Gene detail

Detailed information of amic_s0096.g2.t1 in Acropora microphthalma

Genomic Location: sc0000096_pilon:19907...34495
NR annotation: XP_015754582.1, PREDICTED: phospholipid-transporting ATPase ID-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0096.g2.t1

TACTTCTCAGGCAGCTGAAGTGGACTTCTCGATGAATCCTTACGCTGATGGGAAATTTAGGTTCACTGATGAGACGCTGTCGGATGAAATTAACAATTACAATGAGGAGTGTCACGAGATGTTCCGTTTATTAGCAGTCTGTCACACTGTTATGATAGATTCCAATAGTGATAATTTGGAATATCAATCCCAGTCTCCAGATGAGGCTGCTCTCGTCACTGCCGCCAGAAATTTTGGATTCAcatttgtgGGTCGTTCGCCAACCACTATCACAATAGATGTCAAAGGAAAGGAGGAAATGTACGAGTTGTTGGCCATTCTGGATTTCAACAATGTGCGGAAACGTATGTCGGTCATCGTACGGCAAGGAAACAATATCAAACTTTACTGTAAAGGGGCTGATACTATTGTTTACGACCTCCTCGATCGTTCATGCAAACCGCTCATGACGAAAACCATGCAACATTTGAACATGTTTGCAGCTGAAGGTTTACGCACGCTGGTCGTTGCTTATAAGGACATATCCATGGACATGTACACTGAATGGGAGGCTAAATACAAAGCGGCCAGTTTGGCCATGGAGGACAGAGAAGAGCTGACACAGAAAGTGTACGAAGACATTGAACAGAATTTAGTGTTGATTGGTGCGACGGCGATAGAGGATAAGCTTCAAGATGATGTTCCCGACACTATTGCCACTTTAGCAGAGGCTGATATCAAGATTTGGGTACTAACTGGAGACAAAGTTGAAACAGCCATCAATATCGGATATTCAAGTCACTTACTCACAGACGACATGACGGAGGTGTTCGTTTTTAGTGGTGAAACACTGGATAGCGTGCAGCAAGAGCTAAAAGAATTCAGTGGCAAAATTTCGAGCGAAAACCGAAGCTCGCCCGTGTCCAAGATTAGCAGCAACCAGAACAGCCTAAGAGATGTCGGGGTTGAAGTCATTTCGTACAAAAATTCAGTTAGTGGGAAATTGCTAGCTTCAGCAGAGTCCACGAAAAAGACAGAAGAATCCTTTGGGCTGGTTATTCCTGGAAAAAGCTTAGCATTTGCACTCCATGAAAATTTGAAGCTGGATTTCTTGTCACTTGCGTGTATGTGTAAAGCAGTCATTTGTTGCCGGGTCACACCCCTGCAAAAGGCGTTGGTTGTTCATTTAGTCAAAGATAATCTCAGTGCTGTGACTTTAGCCATCGGTGACGGCGCAAATGATGTCAGCATGATTAAAGCTGCTCATATTGGTGTTGGAATTAGTGGACAGGAAGGGATGCAAGCAGTACTGGCTAGTGATTACTCGTTCGCTCAGTTTAAGTATCTTCAACGACTTCTGCTGGTGCATGGACGCTGGTCGTACTTTCGAATGAGTAAATTTTTGAACTATTTTTTCTACAAGAATTTTGCATTCACGTTGTGTCAACTTTGGTACGCATTTTATACTGGCTTCTCTGCACAGACGCTTTACGACGCATGGTTTATCTCATTTTATAACGTGCTTTTTACCTCAGCTCCTGTAGTGTTTTTAGCCTGCCTTGATCAGGATGTTTCAGAGACGAGCTGCAGGAACTACCCTCAACTCTACATACCTGGCCAAACAAATCAGTTATTTAACAAGAAGATATTTTTCCTTAGCTTGTTGTACGGCACTTTGACATCGTTAGCCATCTTCTTTGTACCGTATGGTACTTTTCACGATGCAGTCGCCTGCGATGGTCTAGAAACCTCTTCTGTGTCGTTCTTTGGCACTGTTGTCGCTGCTATTTTGGTTGTCGTTGTCAACGTGGAGATCTCGTTTCTCACGCAGTATTGGACGGGAATCAACCACTTTTTTACATGGGGAAGCATTCTcttttactttgccttttactttgtcttttactCGGAATTTGTGTTCAGTCTCTTTCCTCAAGGACACTATTACGGCATGCAGTTCGAGGTGTATGGAAATGGAACCTTTTGGCTTTGTATGTTACTTGTGTTGGTTATATGCACTATTCCTCGATTATCGTACTACTTCATTCAAAATGAACTCTACCCGTCAATGAGTGACACTGTAAGACGGAAAGAGGCAGACATGAAACCGAGCACAAGAGCATCGATCACGGAATTCAAACCGCAGTTGACTCGAAGGCGGAGTTCCAAACGATCGAGTTATGCGTTCGCCCATCAAGAAGGGTTCGGTAAAATTGTTATGTCCCCGGCTACATTTTTACGGAGAAAGTTTGGGAATGGAAATCGTGCCAAGAACTCAACAGTTGAAGCTATGTAAACTCCAGTTCGGACGTGAAAAGACGGCTGTACCTCCACAGGAACCTCGGGCCAAAAGGTTCGCCAGCACCACGTGGGAACAAAATCAAGAATGATGCCAAACGTCGCCGGCTAATATAAATTTGTACTACAAATGTGTTCCATGAAAAAAAGAGGTGGCGTTGATATTTGAGGAGGAAGCTAGACGTTTTCTTCAAGTGCTTACATCTGTTCTTAAGGGGTTTATTTCACTCCCAAGGAAGCTTGACGCTTTGGCCACTAAAGAATTTTCTCCCATTTGTGCGATACAAACGCGTAGTGCATGAGCAAAGCTACTACCTCTACTTTTCAGATCGGTTGCCTTTTGGCCAATTATACCTGATGTCATTTAGTGCAAGTACTTCAATCCCTAGCGCTCACAAATTCCAAAGATTCTTTGGGGATCGTCGCAGCACAACCCCAAAATGCTGATTCCTTTTGAACAGGGCTCTGGTACTAACAGTTTGTAACCACTATACATCTTATCAAATATTGTTGTGCTACTCTTTTTCCGAAATGCATTTCGTTGCAAATTCTGTTACTGCTACTGCTGTTCTGCTTACAAGTATTAGGGACCTTTAGATTCTAGGACGccaggtgatctggtgacgtaattcggaggactgggatgaaaaatttttaacg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P98198	Phospholipid-transporting ATPase ID OS=Homo sapiens OX=9606 GN=ATP8B2 PE=1 SV=2
P98199	Phospholipid-transporting ATPase ID OS=Mus musculus OX=10090 GN=Atp8b2 PE=1 SV=2
Q8TF62	Probable phospholipid-transporting ATPase IM OS=Homo sapiens OX=9606 GN=ATP8B4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16212 all species →	PhoLip_ATPase_C	Phospholipid-translocating P-type ATPase C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR006539 all species →	Family	P-type ATPase, subfamily IV	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR032630 all species →	Domain	P-type ATPase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24092 all species →	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0140326 all species →	Molecular Function	ATPase-coupled intramembrane lipid transporter activity	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0045332 all species →	Biological Process	phospholipid translocation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01530	E7.6.2.1; phospholipid-translocating ATPase	EC:7.6.2.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.