Gene detail

Detailed information of amic_s0097.g23.t1 in Acropora microphthalma

Genomic Location: sc0000097_pilon:284576...289031
NR annotation: XP_029201203.1, cyclin-J-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0097.g23.t1

CTAAATCTCGCGCGTTCAATCGCTTGCATTTTACACAGAAAGTGCAACTTTGTTGATCCGAGGTGAAATGTTTGGCACCTTGAAACGTTGAACTTAAAATACAGCAATCAACCTCCGAGGAGAGCTCTCTTGGAGCATTTGCCTGCAAAATGATGGTGGAAAGCGAGTGGTGGAAATCGCCATTGGTGTTGGAAATTCATGATGTTCTCAGAGAAAAGGAGATGAAACTTCCACCGTTCACGTCGTCCTCGCCACAGTTGAAGTTAAGGCGTTTTCTCGTCGACTGGCTCGCTGTTATTTCTGAGAAGCTCAAAGCTTCCCATGGAGTACTTCATTTAGCAGTTTATTACATGGACTACTTTATGGACAAATTTGATATCCAGGAACCTCAACTTCATCTTGTCGCGTTATCGTGTTTGCTCCTTGCAGCAAAGTTCGAGGAAAACGAGGAAAAGATTCCTACTATACACACACTGAACAGCTTTGTGCATCATGTATTTAGCACTGCAGAGTTTCATCAAATGGAGCTACTTCTATTAAACTTTTTCTGCTGGAATTTGGACTTACCAACCCCTGTGAATTTTATGGAGTATTACTTGGTGCATGCAATTTCACCGCAGGACTGTCAGTCTGGCAAAAGTAAAGAGGACTGTTCCAAACCAATGACTTATACAAGAAAATATGTGCATTATTTTCTGGAGATTGCTTTACAGGATCATTCTTTCATGAAGTTTCCTCCTTCAGTAATAACATCAGCAGCAGTTGCTGCGTCAAGATTGCGTCTTCATCTCTGCCCAACTTGGACACCTCATTTAATTAAGGTAACATCCTACACGTGGGAAAAGATTGCACCTTGTGTCAGCATAATGTTGAGAGCACATGATGCCGATGAAAATGCTATGTTAGAGCAGAAGGCTACCAATACCAAAGGATGAACAAAACATGTCAACCACTAGGAACTATTATTGAATCAAATACCAGGAGTGGACAAATAATATGTATCACTATAATGACTGCAAGTTCTCAAGACTGCTCCAATCTCAATCTCCAGTGTTCTTGAACTGAAATTCAAGAACAATGGAGATTTATTGAGCTGCCTTCATGACTCAGACGTTAATGAAACAAGTTGGTTATCCATGGACCTGACAACATTAACAAAGTATCATTTTGTTTCTCGTTATCAGCTAAGAGGTGAATTGTCTTGTTCCTGGCGTCTCTTTGTAACGTATTCAAAACATGTAAAATGGAGTGGTgttatgctagggcactttccaatagtcagaactgactggttagatcagccagttcacaaacagtgagtgtcagtagctgctgaactgagagctgttGGTCACAAGCAGGTTTCTCAGTTTGGCAGATTACCACACATTCCATTACTTTTGCAGACTGGCCCTTTCACTTGGCCAGTTCTGACAAAATTGATGGAAAGTGCCACCAGGAAATAGAAAATAATTTGAACAATGTGAAGGCTGAATGTGTAATATCAAAAGTCTTGTATTGAATACCTAACAAATACATCAATAGATCTAGGAAAAAATTCAATATTTCAAGGCACGATACAAAATGAAATGACAGTTATAGTGCTTTGAGTATTTTCTATTTAACTGGTAATTATTTAAAAGTAATTTCACTAGGAAAGAAATTAATGATTTATCAATGTCAGCTCCAAAGGTGCTCAATACACTTGGGTGCTTTTAGTATGTGACAAAAGATTGCTTTATTTACTTTGAGTATCTTAGAAAGCACCAGAAGGCACAAGTCAATAGAAGTGATGACTTCTCCGGTTATACTACATCTACTTTCTTGAGACAAGCACAAAATAATAATTCAAGTTGCATATATTTGGGTTAAAAAAAAAAGCAAAACATTTCCCAAATCTTGAAACAAAAACTTAATGCCAATTATTTATTTGCAGTTTCAAAGATCAAAAGTGATCTCTTGTGGAACAAACGGAGAGAAACAATCTTTAGAAGGACTAAAAGTATTAAACCTATTTCTGGTCCATACCTTACTATTACAACTATTAATCGCCTTACAAAACACAACTTTACCAATTTCTTGATATCACTGACtaataatagtaataattattattaaagttaattatCTCTCATTAGGATTACAAAAATAGGTTTTGGATGCAAAAGAAATAATTAATTCTAATCCTTGCAGCCACGCAAGTAAGGCTACAGTAATAATTGTCATTGTATCAATTTGATGTTATCTGCATGTAAAGTTGGCAACACTTTGCATATTTGGACTCCATTATAGTGGCAATTAAATATGAAATAAAAATTACAGTGGTATCTGAATTTCCTGTTTGCAGATATTTCAGTCTTTATCCCTTTCTCAGAGCAAATGGATAGGCTTTCACTCTGACAAAGGGCTAACAGTTATAAGGCATGCTTTTCATCTTTTACAAGAGTCAGTTTGCAAATTTTGTTTACCACTGACAAAGCATCACTGGGTGAGTTTCTTTAGAAGCTTCTCGCCTTTGCCGGGTTTTGTGCAACTTGGCCAGGTCATTTAGTAATTGGATGTTTCCCTGGAAAAATAACTGACTCTGATCAGGTGACAATATTTTGACTACATCATAAAAGTAAAAAAGGCTATCATTATGGCAATGCAAGATCTTCTGGAGACCTTTCTTTTGTTTGACCAGAAAGATGACCTATTTACACAAAAGGATGCGACAAGGCGACAAGACTACCCCCCTTGGAAGGCCTCTAACCTGTATGGCAGATGCTCAAAAGGGAAGAGGAGGTGAAAGAGAACAAATTTGGGAAACTATGAAAAAGCAAGAAAGGCACTCTTCTTCTCCTTGTGCTCCCTTCTCAAGCTCTCAAAATCGTTTTTGTAACTCATAATAAAGAAACTTGATAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFJ9	Cyclin-J OS=Xenopus laevis OX=8355 GN=ccnj PE=2 SV=1
Q3TZI6	Cyclin-J OS=Mus musculus OX=10090 GN=Ccnj PE=2 SV=2
Q5T5M9	Cyclin-J OS=Homo sapiens OX=9606 GN=CCNJ PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008453 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00134 all species →	Cyclin_N	Cyclin, N-terminal domain	Domain	Interproscan
PF02984 all species →	Cyclin_C	Cyclin, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046965 all species →	Family	Cyclin A/B-like	Interproscan
IPR006671 all species →	Domain	Cyclin, N-terminal	Interproscan
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR004367 all species →	Domain	Cyclin, C-terminal domain	Interproscan
IPR039361 all species →	Family	Cyclin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10177 all species →	CYCLINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016538 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0044772 all species →	Biological Process	mitotic cell cycle phase transition	Interproscan
GO:0000079 all species →	Biological Process	regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0097.g23.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.