Gene detail

Detailed information of amic_s0097.g11.t1 in Acropora microphthalma

Genomic Location: sc0000097_pilon:157000...162005
NR annotation: XP_029201195.2, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0097.g11.t1

CTAGAGACCTTTGTATTGACTGGTGCAATGCCCAAGCAGACGGTAATTGCGTTCTCTTACTCCCACCCGCCTTCATTCCATTATCACCTGAATCATTATCATCATCGTCCTTATCGTAGTCGTCCTCATCAATGCCTGAATTTCATTCCCCAAATCGGTGCTTGTATTTCTTGGAACATTCTTATCCCAACGTCCTCAAACTCAGAGTCTGTGGATTTAGCTATGGTACTTCCCAAAGTCCGCTTTCGTAGTTAAGTCTGTTTTTCTTTCCAACTGAATCCACGATATACTCTTTAAGCCAATCACTTCAGCTTGACCACGCATCGCATATTTCTTGGATCTTTCTGAAATCTTGTGTTCACTGTATGACGCTGCAGCGGTTTTATCAAACGCCTATTGCATCCCACAAACTCAAACCGACTTTAAAATGTTCCAGTCAACTAAATTATTCAGACTTATTCCACTCTAAGACTTCACCGAATATCTTTTTTGGTCACGCAACCATGAAAGGATTGCGTGACAAACTACGAAAAGGAGATAGGCGACAATCGGAAAGGGCTGAAATATGCCTCTTCCTACGACCGTAATCGGTAGTTTTCCGAAACCCACGTACCTGGAAATTCCGGACTGGTTTCGGACCTCTCATTCAGGATCATTTACTGAACAGTATAACCGCTACTTGGAGAGATTGAGCAAGTTCGATAGAGAGTCCACGATCAGGAAAGCAAGCAAAGAAATAATTGATGTACAAACGAAAGCAGGGGTGGATATAATTACTGATGGAGAGGTTCGCCGGGAATCCTACATTCTTCACTTCTGTAGAGCGCTTCATGGCTTAGATTTTTGCAAGTTGTTTTCCAAAATGTGTCGCGATGGAGCAGTGAAAACAGACGTGCCGCGGGTTATTGGTAAAGTGGCAGCGAAAGAGAGCGAACCGTGGGTTTGGAAGGAGTGGAAGATCTCTCAAGATTTATCTATTTTACCTATAAAAATAACTCTTCCCGGGCCTATGACAATTATAAACTCCATCGAGGATCAATTCTATGGTGACGATAAAGTCCTTGGCAGTATTCTGACGAAGATAATAAACAATGAACTGAGGGGCCTGGTATCTGCTGGATGTAAACATATTCAGGTAGATGAACCTGTGTTAATGCGCTATCCAGATCAGGCTCTTGAGTATGGTATTGAACAACTTTCATCTTGTTTTAATGGTGTGTCTGCACCAGATGTGGTCAAAACTGTTCATTTGTGCTGTGGATACCCCAATTATTTAGATGAAGTGGGCTACAAAAAAGCAGATAAGGATGCATATGTTTTGCTTGCTGACAGACTTGACCAAGCAGGATTTGATCAAATATCTATTGAAGATGCCCACAGGCACAATGATTTGTCATTGTTTCAACAGTTCAAGAAGAGCAAGATTGTACTAGGTTCTGTTCAGATTGCTTGCAGTCGAGTGGAGAGCGTGGAAGAAATTCGGACTCGTCTTCAACAAGTTTTAACTGTTTTGCCTGCGGATCGATTGATTGTTGCACCTGATTGTGGTTTGGGATTCCTTCCCACAAAAATTGCAAAGGAAAAACTTCGTAATATGGTTGAGGCTGCCAAATCCTTACCCTGAGACATTGCTGTGATGTGGACTCCAATAGTTTGGATTTTAGAGTGCGTTCAGCTAACACGTGAAAAGGAAAGTGTTGATCCTCGGAGAAAAAAATTATTTAAGATGGTCAGTTTTAGAATTTAATTTAATGTTCCCAGACGATCGAACTCCGTCGAGGATTATATTGAGTTGATAGTTGAAGGTATTTGGACAGGTATATCAGCTTAATGGTAGGAATATTCAGACTCTCCATGAGTGTGCTTGTATAGAAGGTCAATATAAAGACAGGATAATTTTGCTTATTGACAAATAGGTCCATAATTACATGTGACGTCAAAATGTTTAGAAAGGGCAGTTTCTGTTGGGGAGACAGGAACTCAATATAACACTAGATTTGAATTTTACACGTTTGACACTGATTTTTACTTTGTTACGTGCTAGAATAACCAAGAGATGTCCGCGAACAAGACACAAATAAAAAGAACTCCGGAGCACGATATAAGGCACGCAATAAAAATGTAGCGACGAGCAGTTACCGTTTTTTATCATTATTTAATTAGTTTTACACAGTTACATTTACTAAGATTAAAGATTAAGTTAAGCAGTTCTTAAAGCAAAGCAGGCTTACTGTCTTTCAGGGCCACAACAGGTAACGATTAACTTCAACTTCCAAGTTCCACTGACTGGAGACAACAATTATTCTGAATTTCTTGATTCGTTGGACTCTTTCCACTCTCTGGATTTTCTGTGTAAACAAATTCTTGCAGAGGACTTCAGAATATCTTTGActtccttgtcttcttctcttctcggctatcgtctctttcttctctCCAGATATCGCAAGGTCAGGTTATCGCTTCTTCATCACAGTATCACACCCATCAGTCACCGTGACAGCCGGCCACGAGGCTTTTATACTTttaagcctcatttacactagcaagttttccatgacaagttttcctgggcagtgtaaatggaaaaatataccaagtacccttgt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q975N4	Methionine synthase OS=Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) OX=273063 GN=metE PE=3 SV=1
Q4JAI4	Methionine synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=metE PE=3 SV=1
Q980A9	Methionine synthase OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=metE PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002759 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01717 all species →	Meth_synt_2	Cobalamin-independent synthase, Catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002629 all species →	Domain	Cobalamin-independent methionine synthase MetE, C-terminal/archaeal	Interproscan
IPR038071 all species →	Homologous_superfamily	UROD/MetE-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30519 all species →	5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003871 all species →	Molecular Function	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00549	metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	EC:2.1.1.14	Selenocompound metabolism	ko00450	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.