Gene detail

Detailed information of amic_s0097.g55.t1 in Acropora microphthalma

Genomic Location: sc0000097_pilon:930559...943802
NR annotation: XP_029206383.2, antiviral innate immune response receptor RIG-I-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0097.g55.t1

ATGGCTGTTGTGCTTTCCGAGCCAACATGGACTGAGCTTCTTGATGAGCGGACTCCACATCTAATGAAGGAATTAGTACCAAGCAAATTACTGCCACATTTGAATTTACCTGAAAGCGATAAAGAAAAAATCATATGCGATGAGCAACGCGAAGGCCAAAGACAAGCTTCCTTGAGTTTATTGGAAAAGTTAAAGAAGCGTAGCGGAGGGAATGGAAAGAAAACATATGACAGATTCGTAAGAGCGCTCAGAAATGAAGGACTCCAGCAATCCGCTTTGCTCCTGGACCCACACTTTAAAGTGTCATCGACCTTGGAAGCATTGCAAGATGAAAACAGCTCTCGGCTTGGCATTCTCGGCACAGCAGCAGAAATTGGCATCAGAATCCGTCTCTTGAAAGAGGAGCCAGATGTGAAATATTACTCGAAGTTGGAGCAAAAACTCTTAGAAAAGTTCAAAGATGTTCGATCCGACAGTACCTTGGAATTACGCAATAAACTTCATCACGAATTGCCAGAAGGTGCGGCATTTTCAGCGGTTTTTAAAGAAACCAGAGATGGTTTACCGGCTTGTAAACTGCGCGTGTCTCAGAAGTCAGCTGCTGACAAAATATGGGATGATTACGGGAGCGGCAGGCTGATGATGATTTTGAAGTCGCATTTGTTGGAAGGGCTGGTTCCAGAAGCTGGACACAATGTCACCATGAAAATTAACATCATGAAAGAAGAGTACGAGACGGCATGTGATATCTTAGCTGAAAAACTCGAAGGTGTCTCAACAGACGAAAATCAGAAAGTCAAGAAATATCGGATTCCACCAGTATTTCTGGGAAAAAAGGCAGAATTCAAACCTCGAAATTATCAAGTGGAGCTTGCCCGCCCCGCCAAAGCTGGAAACAACACGGTTATTTGTGCACCAACGAACAGTGGAAAGACTTATGTGGCGATTGCAATAACAAAAACGTACTTGACTAAGCCGCCCGATGGCAAGGACGACAAGGGAATGACTGCTGTATCTGCTCTTGTGCATCCTCGCAAGCCAGTGTTGTTTATTGTCAACAAAGTTAATTTAGTTTTGCAGCAGAGACAACGCTTTGATTACTACTTATCTGATAGATACGATATAACCGATATATCAGGAGCCAATGCGCAAGACAAAACACTGGATGAGATCATTAGAGAGAACGATATAATTGTTCTAACTGCGCAGATCCTGGTGGACGCATTGAAGTCAAAACGTGTCAAGATTACAGACTTCTGTTTACTAATATTTGACGAATGTCATCACACCAACAATAAACATCCATACAACGAAATCATGCTCGCCTACCTGGCGATAAAGTTTCCTGTTGACGGTAATCGAGCACAGGCCGCGAAAAAAGAAAATCTTCCACAGATCATTGGTTTAACTGCTTCATTGGGAGTTGGGAAAGCTCGGAACAATGCTGATGCGCAGAATCACATCCTTCAGCTGTGTGCAAACCTTGACTGCTCTATCCTTTCAACAGTGCAGCAACACATCAAGGAATTAGAAGAGATGACTGGGACGTGTGAGCGGGCTTGCCTGGAAGTGTTCGATGGAAACAAAGATTACTTTGACAACATAATCGAGGCCGTTATGATCAGAATTGAGCGGATGATACCACAAAGTAGTCCACCAACAATGTGCCGAAGCAGTCAACAGTACCAGCAATGGCTGAAGATCATGGAAAGCAACACACTGAGAAATAGAGAGCAGTTCACTTTGATTCAACATTTGTTGATATATCACACTGCTTTAGCCATCAAAAAAAGTTGCCGAGTTGCAGACGCTTTGAAATACATGCAAAGTTTTCACCAAAGGCAAAGACAAGACAAGTTCACCGATATTGATCACACATTACGACAAGTTTACACCACGACCAAGAAGGACTTAAACGAAATGAACCAAAAACACGGTGAAATAAAGAATCCTAAACTAGAGGCCGTTGCTGACTTGCTGAAGCAAAAATACGACGCCTGCGTGGAAAAAGGCGGTCAAAAGACAGCTAAAGGAATGCTGTTTACTAAAACACGTGAGAACACCAAGGCGCTGAAAGCATGGCTGGATGAAAATCCAGATCTGTCTTTTATAAAGGCAGAGAGACTTGTTGGTACTGGCAAAGGGGAAGATGGAATGACACAGCGTCAGCAGGAAGAAGTAATTTCAAATTTCCGCATAGGCAACATAAACTTGTTAGTGGCTACTTCAGTCGCGGAAGAGGGTATAGACATTCCTGACTGTAAATTTGTCATCAGATATGACGTATGCGGTAATGAAATTGGTGGCGTGCAGTCCCGCGGGCGCGTGCGAGACAAAGAGGGAAAATACGAGGTGGTGGCTGGGAAAGAAAGCGGAGTCATCGAAAAAGAGAATTTAAATTTACTCAGAGAGGAAATGATGCAAGATGCCATTAAAGAGGTCAAAGGAATGGATAAGGATTTGTACAAAGAGAAGGTTTTACAGCTTCAGATGCGAGCAGTACAACAGCGACAAAATGAAGAGAGCAGTAGGCGATCAGCAAAAGACAAGCAACAGAAGAGTAAAGTCAAACTGTTTTGTAAGAAGTGCAGTGAGTTTGCATGCAGCGGAGACTACATTCGATGCATAAAGGAAGCCCATCACGTAGTCATCGATAAAGCTTTCCTCTCAAAATTTTCTTTCAAGAGGAACAAGTGTCCCCAAAGCATCAATGGAGTTGAGCTCACAGGGCCAATACACTGTCAAGCTTGTGATAAAGAATGGGGTGTTATGTTGAGGTACCAATCACTTGAGAAACCTTGCATTAAAGCTTCCTCTTTTGCCTTTGAAATTGAAGACGAGACTGGTGGAAAGAGTACATCTTGTCCTAAAAAGTGGAAAGATACAAAATTTCACGTTCAAGCCTTTGATCTTTACAAGGACCAAGCTCAAGAATGTATATCCTGGATGGACTTATCTGAGCTTTCCCTAGATTAA

Transcript

amic_s0097.g55.t1

CTTTCCCAGTTCTTTCCTTGAATAAGAAAATGAAATGCTTATGGTATTATTTCCGAGAAACGTAATTTCTAAAAAAAGAGCTGAGTGGAGTATTTATCTGACAAGAGGCTGTGTTATCTGTTGGCGAGTGATTCGCAATGGCTGTTGTGCTTTCCGAGCCAACATGGACTGAGCTTCTTGATGAGCGGACTCCACATCTAATGAAGGAATTAGTACCAAGCAAATTACTGCCACATTTGAATTTACCTGAAAGCGATAAAGAAAAAATCATATGCGATGAGCAACGCGAAGGCCAAAGACAAGCTTCCTTGAGTTTATTGGAAAAGTTAAAGAAGCGTAGCGGAGGGAATGGAAAGAAAACATATGACAGATTCGTAAGAGCGCTCAGAAATGAAGGACTCCAGCAATCCGCTTTGCTCCTGGACCCACACTTTAAAGTGTCATCGACCTTGGAAGCATTGCAAGATGAAAACAGCTCTCGGCTTGGCATTCTCGGCACAGCAGCAGAAATTGGCATCAGAATCCGTCTCTTGAAAGAGGAGCCAGATGTGAAATATTACTCGAAGTTGGAGCAAAAACTCTTAGAAAAGTTCAAAGATGTTCGATCCGACAGTACCTTGGAATTACGCAATAAACTTCATCACGAATTGCCAGAAGGTGCGGCATTTTCAGCGGTTTTTAAAGAAACCAGAGATGGTTTACCGGCTTGTAAACTGCGCGTGTCTCAGAAGTCAGCTGCTGACAAAATATGGGATGATTACGGGAGCGGCAGGCTGATGATGATTTTGAAGTCGCATTTGTTGGAAGGGCTGGTTCCAGAAGCTGGACACAATGTCACCATGAAAATTAACATCATGAAAGAAGAGTACGAGACGGCATGTGATATCTTAGCTGAAAAACTCGAAGGTGTCTCAACAGACGAAAATCAGAAAGTCAAGAAATATCGGATTCCACCAGTATTTCTGGGAAAAAAGGCAGAATTCAAACCTCGAAATTATCAAGTGGAGCTTGCCCGCCCCGCCAAAGCTGGAAACAACACGGTTATTTGTGCACCAACGAACAGTGGAAAGACTTATGTGGCGATTGCAATAACAAAAACGTACTTGACTAAGCCGCCCGATGGCAAGGACGACAAGGGAATGACTGCTGTATCTGCTCTTGTGCATCCTCGCAAGCCAGTGTTGTTTATTGTCAACAAAGTTAATTTAGTTTTGCAGCAGAGACAACGCTTTGATTACTACTTATCTGATAGATACGATATAACCGATATATCAGGAGCCAATGCGCAAGACAAAACACTGGATGAGATCATTAGAGAGAACGATATAATTGTTCTAACTGCGCAGATCCTGGTGGACGCATTGAAGTCAAAACGTGTCAAGATTACAGACTTCTGTTTACTAATATTTGACGAATGTCATCACACCAACAATAAACATCCATACAACGAAATCATGCTCGCCTACCTGGCGATAAAGTTTCCTGTTGACGGTAATCGAGCACAGGCCGCGAAAAAAGAAAATCTTCCACAGATCATTGGTTTAACTGCTTCATTGGGAGTTGGGAAAGCTCGGAACAATGCTGATGCGCAGAATCACATCCTTCAGCTGTGTGCAAACCTTGACTGCTCTATCCTTTCAACAGTGCAGCAACACATCAAGGAATTAGAAGAGATGACTGGGACGTGTGAGCGGGCTTGCCTGGAAGTGTTCGATGGAAACAAAGATTACTTTGACAACATAATCGAGGCCGTTATGATCAGAATTGAGCGGATGATACCACAAAGTAGTCCACCAACAATGTGCCGAAGCAGTCAACAGTACCAGCAATGGCTGAAGATCATGGAAAGCAACACACTGAGAAATAGAGAGCAGTTCACTTTGATTCAACATTTGTTGATATATCACACTGCTTTAGCCATCAAAAAAAGTTGCCGAGTTGCAGACGCTTTGAAATACATGCAAAGTTTTCACCAAAGGCAAAGACAAGACAAGTTCACCGATATTGATCACACATTACGACAAGTTTACACCACGACCAAGAAGGACTTAAACGAAATGAACCAAAAACACGGTGAAATAAAGAATCCTAAACTAGAGGCCGTTGCTGACTTGCTGAAGCAAAAATACGACGCCTGCGTGGAAAAAGGCGGTCAAAAGACAGCTAAAGGAATGCTGTTTACTAAAACACGTGAGAACACCAAGGCGCTGAAAGCATGGCTGGATGAAAATCCAGATCTGTCTTTTATAAAGGCAGAGAGACTTGTTGGTACTGGCAAAGGGGAAGATGGAATGACACAGCGTCAGCAGGAAGAAGTAATTTCAAATTTCCGCATAGGCAACATAAACTTGTTAGTGGCTACTTCAGTCGCGGAAGAGGGTATAGACATTCCTGACTGTAAATTTGTCATCAGATATGACGTATGCGGTAATGAAATTGGTGGCGTGCAGTCCCGCGGGCGCGTGCGAGACAAAGAGGGAAAATACGAGGTGGTGGCTGGGAAAGAAAGCGGAGTCATCGAAAAAGAGAATTTAAATTTACTCAGAGAGGAAATGATGCAAGATGCCATTAAAGAGGTCAAAGGAATGGATAAGGATTTGTACAAAGAGAAGGTTTTACAGCTTCAGATGCGAGCAGTACAACAGCGACAAAATGAAGAGAGCAGTAGGCGATCAGCAAAAGACAAGCAACAGAAGAGTAAAGTCAAACTGTTTTGTAAGAAGTGCAGTGAGTTTGCATGCAGCGGAGACTACATTCGATGCATAAAGGAAGCCCATCACGTAGTCATCGATAAAGCTTTCCTCTCAAAATTTTCTTTCAAGAGGAACAAGTGTCCCCAAAGCATCAATGGAGTTGAGCTCACAGGGCCAATACACTGTCAAGCTTGTGATAAAGAATGGGGTGTTATGTTGAGGTACCAATCACTTGAGAAACCTTGCATTAAAGCTTCCTCTTTTGCCTTTGAAATTGAAGACGAGACTGGTGGAAAGAGTACATCTTGTCCTAAAAAGTGGAAAGATACAAAATTTCACGTTCAAGCCTTTGATCTTTACAAGGACCAAGCTCAAGAATGTATATCCTGGATGGACTTATCTGAGCTTTCCCTAGATTAACGACATGGATTTATTACTGAACGAGGACTGTTGTTGTTGTTATTTCGTTCAGCGTATCTGAAAAACTTTCAATTTTTTCCAAAATATTATTGAAGTTGATGTAGCCTAAGCGACGAAATCAGGACTTgcccagaagccaagggagaggtcctgggaacgatgttgaAGAGACTCACTACGTGCTCTAACCATTGAATGGAAACCATTAATTTCAAGGAGACCGCGAGAAAGCAGTCAAGGACAAACCATAATAATATGATATTGGTGGAAATGGGGGGGGAGGAGGGTAGGGAGACTGTGTCATTATATTTTGTCCTTGATGTCCTCACTGCATGATGTTATTTCATCTTGCGTTATTGTGATTGGACGTTCCGAGAGAATAATtaggctgatttagcaagacaaggggaacttcacttgacgacggcgcgcgcagagcaaatacccaaatatggtcaaattagaacagaatccagactattcctcgcgcccccttgtcgtcatctgacgttgccgtcctgttgctaaatcagcctaatAACTAGTCATTTGAGATATGGAAGCATAGAAAAATTGAAATTACTTGAGATACTGAGCTTAGAGGCACTCTTCTTATTTCGCTTGTGGTAAAAACCTGAGCAATTTCTTCATATACTTTTTCTTACACTAGGAAGCCCTCAGTGGACGAAAGGTTAGCCCCTTATGTCCCTTGCATATTGGTGTCTATACTTACTCAGAACTAAGGAATTTGAAATCTTGCAGGGCTATTTTAACACTTTTGCTGAATTCACCTTTTAGTTTGTTGATTCTTCGCGACTTCTTCACTTCTTCGATTTACCGTGAATTTGTTGTTTTGGCAAGGAAATGCACGAAATTCCGAGATGACGAATCAAAAATGAAACACTTCTTGGACCAAAAAGGAAACCAGATTAGACGTACAATTTACTTTTTAGGCGATGTTGTCATTTTCAATCGATTTGTATTAGTTAGTTTGTTTTTTTTTTGGAATTATTACCTTACTTCATATTTATGTTGATGTTACTTAATGAAAATCGTGCCTCTTAATGTCTTTTGTATTAGGGTACATAGAACTATTAAAACGAAATCGATAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95786	Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Q9GLV6	Antiviral innate immune response receptor RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001752 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF11648 all species →	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF18119 all species →	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR021673 all species →	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR041204 all species →	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12646	RIGI, DDX58; ATP-dependent RNA helicase DDX58	EC:5.6.2.6	Pattern recognition receptors	ko04054	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.