Gene detail

Detailed information of amic_s0096.g56.t1 in Acropora microphthalma

Genomic Location: sc0000096_pilon:861785...879376
NR annotation: XP_015777219.1, PREDICTED: CUB and sushi domain-containing protein 1-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0096.g56.t1

ATGCTTCATCATTATGCCATCATTTTGAATGTGTTGCTGTTGCAAGGCGTGAAAGCGAAAGAGGAATCTGCTTTGGCTCGCTGCATCTTTGGGGGAGACCCAGACAATGGCTTTGCTGTGCGGAATGCATTTTTCAATAGAACGGTTAAACACGGAGTACAGATAGTTTACCGCTGCAACGAACACTATACTCTGATTGGCTCTGCTACACAGGAGTGCAACAATGGCCAATGGACAAACGCTAGACCATCATGCAAAGGAGTCCCTCGTCAAGGAAACAGAATTGGATATGACTTTCGTCATGGCAGTAATGTAACATTCAGTTGTCCCAACGGCTATCTCATGGAAGGTGTTGGCGAGATCTTGTGTTCAAATGGCACATGGAGCAATAGGGTACCAGCTTGTAAAGCTCCGTGTGTCAAGTTTTCCAGACCAGCTAATGGGTACATGCGTGGAGATTTCAGGCATGGAAATCAAGTTAGATTTTTATGTCGTTATGGGTATCAGAGGATCGGAGCAGCCTCATCTACTTGTAACGACGGCACCTGGTCCAATAGCGCTCCTATGTGTAAAGGTATGTGCGTTAGGCCAATAGTTCCATCAAGAGGACCTCTAAATCTACATGGAAACAGTTTTCTCGATGGAGACGAAGTTCAATTTTCATGCATTGCAAACCACGATTTGTTTGGCAGTCAAAAAAGTCGATGTGTTGGCCGGAAATGGAATATAGGCATACCAGAATGCAAAGCCCGCTGCATCTTTGAGGGAGACCCAGACAATGGCTTTGCTGTGCGCGATGCGTTTTTCAATGGAACGGTTAAACATGGAGTACAGATAGCTTACCGCTGTCGCCAACGCTTTACGGTGATTGGCTCTGCTACGCAGGAGTGCAACGATGGCCAATGGGCAAACTCTCGACCATCGTGCAAAGCTTGCCAAAACCCAATCGGAATGGAAAACCCTTCCATCAGGAACATCAGGGTCACATCACCTGATAATCTTAGTTCGCCGAACTTTGCACGGCTTAATGGACGATTTGCCTGGTGTACGACAAAGCAAACTTACTTGCAAGTAAACCTCGGTAAACGTCATCAGGTGACTGCTATAGCAACACAGGGAGGACAGGATAACAATGGAATCATTCGTTGGGTACGAAAATACAAATTGAGCTTCTTTGCTGGCCCAAGGAAACAAATCTTTTACCAAGAGTCTGGAACACAACAGGTTATTGTTGGGAATCAAAACGCCTCCTCAACCATCACTTACTTCTTCAAGGAGCCTTTCATAACTCAAGTTGTGAGGATTTACCCTGTCTTTCATTCCACACCAGTCTGCTTGCGGATGGAATTATACGGCTGCAATCCAAACCCTGATTGCATCCATGTTGGATCGGTAGTTTGGGGATTATGGGAACGCGAAGGAGATTCGTTGAGCTACTACCTCGGGTACATCACCCAACTGAACGCCACTCACGTGGACTTTGTCCTGGATTACTATCAAAGCAAATTCCTGACACGCAGTTACAATCGAAGTGAGCCAGTGCTTGTAGTCGACAAAACCCCGAAAATGACTGACATTTCAGTTGGATCACGAGTCATAGCGGTTCATAGGAGAGCACATAAGGAGTGGTACAAAAATGATTGCATCCATGTTGGATCGGTAGTTTGGGGATTATGGGAACGCGAAGGAGATTCGTTGAGCTACTACCTCGGGTACATCACCCAACTGAACGCCACTCACGTGGACTTTGTCCTGGATTACTATGAAAGAAAATTCCTGACACGCAGTTACAATCGAAGTGAGCCAGTGCTTGTAGTCGATAAAACCCCGAAGATGACTGACATTTCAGTTGGATCACGAGTCATAGCGGTTCATAGGAGAGTACATAAGGAGTGGTACAAAAATGGTATCGTAATTCGGACCTCGAGTTCTAATTATGCATACGTCAGGTTCAATAGTGGAACAGAGAGATGGGTTCCACCGGGGGAACTTCGGTTAGAAAAGAGACCCCGTTTTTGTACAACTGGCGCTTGA

Transcript

amic_s0096.g56.t1

GTTTAATGTTTTATTCTTGTTCCTTTCTTGCTTGCTGAAACAAGAAATAGTGGCTTGCTCAGTGCAGAAAAGGACAGCTTAGTTGCAATGCTTCATCATTATGCCATCATTTTGAATGTGTTGCTGTTGCAAGGCGTGAAAGCGAAAGAGGAATCTGCTTTGGCTCGCTGCATCTTTGGGGGAGACCCAGACAATGGCTTTGCTGTGCGGAATGCATTTTTCAATAGAACGGTTAAACACGGAGTACAGATAGTTTACCGCTGCAACGAACACTATACTCTGATTGGCTCTGCTACACAGGAGTGCAACAATGGCCAATGGACAAACGCTAGACCATCATGCAAAGGAGTCCCTCGTCAAGGAAACAGAATTGGATATGACTTTCGTCATGGCAGTAATGTAACATTCAGTTGTCCCAACGGCTATCTCATGGAAGGTGTTGGCGAGATCTTGTGTTCAAATGGCACATGGAGCAATAGGGTACCAGCTTGTAAAGCTCCGTGTGTCAAGTTTTCCAGACCAGCTAATGGGTACATGCGTGGAGATTTCAGGCATGGAAATCAAGTTAGATTTTTATGTCGTTATGGGTATCAGAGGATCGGAGCAGCCTCATCTACTTGTAACGACGGCACCTGGTCCAATAGCGCTCCTATGTGTAAAGGTATGTGCGTTAGGCCAATAGTTCCATCAAGAGGACCTCTAAATCTACATGGAAACAGTTTTCTCGATGGAGACGAAGTTCAATTTTCATGCATTGCAAACCACGATTTGTTTGGCAGTCAAAAAAGTCGATGTGTTGGCCGGAAATGGAATATAGGCATACCAGAATGCAAAGCCCGCTGCATCTTTGAGGGAGACCCAGACAATGGCTTTGCTGTGCGCGATGCGTTTTTCAATGGAACGGTTAAACATGGAGTACAGATAGCTTACCGCTGTCGCCAACGCTTTACGGTGATTGGCTCTGCTACGCAGGAGTGCAACGATGGCCAATGGGCAAACTCTCGACCATCGTGCAAAGCTTGCCAAAACCCAATCGGAATGGAAAACCCTTCCATCAGGAACATCAGGGTCACATCACCTGATAATCTTAGTTCGCCGAACTTTGCACGGCTTAATGGACGATTTGCCTGGTGTACGACAAAGCAAACTTACTTGCAAGTAAACCTCGGTAAACGTCATCAGGTGACTGCTATAGCAACACAGGGAGGACAGGATAACAATGGAATCATTCGTTGGGTACGAAAATACAAATTGAGCTTCTTTGCTGGCCCAAGGAAACAAATCTTTTACCAAGAGTCTGGAACACAACAGGTTATTGTTGGGAATCAAAACGCCTCCTCAACCATCACTTACTTCTTCAAGGAGCCTTTCATAACTCAAGTTGTGAGGATTTACCCTGTCTTTCATTCCACACCAGTCTGCTTGCGGATGGAATTATACGGCTGCAATCCAAACCCTGATTGCATCCATGTTGGATCGGTAGTTTGGGGATTATGGGAACGCGAAGGAGATTCGTTGAGCTACTACCTCGGGTACATCACCCAACTGAACGCCACTCACGTGGACTTTGTCCTGGATTACTATCAAAGCAAATTCCTGACACGCAGTTACAATCGAAGTGAGCCAGTGCTTGTAGTCGACAAAACCCCGAAAATGACTGACATTTCAGTTGGATCACGAGTCATAGCGGTTCATAGGAGAGCACATAAGGAGTGGTACAAAAATGATTGCATCCATGTTGGATCGGTAGTTTGGGGATTATGGGAACGCGAAGGAGATTCGTTGAGCTACTACCTCGGGTACATCACCCAACTGAACGCCACTCACGTGGACTTTGTCCTGGATTACTATGAAAGAAAATTCCTGACACGCAGTTACAATCGAAGTGAGCCAGTGCTTGTAGTCGATAAAACCCCGAAGATGACTGACATTTCAGTTGGATCACGAGTCATAGCGGTTCATAGGAGAGTACATAAGGAGTGGTACAAAAATGGTATCGTAATTCGGACCTCGAGTTCTAATTATGCATACGTCAGGTTCAATAGTGGAACAGAGAGATGGGTTCCACCGGGGGAACTTCGGTTAGAAAAGAGACCCCGTTTTTGTACAACTGGCGCTTGAGGTCGACGCCGCGCCTTGATTGGGTCGATCCTGAAAAGTGCAATTAAACTGTCAAATGAGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96NU0	Contactin-associated protein-like 3B OS=Homo sapiens OX=9606 GN=CNTNAP3B PE=1 SV=3
Q9BZ76	Contactin-associated protein-like 3 OS=Homo sapiens OX=9606 GN=CNTNAP3 PE=1 SV=3
Q9C0A0	Contactin-associated protein-like 4 OS=Homo sapiens OX=9606 GN=CNTNAP4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000334 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR050350 all species →	Family	Complement & Cell Adhesion Regulators	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR003006 all species →	Conserved_site	Immunoglobulin/major histocompatibility complex, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19325 all species →	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0096.g56.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0096.g56.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.