCGCGGACATTACTAAATGGCCTATTTGTAAAAGGAACAAGGAAAATGTGACACACTATCGATACATGAGCTGCGAAATCACTGGTCGGCCGTGCTGCATGGGAAATGAGGCCAAGTGCCGCATTGTTAGCAAAGATGAGTGCGATTTTTTCAACGGAACATACCACGAGAATGCGACGTTATGTTCTCAGGTGGATTGCCTCAGCGAAACATGTGGCATGCTGGACTTTCATCGCAAAGATAAACCCGACCAAGCTTATCGTCTTTGGATGGCAATATTTGCGCATGCGGGGATCATCCACTTGGCCTGCACCTTGATATTTCACTTTACCATTATGCGTGACTTGGAAAAAATGGCTGGCTGGCTGCGCCTGTCAATCATTTACATATTAAGTGGGATTGGTGGATATTTGTACAGTGCAATTCTTCTTCCATATCAAGCTGAGGTTGGTCCGTCTGGTTCCATCTTTGGAATAATCGCCTGTCTGTTTGTTGAGCTGCTTCAGAGCTGGCAGATGATCGCCCGTCCGCTTATAGCCCTGGCCAAGTTATTCGGCATAGTAATGGTGTTATTGATCATCGGGCTTCTTCCTTACGTCGATAACTTTGCGCACATGATTGGTTTTGTGTTTGGCTTTTTACTTGCCTTCATATTTCTTCCTTACGTGTCGTTCGGAGAATTCGACCGGAAAAGAAAGCAAATGCAGATTGTAGTCTGCTTCGTATTAGTGTCCGTGTTGTTTGCGGTGGGATTTTTGGTGTTTTATATCTATCAAGGCTCAACGTGTGTCGGCTGCGAGTACTTGAACTGCATTCCTTTTACTGAGGACTTCTGCAAGCCTTACACCCTCGGACAATACCTGCAACCAAGGGCAAGTTAA

Transcript

amic_s0095.g27.t1

ttGGTGATGAAAGGTTCAGCGTGGTCCCATGAGAGCCATACCTATTACCTCTACTCTTATCTATGAAATTCAGTTGTAAAGAACCATTACTCAACCCTAAACTTGAACCGCCTGTCCTCAAATGCCCATTAAATTGCCTCTTAAAGATAGCACTTAACTAGTCAAGAAATCAAATGTTGGACAAGTTTAATTGGTCACAGGGAGGGTATAAGAAAGCTGTGTTTAATTCATCGCTTTCTTCGTTACAAATAAGTTGGAGTCATAAAACAAAGTGATTGCCATGGTTTTTTCCTGAAATACTGGTTACGTGCTTGGCTTTAGTGAAGAGTTAGTACTCATGTATCCTGTTGTGAGTCTGGGACACCTTATGGGTGGGTTGTTTTCTTAATTACCTGGAAATGATGACAGTTTCACCTTTTTGCATGATACATAACTGccagatcacctggTGTAATTTACATCCCTAAGAGGGTCCCTTCTCAATACCAGGTGGTGTGTGACTTCTGGCAGCTCTATGTTGGATGAAGGGTTTAGATTCCAGAGAAACTGTTATGAGGGAAGTGAAACATGAAAATATGGTAAAGAGCAGCTTGATAAGGGTCACATTTTGCCACCCTAAGAAAATTGAAAGGCTGAAGTTTTAAGCAATAGCCTTTTGCATTTGTTGTAATGAAGCTCCAGTGCTTGAAGTGTTCAGTTTGCAGATTATCTTCTTTCAGTTGTAATTTGACTCTTTCCAGCTCATTCCATATAGCACACTTCTGAACCCTCAGTGCTCCTCTATTTGAAAGGCAAAAAGCCCTTTGCGTGATATCGCCTTGCTTTAACTGTTTGCAATCCTATCCTCAACCCTAAACTTGTGTGTGAAAGTATAGAGTGTTTGAAAGTATAAATTGTCTCAAAGCACATCTGGCTATGATATCCAAACCCAATGTCACCAGAAATAATGAAAATTGTAAGAGTGACGTTTGTTGGGTTTGATATTTTTGAGTAGCATGGTAGGTTTATCTACACTTCAATTCTTTATGCAAATTTTTTTCCTCTTTCGGTGGAGGTAGGTAGGTATGAAAACTATTGCTTAATTATTCTGTGCATGAATTTTAGTTTTTTTCACGATTCAGATCCGTTTTGGGGGTTTTCCCTACTCTCTCCCCATCATTTCTCTGGCGAATAGTCCATCCTTTATTTGTTGTTCTGAACCAATTGGTACAGAATTATGTATCTATACACCCACGCTTCCATTTTCTACAAGTAAACTGATTGCAGTTTCATTATGTTCCTGATGGAAAAGGGTTGAACAAAGAATACATGAAAAGGGGTTATATTTACTGAGAGTATTTGCAGTCTTATACACTTGGATGACACTTTTCAAGCCTCTTCAATTAAACGCCACACCTTTTCCGCTTAACGAGGCGCGGCGTAGAATTGTTCGTCACCAAGCCTCTTTCGAAGTTGTTCGTCATAGGATAAAAATTGTTTGATTTCGCGAATTTATCGTGAGGATACAGAGATTATTTATCAGAGATTTCTAACATTTAGTTAAGAAACCGGGCATGGCTAGTGCTTACCAACCTACCACAATTCAGGATGAAGATATAGACGACAATGAACGAACTGCTTTCTGTAACCCGTTCCATAGTCGAAGACATCACGATTTCCACACAGCTAAACAAGATGACCCCATGACAGGAGAAGAGAATGAAGGAGATCGGCACGAAAGGGTGAATCAATGGCTATTTACCCGTTGTGTCTCGCGACAGGATGGTCAAACGTCCGAAGCTGGCAGTATTGCAATCCCTTCTCCTGCAGGATCGGAACTTCATATTCCTGGGCGCACATCGAGTCTGGGAACTGCGTCTGCAACCCAGCTTAGCCGTGCACAGTCAATGACAAAAAAGTTCATCAAGAATGCAGAAGATTTCTTTGGTCTCGGTGATAATGACGAACAGCATGCTAATCTAAACCGCAAGTGGACTCAGCGGAGAAAACGGCATTATCAGAAGCGCTATGGGGCTCTTGTTGGTTTTGAGGATGAGATTGATGGGGTCCCACAACTTAGCAAACAAACCACAGTAACAGGAACGGGAAGCATAAGCAGCTACCAAAGCTCTCGTCAGCATGACCCAAACTTGATGCGGACTTTAAGCAGAAGGGAATCTGTGGCAAGTTTAGCATGGAAGAAAGTGAAAAAGATGAAAGATGATCCTATGGCCTTTAAATCTCCTGGGAAATCACAACCAGTCAGTATGCTTCTAGAGGCTGGGAGGAGCTTCTCACCAGCTGTCATGTCCCAGCTAGATGTGGATGAAGTAGACAGTGCATTCCATGGGGAAGGTGACAGGGATGATGATGTAATCAATGATGAAGTGTTCTTCAGTTTTGCACCTGATAAGACAAGAAGAACAAAAGAAAAGTCAGGATTTTTACCTGGAATTGAAGAAGAAAAACCTGCAACCCCTGAAATCCTTCAAGATGGCAAAGATGAGGTTGAAGGACCTCCTGCACCAGAGCCCAGGGCACTCATTCGCAGCACCCGAGGGCAAAGGATTAGAGACAGACCACCAGCAGCAAATGCTAATCGCAGACAGTATGGCAAAGGGATGGTTGGTAGATTGTTAAATAGAACTATCAAACGAAAACGTTTGACAAGTAGTGTCAAGAAACAGATTGAACTACTCACTGACCACAGGCCTTTCTTTACATACTGGATTTCGTTTGTACAAACAGTTGTGCTGATTGTGGGACTAGCAGTCTACAACTTTGCACCCATTGGATTCACAGAGACTACAAGGGAAGCTGTGATTGACAAAAGTCAAGCTGGAACACTTGTACCAAGTAAAGTGTCACGAACCTTTGTTGAAAATTTCTGGATTGGTCCAAATCAGGCAGGCTTGATCAAAATGGGTGCTAAGTTTGCACCTTGTATGCGGCTTGATGACAATCTAAGGAGAGTGCTGGAAGAGGAAAGAAGAATTGAGAATGAAACAGGCTGCTGTGTGAAATCTGATGATTCAGGCTGCATTCAAACATCACAGAAGGCCTGTTCAAAAGCATTTGCTACCTTCTATAAGACCTCCAAAGACGGAAAGAGGAGAGTTGTTTGTGGACAAGATCCAGAGGCATGTTTAGATCCACCTTCCATAGCCCCGGACGAATGGGATCCCGCGGACATTACTAAATGGCCTATTTGTAAAAGGAACAAGGAAAATGTGACACACTATCGATACATGAGCTGCGAAATCACTGGTCGGCCGTGCTGCATGGGAAATGAGGCCAAGTGCCGCATTGTTAGCAAAGATGAGTGCGATTTTTTCAACGGAACATACCACGAGAATGCGACGTTATGTTCTCAGGTGGATTGCCTCAGCGAAACATGTGGCATGCTGGACTTTCATCGCAAAGATAAACCCGACCAAGCTTATCGTCTTTGGATGGCAATATTTGCGCATGCGGGGATCATCCACTTGGCCTGCACCTTGATATTTCACTTTACCATTATGCGTGACTTGGAAAAAATGGCTGGCTGGCTGCGCCTGTCAATCATTTACATATTAAGTGGGATTGGTGGATATTTGTACAGTGCAATTCTTCTTCCATATCAAGCTGAGGTTGGTCCGTCTGGTTCCATCTTTGGAATAATCGCCTGTCTGTTTGTTGAGCTGCTTCAGAGCTGGCAGATGATCGCCCGTCCGCTTATAGCCCTGGCCAAGTTATTCGGCATAGTAATGGTGTTATTGATCATCGGGCTTCTTCCTTACGTCGATAACTTTGCGCACATGATTGGTTTTGTGTTTGGCTTTTTACTTGCCTTCATATTTCTTCCTTACGTGTCGTTCGGAGAATTCGACCGGAAAAGAAAGCAAATGCAGATTGTAGTCTGCTTCGTATTAGTGTCCGTGTTGTTTGCGGTGGGATTTTTGGTGTTTTATATCTATCAAGGCTCAACGTGTGTCGGCTGCGAGTACTTGAACTGCATTCCTTTTACTGAGGACTTCTGCAAGCCTTACACCCTCGGACAATACCTGCAACCAAGGGCAAGTTAACCCTCCGTCGGTTGTCATGAAAATATTGGTAATTTATTACTGGATTGTGTTGTAGGCTGATGAGCGGAGTTTTTTCTCACTTCGTCAGTGCGCGTGCCATTATCGGTTTTGCGAGTCGTCCTTTAGAATGCTTTGCGGTCGGGTCATAAGGTGCAGTTTGAACTCGATTAGTGAGTCACAAGGATTTCAAAAGAGAACTTACGTGCCAGACTTCAGCTTTTAATCGGGACTGAGACATTTTAAGCGACAATTGTGTCTCTGATAACGATGCGACAAATCTTGTTGAATTGGAACTTGTTGTAGCACTTCCGCCCCTAATTAGTTTGCCATTTGATCTGTTTACGCACCGTGTTTGGATTCGATAACTCGTGTAACACGCAATAAAAGATCCTCCCGGCTTTGAGCTACCGGCCGGGAGAAAGTACAGGTGAAACACTACATTTAAACCCATCTATTTTCTCTTGTTGTGACAACATTGAGATGAAACGCCTCAGTCTTCGAACTTATATTTTAATAATCCGCGAACTACAAATCGATCCCCGCTTTTCTCATGCTTGTCAGTTTGAATCAACGTTAAATAAGGTTGCTTTTTTTTTTTAAGAACGCCCCGTGCTATCTAAGCACTGTATTAGATGTTTACATCACTGTTCAATAGTTGTTGGTGTTGAATTGTTTCTGCAAAGGCTCTTGGTCTCTGAGCAACGACGATGTATTTTTTTTTTCTGCGGACGAAAGATATACAATAGCGAGTGGTCATTTTGTTGCCTTCTGCCGAGAACATTTCACCTCCACACAGAAGTCAGTTGACAGTTATTTGAGATCACACAAGACAGCCATGTGAACTACAGGTGTAAATTTTTCGTTTCGTTAGATGTAACTCGACTTCCATAACTGCGcaccctgctagcagagccttttcttacggta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GMF8	Inactive rhomboid protein 1 OS=Danio rerio OX=7955 GN=rhbdf1 PE=2 SV=1
B1MT31	Inactive rhomboid protein 1 OS=Plecturocebus moloch OX=9523 GN=RHBDF1 PE=3 SV=1
A9L8T6	Inactive rhomboid protein 1 OS=Papio anubis OX=9555 GN=RHBDF1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001895 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01694 all species →	Rhomboid	Rhomboid family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035952 all species →	Homologous_superfamily	Rhomboid-like superfamily	Interproscan
IPR051512 all species →	Family	Inactive Rhomboid	Interproscan
IPR022764 all species →	Domain	Peptidase S54, rhomboid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45965 all species →	INACTIVE RHOMBOID PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0042058 all species →	Biological Process	regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0050708 all species →	Biological Process	regulation of protein secretion	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27588	RHBDF; inactive rhomboid protein	-	TNF signaling pathway	ko04668	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.