Gene detail

Detailed information of amic_s0096.g62.t2 in Acropora microphthalma

Genomic Location: sc0000096_pilon:993857...1013956
NR annotation: XP_015777225.1, PREDICTED: probable ATP-dependent RNA helicase DHX58 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0096.g62.t2

ATGAGACCTCGGGAGAAGCAACTCATCGACAAGCGACTGAAGGATTTTATTGAAGAAGTTCTCCCTGTGGACTTGTTTCCCTTCCTACCTTGCTTAAAGCAACAAGACAAGGAAGAAATTGCAGCCGTACAGACAAACCATGGACCGATGAAGGCTACGCAGACTCTTGTCGATCGCTTGAAGCGAAGAGATAAAGCTTTCGCGAATTTTGTACAAGCATTACGAAAATGTGGCGGTGCTCACACTGCTCTACTCTTGGACCCCTTCTACATGATCAACGatgatgacgaggatgatgatgTTACTGTAGCAGATGGATCAGGCTTAACGTACAAAATGATTGGCACAGCCATTGATCTTGCCATTCCAGGAAACCTCATGCCTGTAGGAGCGTGTAGTGAAGAGCAGACGGAGGAGTGCTACAGATTGGAAGAGAGTGTGGCTGAACGCTACAAAGACCGCAAATCAAATGACAACAAGAGGATGCGAGAGGAACTTCAGAAGCGTCTTCCCCAAGGCGTTGTGTTTGTCAACACAGAAAAGGGATCGATCATTTCCACCTTTCGTCTGTCAAGTGAAAAGGCGGCCAAGGAATTATGGGAAATGTACTCCCAAGGGACATTTCAGTCGATGTTGCAAGAGGTCTTGGTTGGGGATGCAGTCAAACATGACGCGGAGAAACCAGAGGAATCATTGCAATTAGAATTAAACCTGGGTGAAGAACGTTTCGAGAAGATACGAAAGAAACTTGAAGAGATTGAACGCGATCAGGAAAGAGAAAATATGCTGAGTTTGTCAAGCGAAGGAGAAATTGGTAGCCTTGATGACAGTGCGGATGAAATTGACATCGAGATTCCTCCAGTATTTCTGGGAACCAAAGCTAACGCTATTGGTGGCTGTGAACTGGTGTTGCGAAAATACCAAAAAGAGTTAGCAGGACCTGCTATGGAAGGAAAAAACACCATTATCTGTGCTCCTACTAACAGCGGCAAAACGTACGTGGCAATTGAAATTGCTAAGAGGCACCTGGATTCCTATGCAAGAAATCCAGACAAGTCAGATGCGTCAGCTCCGCTTAATACAGATGTTTGTAATTTATTTAATCCAGGACCAACGAGGAAACCCAACGGGAACGACCAGCCACGGGTGGTGTTTATTGTCAGTACTGTAAACCTTGTGTTACAACAAAAGGAACGCTTTGAAGCTTTTCTTGGGGACAAGTATTCCGTGGCAGACATTTCAGGGTCGAACTGTGCAGAAATTCCCCTGAAATTCCTTCTTCAGAATAATGATGTGGTAGTGATGACTGCTATGATTCTCGTCAACGCACTGAAAGCTACGGAAAAAGGGAATCGAGTGGAATTGCGAGACATCAGCTTGTTGTTGTTTGATGAATGTCATCATGCTCATAAAGAACACCCCTACAACAGCATCATGGAGATGTATTTGGCTCTTAAGTCTCAGGCTGGACATCAGCAAAGACTACCACAGATTGTTGGTTTAACGGCATCCCTTGGTACAGGGAAAGCGAAGAGTGCTGAAAAAGCTAAGGAGCACATTATTCTTGTTTCTGCAAACTTGGACGCCGAAGAAATTTCAACTGTCCAGGAGAACCGAGAAGAACTGGAACAATACGTCAACTTGCCTAGTAAAGAACAGTATTTTGTGCCCAAGGACGAGCAAGATCCATTCGAAAATATCATCTCTAAGGTGATGAAGAACATTGAGGCTCAAATAAACAAATTTAAAGGAAAATCAGGCAAGGATGCGCCCTCAGATAAGGCTGGTCAGCAGTATCGACAATGGGTGGAAGAAGTCTACAAAGATTCAGTGGCGAGAGGTGATCGCTATATGGTGACTTACGCTGAACACCTCCGAGAATACCACATCGCGCTGACTTTGAACTCAAACACACGCATGAAGAACGCTAGGGAGTATCTTACGAAGTACTTCGAAGCGTTAGACACAGAAAAATTCACTGAAACTGACAAGAACTTGAAAAAGCTCTTCTACAAAGCAATGGGCATATTGGACAAGCACATCGAAAAATATGGCGAACCTGAAAATCCACGTTTGCTGAAACTGCAAGAATTGCTGTTGGATAATTACAAAGACGTCGAACGCCAGCAAGATAACAAGGATGAATCGGGCAAAAAAGAGGGTGACGGTGGCAGTGAAACTGAGGGAAGAAGAGATCTGGTTGAGGAGAACGACAAGAGTTGCGCCCaagaacaggaggttgaaaatgagaaggtgaagaacgatgcagaaaagaaggaggaggacagagaaagagaagacgaagCGTGTGCAACAGTGTTAGCTGAGGACACCGAGAAATTGAACGGTGAAGTTTCAAAGGAAAATCCTTCATTGGAAAAGACAGAGGAATTGCCTCCTGAAGCCGCCAGAAGTGATCATGCCTCAACAAAGCCAGATGACAATCAGAATATCCTTGGTGAGAGTGAATTGGAAGACAGTTCTGCCAACGAAAAATCGGAAGTTAAAAGCGAGAAAGATGATGCGATGCCAGAACAAGAATCACAGAACAACGCGAGGAGCACCTCATCTGAAGGGACAGAAAATGACGAAGGTTCAAGTGAAAACGGCGCCCACCATCCAGAGTGGGATGGCGCTAAAGGCATCCTATTTACCCGAACTCGCGAGTCTACCATTGCCCTATTTGATTGGATCAACGAAACGGAGGAATTAAGCAACGTCCTCAGGCCCGAGCTGCTTGTTGGAAGTGGCGATGGAAACATCGGAATGACTCAGAAAGAGCAGGAAGGAGTCATCAAGCGATTTAAAACAGGCGAAAGGAATCTTCTGCTGGCGACCAGTGTGGCTGAAGAAGGATTGGATATAAGTGACTGTAACTACGTCATTCGATACGACATGATGGGGAATGAAATCTCATCGATGCAGTCAAGGGGACGTGTCAGGGCGAAAGATGGAAAGTACACAGTGTTGGTCAAAGAGGTACAACGAAAGATCAGCCAGGAACGGTTTCTCAAGAAACACGTACGTGCCGCACAGAAGTCTGTGGTTTTGGCCGATGACGTGAACTTCAAGTGTCGAAAGTGCAAAGAATTTGTTTGCCAGGCGCACGATGTTCGTCGTATCAAAGGCAGCCACCATGTTATTATAAATCGTGAATGCCGTGACACAAAGGTGGATATGAAAGAACATCGGAATCCTAAGAAAATCGATGACATTGAAATGAATAAGAAAATTTTTTGCAAGAAATGCCATGAAGATTGGGGAGTCACAGCGCTTATTTATAACGTTGAATGGTTGTGCATCAAGATCAGCAGCTTCGTATTGGAATTCCCGGGGAGAGATACCACGAGGATGTACAAAAAGTGGAAGGATCTGCCGTTTGCTATCCAAGAAGCCGACGAAGAGGAGATTCTACGGCATGGTGCTGACAATTCCGAGGCAACGGATCTGTTCGACCTGGAATCTTGA

Transcript

amic_s0096.g62.t2

TTTGCCTTGGATCCTTTGAAGATAGACTCGGTGAATATTTTCCTAAAGGAGTGATCGATATTAACATGAGACCTCGGGAGAAGCAACTCATCGACAAGCGACTGAAGGATTTTATTGAAGAAGTTCTCCCTGTGGACTTGTTTCCCTTCCTACCTTGCTTAAAGCAACAAGACAAGGAAGAAATTGCAGCCGTACAGACAAACCATGGACCGATGAAGGCTACGCAGACTCTTGTCGATCGCTTGAAGCGAAGAGATAAAGCTTTCGCGAATTTTGTACAAGCATTACGAAAATGTGGCGGTGCTCACACTGCTCTACTCTTGGACCCCTTCTACATGATCAACGatgatgacgaggatgatgatgTTACTGTAGCAGATGGATCAGGCTTAACGTACAAAATGATTGGCACAGCCATTGATCTTGCCATTCCAGGAAACCTCATGCCTGTAGGAGCGTGTAGTGAAGAGCAGACGGAGGAGTGCTACAGATTGGAAGAGAGTGTGGCTGAACGCTACAAAGACCGCAAATCAAATGACAACAAGAGGATGCGAGAGGAACTTCAGAAGCGTCTTCCCCAAGGCGTTGTGTTTGTCAACACAGAAAAGGGATCGATCATTTCCACCTTTCGTCTGTCAAGTGAAAAGGCGGCCAAGGAATTATGGGAAATGTACTCCCAAGGGACATTTCAGTCGATGTTGCAAGAGGTCTTGGTTGGGGATGCAGTCAAACATGACGCGGAGAAACCAGAGGAATCATTGCAATTAGAATTAAACCTGGGTGAAGAACGTTTCGAGAAGATACGAAAGAAACTTGAAGAGATTGAACGCGATCAGGAAAGAGAAAATATGCTGAGTTTGTCAAGCGAAGGAGAAATTGGTAGCCTTGATGACAGTGCGGATGAAATTGACATCGAGATTCCTCCAGTATTTCTGGGAACCAAAGCTAACGCTATTGGTGGCTGTGAACTGGTGTTGCGAAAATACCAAAAAGAGTTAGCAGGACCTGCTATGGAAGGAAAAAACACCATTATCTGTGCTCCTACTAACAGCGGCAAAACGTACGTGGCAATTGAAATTGCTAAGAGGCACCTGGATTCCTATGCAAGAAATCCAGACAAGTCAGATGCGTCAGCTCCGCTTAATACAGATGTTTGTAATTTATTTAATCCAGGACCAACGAGGAAACCCAACGGGAACGACCAGCCACGGGTGGTGTTTATTGTCAGTACTGTAAACCTTGTGTTACAACAAAAGGAACGCTTTGAAGCTTTTCTTGGGGACAAGTATTCCGTGGCAGACATTTCAGGGTCGAACTGTGCAGAAATTCCCCTGAAATTCCTTCTTCAGAATAATGATGTGGTAGTGATGACTGCTATGATTCTCGTCAACGCACTGAAAGCTACGGAAAAAGGGAATCGAGTGGAATTGCGAGACATCAGCTTGTTGTTGTTTGATGAATGTCATCATGCTCATAAAGAACACCCCTACAACAGCATCATGGAGATGTATTTGGCTCTTAAGTCTCAGGCTGGACATCAGCAAAGACTACCACAGATTGTTGGTTTAACGGCATCCCTTGGTACAGGGAAAGCGAAGAGTGCTGAAAAAGCTAAGGAGCACATTATTCTTGTTTCTGCAAACTTGGACGCCGAAGAAATTTCAACTGTCCAGGAGAACCGAGAAGAACTGGAACAATACGTCAACTTGCCTAGTAAAGAACAGTATTTTGTGCCCAAGGACGAGCAAGATCCATTCGAAAATATCATCTCTAAGGTGATGAAGAACATTGAGGCTCAAATAAACAAATTTAAAGGAAAATCAGGCAAGGATGCGCCCTCAGATAAGGCTGGTCAGCAGTATCGACAATGGGTGGAAGAAGTCTACAAAGATTCAGTGGCGAGAGGTGATCGCTATATGGTGACTTACGCTGAACACCTCCGAGAATACCACATCGCGCTGACTTTGAACTCAAACACACGCATGAAGAACGCTAGGGAGTATCTTACGAAGTACTTCGAAGCGTTAGACACAGAAAAATTCACTGAAACTGACAAGAACTTGAAAAAGCTCTTCTACAAAGCAATGGGCATATTGGACAAGCACATCGAAAAATATGGCGAACCTGAAAATCCACGTTTGCTGAAACTGCAAGAATTGCTGTTGGATAATTACAAAGACGTCGAACGCCAGCAAGATAACAAGGATGAATCGGGCAAAAAAGAGGGTGACGGTGGCAGTGAAACTGAGGGAAGAAGAGATCTGGTTGAGGAGAACGACAAGAGTTGCGCCCaagaacaggaggttgaaaatgagaaggtgaagaacgatgcagaaaagaaggaggaggacagagaaagagaagacgaagCGTGTGCAACAGTGTTAGCTGAGGACACCGAGAAATTGAACGGTGAAGTTTCAAAGGAAAATCCTTCATTGGAAAAGACAGAGGAATTGCCTCCTGAAGCCGCCAGAAGTGATCATGCCTCAACAAAGCCAGATGACAATCAGAATATCCTTGGTGAGAGTGAATTGGAAGACAGTTCTGCCAACGAAAAATCGGAAGTTAAAAGCGAGAAAGATGATGCGATGCCAGAACAAGAATCACAGAACAACGCGAGGAGCACCTCATCTGAAGGGACAGAAAATGACGAAGGTTCAAGTGAAAACGGCGCCCACCATCCAGAGTGGGATGGCGCTAAAGGCATCCTATTTACCCGAACTCGCGAGTCTACCATTGCCCTATTTGATTGGATCAACGAAACGGAGGAATTAAGCAACGTCCTCAGGCCCGAGCTGCTTGTTGGAAGTGGCGATGGAAACATCGGAATGACTCAGAAAGAGCAGGAAGGAGTCATCAAGCGATTTAAAACAGGCGAAAGGAATCTTCTGCTGGCGACCAGTGTGGCTGAAGAAGGATTGGATATAAGTGACTGTAACTACGTCATTCGATACGACATGATGGGGAATGAAATCTCATCGATGCAGTCAAGGGGACGTGTCAGGGCGAAAGATGGAAAGTACACAGTGTTGGTCAAAGAGGTACAACGAAAGATCAGCCAGGAACGGTTTCTCAAGAAACACGTACGTGCCGCACAGAAGTCTGTGGTTTTGGCCGATGACGTGAACTTCAAGTGTCGAAAGTGCAAAGAATTTGTTTGCCAGGCGCACGATGTTCGTCGTATCAAAGGCAGCCACCATGTTATTATAAATCGTGAATGCCGTGACACAAAGGTGGATATGAAAGAACATCGGAATCCTAAGAAAATCGATGACATTGAAATGAATAAGAAAATTTTTTGCAAGAAATGCCATGAAGATTGGGGAGTCACAGCGCTTATTTATAACGTTGAATGGTTGTGCATCAAGATCAGCAGCTTCGTATTGGAATTCCCGGGGAGAGATACCACGAGGATGTACAAAAAGTGGAAGGATCTGCCGTTTGCTATCCAAGAAGCCGACGAAGAGGAGATTCTACGGCATGGTGCTGACAATTCCGAGGCAACGGATCTGTTCGACCTGGAATCTTGAGGGGGCTTAAAACGCGAGTTTTTCAGAAAGCTCTATTAATATTTTATGGGAAGAAAATAGCCTAtaaccctttcctacccaaagggtttcccattgacgagtaaaatcgcctggcgttagtgagagtaaaatctataagtgccaattgcactcatgagcaggaaagggataaGCAATTCTTTCGAAATTAGCGGCTTTTAAGCGTTTTGAACCTGTAGCAGCATTGCCCATTGCAATGAATGGCTCATTTAGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95786	Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Q9BYX4	Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001752 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11648 all species →	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF18119 all species →	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR021673 all species →	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041204 all species →	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0096.g62.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.