Gene detail

Detailed information of amic_s0096.g18.t1 in Acropora microphthalma

Genomic Location: sc0000096_pilon:249517...272895
NR annotation: XP_044180451.1, uncharacterized protein LOC114977334 isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0096.g18.t1

ATGGCTAAGGAGGTTCCTCAGTCCGTCAAGATTTCTTTGAAAGCCGTTCTGTTGTCTTCCGAGAAAAGCAAGGGCGTAAAACAAACCGCTATTCTGAAAGATTTCCACAAGTTGAACAACTACAAGCTTGATGTTTCGAAATATGGATTCCATGATTTGTACGAATTTTTGCTGGCTGTTCCTGATGTAGCGAGACTGGAATATTCCCCTAAAGATGGAGAAAATAGAGTTTTCGGTGTTGGAGGCGATGGCTTTTATATGTCAGCTCACGCAAAGAAGGCTGAGGGAGTACCAAACGGGTTGAAACCTCTGCCTCCATCCGATTGGCCTCGAAACAAGGCAAAGGGCAGCGTGGAACGAACTGTTATAGACAGTAAGTCTTCTGTGAGAGTGACTGTTTCTTCTGACTCAAAAAAGAAGATTTTACCCGACGCACATGGACTGTATGTCTTGCATATAAAGAATTTACCCTTAGATTGTCAAGAGAATGATTTAAATTCCATTTTCAAGAAATATCAAAGCTTGGTGAAAGTAAAGAGGGAAAAAACACAAAATAACTGGATTGCCTTCGCTAGGTTTTCTAACCAACAAGATGCTGTTGCAGCTCTGAAGGAGGTTGATGGTTTTAATTTAAAAGGCTGTACTTTGATAGTCTCTCCTGAAATTAAGCAACAAGCTCAAGCCCAACAAAAATTGAAGGGATCTGCGGTGAAGAAACAGGAAAATGAAAGAACTTTTAAAAAAGAAAGTGAATTATCTACTTCTGGGAAAAATGATAATGGACCTTTGCCTTTGATGAGACTTAATGTGGCTAATCCCGAAAATTGGGAGCAAGATGGAGGATGCGATAAAGTGGCAAGAGACAAGATTATTGGTAAAGAGGATTTGGAATCATGTGTTGTTAAAATCAACGATGGTTATCCCATTCATGTCAGTAATTTTCCAGCAGGAACAAATCAGGAAACTCTTAAACAGATATTTAGTGTATTTGGAGAAGTAATTCAAGTTGTAACCCAAAAAAAGTTTGCTTTTATTTACTTTTCTAAAAAAGAAGAGGCTATTGCTGCGCTAACAATGCAAGGCCGAGTTAAAATGGGTGGCAAGTGTCTGACAGTGACTCCACGATATGCCAAAGACAAGCAACACAAAAAAAACCTCACAGGTGCTTCAACAACAAGTCTCAGTTCTAGTCAGAGTTCTCTTTCGAGTGATACTGGAAGCTCTTCAACATCTCTGTCAGCTGCAAGTCAGGTTGCCTCTTATTCAGAGGCATCTTTCTCACAAGATATTGAAAACTGTGCCACAAGTGCAAAGTTCCTTGAAGCCAGTGCATGCAAAAAATTGGGTGAAAATGTTACAAGACTTGATCATGTTTCAAACTGGTCAAGTGAAACATGCTCATTTCAAGGAGAGAAAAAACTTGGAAAAAACTCAAGCATTTGTAACTCCAGTGGGGCTTTTCTTAAAGATGGATTCAGTGCCCCTGATACAAGGCCTGGTGTTCTTTTATCTGAAATTTTTAATGAAAACGTTCCAATGCATTTGCTTCTTACCTATGAAGAAATGAACACTCTTATGAACAAGTGTAGGAAATCCATAAGAACTGCAAGGAGCATTGCTTTTGAAGAGTTTTGTGTCTTGATAACTGATGTGGTTGACTCTTGCCATTTCTGGGCTAATTTGGATGACAGGAGTGATAGCTATAAAAAGCTCAAAAAAATGCAAGAAGAACTGCAGAATGTTACGCATTACAGGCATTGCATGCCTCTCAAATATCAGTTGGGTGCTGCCTTATTTTCTGAAGATAAACAATGGTACAGATGTTGGTGTGTGGAAGTAAGCACGCTGGAAAAGAGAAAGGTGAAAGTGTTCTTTGTAGATTTTGGCAACTTTGAGTGGATTTCTTGGGACCAATTTACAGACATAGCTGAAGAGTTTTGGGATCTTGCACCTCAAGCCTTGCCTTTCAAGTTGTCAGGTCTCGAAAATGTTGCAAATTTGGCGACAGATGTTCAAACGGAAGGAGCCAAATACCTCAAAGATTTAATTTGCAATAAAGTATGCAGGGCAAAGAAGGCAAAATCTTCAGCTCTCACTGAGCGGCATATAATTGAGGTTGAGTTGGTCCTGGATGACGCAAGTATCAATCAACAGATGGCTAAGACAAGATATGTTCAAGAGACGAGAACGACATCTCAAGAGGCAAACCAGAGCCCATCTCTGCCACAGTCCACTCCAACAAGGTCACTGCCTTCTCAGCAACCGCAAAGGCATATCCCACCGCATCCGTTTATGAAAACCAAGACTGCTGCTGCCCCGACAGCAAGGAGACCACCAGATCTCACTTCAAAACTATTGGATGGCGCCCAGCTTCAATCTACACAAAGCCCTTTCCAGGGTGTCCAACCTAGATCTGATCCACAGACTTTGCCAAAAGTAAAATCTGATCTAAGTAATACATCGCCAAAAGGAAACTTTCAACATCAAAAGTCGCTGCCAAACCATTTGTTTCCTAAAAGGGAGGTTGTTGAAATCTTCATCTCAAATGTTGTCTCACCTGATGATCTATGTTTTTACTTTTCTGGAGCTGAAACAAAATATACTCTTGGTAAAATTCGGAATATTTTGAATGACGGAGTATACCCGCATGCTGAAGGAGGAAAGATCTATCCAAGAAAAGGAGCATTGGTGATGAAAGTACTGGATAAAATAAAGCTCCGCGTTGAAATCATTGACATCCCAGGAAACGCTGGACATGGAATAGACCAGGTGAAAGTAAGGGATATTGACTTTGGGAAAGTAGAAACGATTTCTCTCAGAGCTCTGTATGCACTTCCTGCGTCTGTGAAATGTATACCACCCCAAGCAAAGTATGGCAAGCTAGCAGGAATACGGAAAAAGGAAGGAATGAAGTCTTATCCAGACCCGGCATCTGACTTTTTGATAGATGCAAAAAAGAGGAGACAGGCCATGCAAGCATCGATCGTAAAGCAAGAGCCAAATGGCCTGTACCATCTCGAGCTGTTTGAATTTTCAACCTCCGCTCCAAGTTTCAATGTTCAGCTGGTGGACCTGGATTACGCTGAAATAGATCCATTGCAGTTTAATATGTTACCTTCTTCGGCAGGACAGACCCCAAGGCTTGCAGAAGACAGGAGAGCTGAATCACATCAATGGGACACACATTCAGTGAATTCTGATTGGGAAGAACATTTGATAGAAATAAAAGACAGAGACGCTGTTTCTCCAGCAGGATCTTGTTTAAATATGAGTGGACGGCAATCAATGGAACATCTGTATGTCCCTCCACCACCTCAAATGCATACTTCATTTACAAACACTGAACCGTGGTCTTCGTTTAGTTCCAAAGGTATCGATTTTTCTGAATCACCTGGAGCGACAAGTGGGTTGCATCTTGGTGCGAGCCACTCCCCTCGCTTTTCCAACAGCGAGCCATGCGAATTAGAACTTCCACCATCGGCGGGTTTGGCGAGTGGTTCGAACCTGGATGGGCACTCAAGCTTCTCAGCAGCGACAAAGTTCAGTGTCTTCAGTAATGTTGTACATCCTCACTCTCCGTCTGCCACGGGCTCAGACACCAGTGGAGTGTGTTCAGATACTAGTGTCAGCAGCTCGGCAAGTACTGGAAGCTTTGCAAACATGGAGAACCAGTCAGCTTCGCAGGAAAACATTTTGGCTTCACAACGATCTTTGGATGGTGCTTCAACTTTGCAGGTTAACAAAGAGAGAGAGGAACTTATTGAAAAAGATGAAGAGTTGAAAAGGATCTTGGAGATGCCGCGTAAGGAAATGAAGAACATTTTAAGTTTGCGACAAGAAAAGGAGAAGCTGGAAAGAAAAATCAGGATTAAAGGCCTTGAAAATCACATCTTGAAGCTCCAGAAAGAGCTGAAACATCTGGAGATAGAAAAGGAGGAATTAGAAAATGAATTTGATCCATGA

Transcript

amic_s0096.g18.t1

GGGCATTTCAACGTGGACCTTGTGTTCAGCTGTTTTGCGGAGTGTCATGGCTAAGGAGGTTCCTCAGTCCGTCAAGATTTCTTTGAAAGCCGTTCTGTTGTCTTCCGAGAAAAGCAAGGGCGTAAAACAAACCGCTATTCTGAAAGATTTCCACAAGTTGAACAACTACAAGCTTGATGTTTCGAAATATGGATTCCATGATTTGTACGAATTTTTGCTGGCTGTTCCTGATGTAGCGAGACTGGAATATTCCCCTAAAGATGGAGAAAATAGAGTTTTCGGTGTTGGAGGCGATGGCTTTTATATGTCAGCTCACGCAAAGAAGGCTGAGGGAGTACCAAACGGGTTGAAACCTCTGCCTCCATCCGATTGGCCTCGAAACAAGGCAAAGGGCAGCGTGGAACGAACTGTTATAGACAGTAAGTCTTCTGTGAGAGTGACTGTTTCTTCTGACTCAAAAAAGAAGATTTTACCCGACGCACATGGACTGTATGTCTTGCATATAAAGAATTTACCCTTAGATTGTCAAGAGAATGATTTAAATTCCATTTTCAAGAAATATCAAAGCTTGGTGAAAGTAAAGAGGGAAAAAACACAAAATAACTGGATTGCCTTCGCTAGGTTTTCTAACCAACAAGATGCTGTTGCAGCTCTGAAGGAGGTTGATGGTTTTAATTTAAAAGGCTGTACTTTGATAGTCTCTCCTGAAATTAAGCAACAAGCTCAAGCCCAACAAAAATTGAAGGGATCTGCGGTGAAGAAACAGGAAAATGAAAGAACTTTTAAAAAAGAAAGTGAATTATCTACTTCTGGGAAAAATGATAATGGACCTTTGCCTTTGATGAGACTTAATGTGGCTAATCCCGAAAATTGGGAGCAAGATGGAGGATGCGATAAAGTGGCAAGAGACAAGATTATTGGTAAAGAGGATTTGGAATCATGTGTTGTTAAAATCAACGATGGTTATCCCATTCATGTCAGTAATTTTCCAGCAGGAACAAATCAGGAAACTCTTAAACAGATATTTAGTGTATTTGGAGAAGTAATTCAAGTTGTAACCCAAAAAAAGTTTGCTTTTATTTACTTTTCTAAAAAAGAAGAGGCTATTGCTGCGCTAACAATGCAAGGCCGAGTTAAAATGGGTGGCAAGTGTCTGACAGTGACTCCACGATATGCCAAAGACAAGCAACACAAAAAAAACCTCACAGGTGCTTCAACAACAAGTCTCAGTTCTAGTCAGAGTTCTCTTTCGAGTGATACTGGAAGCTCTTCAACATCTCTGTCAGCTGCAAGTCAGGTTGCCTCTTATTCAGAGGCATCTTTCTCACAAGATATTGAAAACTGTGCCACAAGTGCAAAGTTCCTTGAAGCCAGTGCATGCAAAAAATTGGGTGAAAATGTTACAAGACTTGATCATGTTTCAAACTGGTCAAGTGAAACATGCTCATTTCAAGGAGAGAAAAAACTTGGAAAAAACTCAAGCATTTGTAACTCCAGTGGGGCTTTTCTTAAAGATGGATTCAGTGCCCCTGATACAAGGCCTGGTGTTCTTTTATCTGAAATTTTTAATGAAAACGTTCCAATGCATTTGCTTCTTACCTATGAAGAAATGAACACTCTTATGAACAAGTGTAGGAAATCCATAAGAACTGCAAGGAGCATTGCTTTTGAAGAGTTTTGTGTCTTGATAACTGATGTGGTTGACTCTTGCCATTTCTGGGCTAATTTGGATGACAGGAGTGATAGCTATAAAAAGCTCAAAAAAATGCAAGAAGAACTGCAGAATGTTACGCATTACAGGCATTGCATGCCTCTCAAATATCAGTTGGGTGCTGCCTTATTTTCTGAAGATAAACAATGGTACAGATGTTGGTGTGTGGAAGTAAGCACGCTGGAAAAGAGAAAGGTGAAAGTGTTCTTTGTAGATTTTGGCAACTTTGAGTGGATTTCTTGGGACCAATTTACAGACATAGCTGAAGAGTTTTGGGATCTTGCACCTCAAGCCTTGCCTTTCAAGTTGTCAGGTCTCGAAAATGTTGCAAATTTGGCGACAGATGTTCAAACGGAAGGAGCCAAATACCTCAAAGATTTAATTTGCAATAAAGTATGCAGGGCAAAGAAGGCAAAATCTTCAGCTCTCACTGAGCGGCATATAATTGAGGTTGAGTTGGTCCTGGATGACGCAAGTATCAATCAACAGATGGCTAAGACAAGATATGTTCAAGAGACGAGAACGACATCTCAAGAGGCAAACCAGAGCCCATCTCTGCCACAGTCCACTCCAACAAGGTCACTGCCTTCTCAGCAACCGCAAAGGCATATCCCACCGCATCCGTTTATGAAAACCAAGACTGCTGCTGCCCCGACAGCAAGGAGACCACCAGATCTCACTTCAAAACTATTGGATGGCGCCCAGCTTCAATCTACACAAAGCCCTTTCCAGGGTGTCCAACCTAGATCTGATCCACAGACTTTGCCAAAAGTAAAATCTGATCTAAGTAATACATCGCCAAAAGGAAACTTTCAACATCAAAAGTCGCTGCCAAACCATTTGTTTCCTAAAAGGGAGGTTGTTGAAATCTTCATCTCAAATGTTGTCTCACCTGATGATCTATGTTTTTACTTTTCTGGAGCTGAAACAAAATATACTCTTGGTAAAATTCGGAATATTTTGAATGACGGAGTATACCCGCATGCTGAAGGAGGAAAGATCTATCCAAGAAAAGGAGCATTGGTGATGAAAGTACTGGATAAAATAAAGCTCCGCGTTGAAATCATTGACATCCCAGGAAACGCTGGACATGGAATAGACCAGGTGAAAGTAAGGGATATTGACTTTGGGAAAGTAGAAACGATTTCTCTCAGAGCTCTGTATGCACTTCCTGCGTCTGTGAAATGTATACCACCCCAAGCAAAGTATGGCAAGCTAGCAGGAATACGGAAAAAGGAAGGAATGAAGTCTTATCCAGACCCGGCATCTGACTTTTTGATAGATGCAAAAAAGAGGAGACAGGCCATGCAAGCATCGATCGTAAAGCAAGAGCCAAATGGCCTGTACCATCTCGAGCTGTTTGAATTTTCAACCTCCGCTCCAAGTTTCAATGTTCAGCTGGTGGACCTGGATTACGCTGAAATAGATCCATTGCAGTTTAATATGTTACCTTCTTCGGCAGGACAGACCCCAAGGCTTGCAGAAGACAGGAGAGCTGAATCACATCAATGGGACACACATTCAGTGAATTCTGATTGGGAAGAACATTTGATAGAAATAAAAGACAGAGACGCTGTTTCTCCAGCAGGATCTTGTTTAAATATGAGTGGACGGCAATCAATGGAACATCTGTATGTCCCTCCACCACCTCAAATGCATACTTCATTTACAAACACTGAACCGTGGTCTTCGTTTAGTTCCAAAGGTATCGATTTTTCTGAATCACCTGGAGCGACAAGTGGGTTGCATCTTGGTGCGAGCCACTCCCCTCGCTTTTCCAACAGCGAGCCATGCGAATTAGAACTTCCACCATCGGCGGGTTTGGCGAGTGGTTCGAACCTGGATGGGCACTCAAGCTTCTCAGCAGCGACAAAGTTCAGTGTCTTCAGTAATGTTGTACATCCTCACTCTCCGTCTGCCACGGGCTCAGACACCAGTGGAGTGTGTTCAGATACTAGTGTCAGCAGCTCGGCAAGTACTGGAAGCTTTGCAAACATGGAGAACCAGTCAGCTTCGCAGGAAAACATTTTGGCTTCACAACGATCTTTGGATGGTGCTTCAACTTTGCAGGTTAACAAAGAGAGAGAGGAACTTATTGAAAAAGATGAAGAGTTGAAAAGGATCTTGGAGATGCCGCGTAAGGAAATGAAGAACATTTTAAGTTTGCGACAAGAAAAGGAGAAGCTGGAAAGAAAAATCAGGATTAAAGGCCTTGAAAATCACATCTTGAAGCTCCAGAAAGAGCTGAAACATCTGGAGATAGAAAAGGAGGAATTAGAAAATGAATTTGATCCATGAAGATGTCTTGTGAGGATGGTGTTCGTTTGGTTTCAATCAGTGGACCTATTTGACTTATTTGTTCAGGAGAAAAGCTCTCTTGCAAGGACTCGCGTTGGCCGGAATAGTTTTAACAATTTAAAAATAGTCAAGTGTGGTGTTTGTTATTGTTATTGTTATATATGGCGTTTAAGATTCTACCGTCTAAGGGTTGTACCGTCTGTAGGCTCATTCGAGCCAAATCTTCGTTGCTGTACCCCTCCCCCTCTGGCCCTAGCGATATTCTTCTCTGGTAATCACCGGGGTCGCTCTCGTCAAAAGTTGATTACCCGTTAAGTGTTCTCTCTTTTTTTAACACGAAAAGAAGCAGATAAACTGGAGCTGTGGTGATTTATTGATGACGGGCTCTGTCCTCAAGTACTGTCTTTTTTTTGGAAGCATTTACTATGACAATCATTTGATGGTTAAATCATGAGCACTTCAAGACCACTTTGTACAGCTAACGAAACAGGATTTTTTTTCCTGAATGTTAAAGTAAAAAACTAAAAAATGTTATCTGTGAAACTACCGAGAAAGGTCAAGCATCGGGGGTTCAGCCGTGTTTGGATGAATTTTGAACATTTTGCAGTTGAAGATTGGTTGGAACAATCAAATTTGCATTTTTAAGAAAGGAGATACGGTCATTTTAGTTTCGTATTGTACTTTCCAGATACATGGTTTTATTGTAATAAAACAAAGAAAAGTTG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12872 all species →	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR025605 all species →	Domain	OST-HTH/LOTUS domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR041966 all species →	Homologous_superfamily	LOTUS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189 all species →	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0096.g18.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.