Gene detail

Detailed information of amic_s0097.g8.t1 in Acropora microphthalma

Genomic Location: sc0000097_pilon:119112...132125
NR annotation: XP_022784688.1, homeobox protein Hox-D4a-like [Stylophora pistillata]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0097.g8.t1

GAAATAAAACCAGCATAGATAGACCAAACCGTCGCGAATCAGTTTTTCACATCAAAGCGTATTTCATTTGTTTTCGCATCATGAGAAGAACCTTGCTTAATTTGAGGAAATGTGGCAACATTGTGCAACTCTGAAAGACACGACCGAAATACGCAGACCTCATTCTCGCTGTAAAATGCTCGTAAACATGTAAAGCCACGGAAAAGTTGCGGTTTTGATGAAAAAAGTCAGAGGCACGTAGCACGATTCGTCAACAAATAAGAGCAGAATTCACCATAGGATTGTCTTGGAATCGGAGAAGTAATCGTAGGTTTAGGCGAAGTGATACTGAATTGATCGAATAGGCACCACTTCTTTACCCCCATCCGTAAACGGACAGACTATGTTCCTTGAGTGGCTTTTCTCGCTGGACGCGCAAGGATGACGACGGGTGCAATGCAGTCAAATTATCCCTATTTTGGCAGTAACCTACCAAAGGAGTCCGGTTCGCATGGACAGCAGTTGGATTTTCCTTACTCTCCTTGCCGTATGCAGTCACCAAATTACTATAATCAGTCGGCACTTCCAAATTTCATGCCACCCATGCCGCAGGGAAACCTCGGGCAAGTCAATGGGTATGCCAACGAACCACCCGCGTATGGTAACGTGCCGATTTCAGCCCAAAATGGAGGCTCGCTCCCAATTGATCATCAAAATTACTATTCGCCTCAAGATGCAGGTCACAATTGTTCGTTCCATCAATATGCCTGGCTTAAAAGTACTTCTTCTCCGGAAAATTGGTGGCAAAATTCGACGACTGCAGGAACCCCAGCGTGGAATGGCAGAGGATCAGAAGGCAAACGCAAGAGAACAGCGTACACTCGCAAGCAGCTACTGGAATTAGAAAAAGAATTCCATTTTAATCACTTTCTTACCAAAGAAAGAAGAGCTGAGATGGCATCACAGCTAAATCTCACCGAGAGGCAAGTTAAAATCTGGTTCCAAAACCGAAGAATGAAATGGAAGAAGACAAATTCACAAGCAATGACCAAGAGCGCTAAGTCTACTTCAAGTTCTCAAAATTCAAACGCAACTGGAGTACAAGACCTTCATATTCCTAACCCCGTATCACAACCATTGAACACTACGCCTATAAACTCTCAAGCATCCCTGGACAACTCTCCCGTTCCCAGTTGTTTAGGCTACAGGAATCATCAGAGTTAAGATATTAGAATTTCTCACGTGCACCGGCTTAGCTATCCGTTCACAATTCATGATCGAAATTTATTCCAGAAGTCAACTGCATTTAAATGCTAATGTAAAGAAAATTTTCCTCGATCCTAAGAAAGAGATTTTTATTCAGAGATGCAATTTTATCAATTTGATTTTTCAGATGTATTTACCTAAAAATGAATGATTATTTAGTGTCGAAGGTTGACTTCCTTCAGCCTCTCGTAAACTCGCTATCGACTCGCTATTCTTCCTGGTGGGTGAGATCACGAAATACCACGCTTCTCTGTACATAGAATGAAATTGTAAAGTGAAATGAGCTGTAAATAGAACTTCCGTTAGACAGACTTTCCGTTTTATTTTGAGATTTTCAAAAATTCTGACATGACTCAAGTGAAGAGGTTTTCCCGTGTACGAAGGGACTTCAACAACTACACTATATTTATGCTAGAATGATCCCAAGAAAGGGAATGCTGTTATTTACGTCCCAAAAGTTTCAATTCGCTCGCTTAAAAGATCAACACATTTATTTAATTCCCAAACTCTATCAATTTTAGTCATACTTTAGTATGTCATTCGAAACAAATTTTGTGTATGTTGTGTAGGTTCAATAAAATTTTCAGTGTCAATATTTGCCAAGCAATTAGAGTGGAGACAACATGAATTTACAGAAGTAGTGCTTATAAAAAAATCGATATACTCGGCGACATATTAGAGAAGCAATACTAGTTAGGATAGTCGTAAGTTTGGCTACAAATTTTTAATTGCTTAAAAGAACTGCGCGAGAATATCTTTTATCAAAACAGAAAAGCCTCGAATATATAAACTGTACAGCAGGTAACATGTCCATCAAGTTTATATTAGGCAGCAGGGAGAACTTTTTGTATAGTGCTTGAGTAGTAAGTTTCTAGCGGTTCTCCCCGGTGTGCATCATTCGATCTATTTACCTCATTTTTTACGCTCGCGATTCATTTAGACAGCCGCCTGACAGGTGCAAGGAGACTCGAGTAACTTAACCAATTCACAATTTAAATGTACCGGTTGACTTTGACGCCAAGATGTGATTCAGAATTTTTTTCGACACTAGGCAAGACATCCTACTGTGCAATTTCCTTCATTCGAAGATCCAGCGAAAAATCGTAGATTGACATCGAAGGGCCCTCAAATTTTGCTTGATCAAGGCTTATTGCCAAGTTGAAAAATTATCAACAACACTCAACAGGTTCGACCGTATTTACATACTGTTCACTTTCACGGACTTATGTTGCCATGTTTCGACCAAAGTTTACAATAAACAATTATCTATGAGTCAATACCAGACTGAATAGCCGATGCCACACAAAATATACCGTTAGAAGCGATGAACGAATATCATCAAAGAAAGGTTGATTTTACCATTAGAAAGTTTAAATAATACAGCCGTTTTCCCAAGCCAAGAAAATTCTGCTCTGTTCCATGATAGACGATATTGAAAACGCTGTCACATGCTAGGGCAAGTGCTTAAAAACTGCAGCGTCAAGTTGGCGTTCCTCAAGGACCACAAATACAGCGCTATCAATAGCTGACAGTCCAGCGCCTTGCAATACTAAGTTCTGCTGTCTGGTAGAATCTGTGGCGCTTCGTCGACTGATATAATCTCCTTGTGTATCTCTCGGCCGTTATTTCATGTTTCATTGAACTAACCCACCTTTATTGCCCTTCAGTTCACACCGCTAAGACCAATCCAAGCTCTAAGTAACCATCTCATATATAGATGGGGAAACCAGGGCACTGTTCGTTGGATAAAAACGGCTGTTTCCATTTGGACTTGAAACGTTACAAGTTCGGTGGTGGACAGTCTTTTCACAAACTAAAGTTTGAGCACATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P81192	Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=187800 GN=HOXA4 PE=3 SV=1
P10628	Homeobox protein Hox-D4 OS=Mus musculus OX=10090 GN=Hoxd4 PE=1 SV=3
P14838	Homeobox protein Hox-B5 (Fragment) OS=Gallus gallus OX=9031 GN=HOXB5 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000082 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000047 all species →	Conserved_site	Helix-turn-helix motif	Interproscan
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050296 all species →	Family	Antennapedia-type homeobox	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45659 all species →	HOMEOBOX PROTEIN HOX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009952 all species →	Biological Process	anterior/posterior pattern specification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0097.g8.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.