Gene detail

Detailed information of amic_s0098.g46.t1 in Acropora microphthalma

Genomic Location: sc0000098_pilon:886736...911122
NR annotation: XP_044176884.1, alpha-mannosidase 2C1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0098.g46.t1

ATGATAGACTCCTACAGAACCAGAGGGAATTCAGTTAATGAATTAAGCAATCATCCTGATAGTGTCGCaagtaaACTCTACCCAAAGAAACTGCCAGTGAACTCAATTACTCACTATGCTGCTCCTGGAAGAATCAGATACAATGAGGCCATCAGGGGCAAGTTTGTGGAGACTCAAGTTGGGCACTGTTTTGGTCCAACGTGGTCAACACATTGGTTCAAAGTTGACTTCCATATTCCAGAGGAATGGAGAGGGGAAGAAGTGCATTTTCGGTGGAACTCTTCATCAGAGGCGATGGTGTGGCAAGATGGAAAACCAAGACAGGGTTTAACAGGTGGCGACGGTCATCAACAGAGAACCGATTATGTTCTTTCAACTGATGCTACTCCAGGCAGATATACATTGTACGTGGAAATGGCGGCTAATGGTATGTTTGGTGCGGGAAAAGATGGCCTGATAAACGCACCAGACCCCGCGCGTGAGTACACGCTTACTATGGCTGAAGTAGCCGTGTTTGATGCTGCATGTTATCAGGTGTTGATGGATCTCACTGTTGTCATAGATTTGGCCAAGAATCTGTCTCATGAGAACCCCAGAGCGTTTCAAGCTCTTTACACTGCAAATGATATTGTCAATGCTTGCCAGGATTTGTCAGACAGAACAGCATTCAAAAGCTGGAGTTTAATCAATAAATTCCCGTTTCACACTTTCAAGTGGGAAGGAATTGATGGATCAAGGTGTCTGGCGCACTTTCCTCCTGCTGATACTTATGAATCTCGTGGGGATGCGGCTGATGTCCTGAAGACAGTCAAACAGCTGAAAGACAAAGGACAAGTTCACGCCAGCATGCTACTGTATGGCCACGGGGATGGCGGAGGGGGACCTTCGGAAAAAATGCTTGAAATGTTGCAGCGAATGGAGGATGTTGATGGCTGCCCGAGAGTAAAACTTTCCAGCCCTCAAAACTTCTTCACCTCCGTTGAATCACGTGATGCTGAGAAACTGTGCACTTGGGTGGGTGAGCTGTACCTGGAGTTACATCAAGGAACATACACGACGCAGGCGCGGATTAAGCAGATGAATCGTCAAAGTGAACTTCTTCTTCATGACGCTGAACTGTTGGCGGCCCTGGCATTTATTGTAGGCGATAAAAATCCCGATTATTATCCATCTGAGGAATTTCATAGAATCTGGAAGCTTTTGCTGTTAAACCAGTTTCATGACATTTTACCCGGGAGCTGTATAAAGCAGGCTGTTGACGACGCTCTCTCTAGCTACAATGACGTACTAAGAAGTAGCCGGCGAATTGCTGATGAAAGCTGTGGCAGGCTTATTTCGGAGCTCAATTCCGGAAAGAAGGATTGCGCAATGAAGCCTTTGCTCGTAAACACCCTCAGCTGGCCGAGAACTGAAGTTGTCGCGATTCCTTATGAGCTTTGGGAACTGCTATCCATTTCAGAAAGATCGTCGATGAATAAGCAAAGCTCAAACGAAGGAAAAATGCTGGTTATAGCCTCTGTTCCAAGCATGGGTATCAGTAACTTAATTCACTCACAGATTCAACCGGTTGCGCCAGTGTTTCTCTCATTTGACAAGATGGAAGGATCCGTTATTTTGGAGAATGCCCTTTTGAGAGTCGAAATAGTTAGAGGGGGTCTGGTACGAAGTCTTATTCACAAGGCCAGCGGCAGGGAAACCTTTAAAGTTGGTTATTCCGGCAATCAGTTTATCCTGTTTGACGACATGCCGCTTTTTTGGGATGCTTGGGACGTGATGCCATATTACCTGGAATCAAGGAAACTGTTGCTGCCCACATCTTCTGAAGAATTTAAAGTCCTTGAAGAAGGACCTCTCCGTGCCTCAGTCGAGTTTTCTGCAAGAATCAGCGAGAAGAGCAGTCTCAAACAAGTTATTTCCTTAGATGCTGATGTCCCGTATGTTAAATTTCACACCAAGGTTGACTGGCATGAGAATCGCAAGTTTCTCAAGGTGGAATTTCCATTCGATGTTCGAACGATGAATGCTACATACGAGATTCAATTTGGTCATCTGCAACGGCCAACTCACTGTAACACTACATGGGACTGGGCCAAGTACGAGGTTTGTGGTCACAAATGGGCGGACCTGTCCGAGCACGATTGGGGCGTGGCCCTCATGACCGACTGCAAATACGGTTACTCCACTCACAACAACGTTATGTACATCTCACTGCTTCGTTCTTCCAAAGCCCCAGACGAAGAAGCAGATATGGGTTCTCACGAATTTTCATACGCGGTGCTTCCTCACTCAGGCACCATTCAAAGTTCAGGCGTTATTCGACATGCGTATAATTTTAACCAGCCGATTTCTGTGGTGTCCAGGGAAGTGTGTTCAGATTTCAATAGTAAGTCTTTCTTTAATATCAGCAATCCTGCCGTGATACTAGAGACAATAAAGAAGGCCGATAATGTGGCGGCAGCAGTGGTTGTTCGACTGTATGAGGCATTTGGAGGTCAAGCTCATGCCAAGCTTTCCTCTTCTCTTCCCATCAAGAAAGTCAAAATGTGTAATCTTTTGGAGATCCCGGAAGATGATCAAGATATTACGTGGTCTTCTGGTCACGTGGAACTAACTTTCCGGCCATTTCAAATATCGACACTTCTACTGTACTTTTAA

Transcript

amic_s0098.g46.t1

CGCGGACGGAGCTGTTTTTAGAGTAGTTTTGGTTCGTATGATAGACTCCTACAGAACCAGAGGGAATTCAGTTAATGAATTAAGCAATCATCCTGATAGTGTCGCaagtaaACTCTACCCAAAGAAACTGCCAGTGAACTCAATTACTCACTATGCTGCTCCTGGAAGAATCAGATACAATGAGGCCATCAGGGGCAAGTTTGTGGAGACTCAAGTTGGGCACTGTTTTGGTCCAACGTGGTCAACACATTGGTTCAAAGTTGACTTCCATATTCCAGAGGAATGGAGAGGGGAAGAAGTGCATTTTCGGTGGAACTCTTCATCAGAGGCGATGGTGTGGCAAGATGGAAAACCAAGACAGGGTTTAACAGGTGGCGACGGTCATCAACAGAGAACCGATTATGTTCTTTCAACTGATGCTACTCCAGGCAGATATACATTGTACGTGGAAATGGCGGCTAATGGTATGTTTGGTGCGGGAAAAGATGGCCTGATAAACGCACCAGACCCCGCGCGTGAGTACACGCTTACTATGGCTGAAGTAGCCGTGTTTGATGCTGCATGTTATCAGGTGTTGATGGATCTCACTGTTGTCATAGATTTGGCCAAGAATCTGTCTCATGAGAACCCCAGAGCGTTTCAAGCTCTTTACACTGCAAATGATATTGTCAATGCTTGCCAGGATTTGTCAGACAGAACAGCATTCAAAAGCTGGAGTTTAATCAATAAATTCCCGTTTCACACTTTCAAGTGGGAAGGAATTGATGGATCAAGGTGTCTGGCGCACTTTCCTCCTGCTGATACTTATGAATCTCGTGGGGATGCGGCTGATGTCCTGAAGACAGTCAAACAGCTGAAAGACAAAGGACAAGTTCACGCCAGCATGCTACTGTATGGCCACGGGGATGGCGGAGGGGGACCTTCGGAAAAAATGCTTGAAATGTTGCAGCGAATGGAGGATGTTGATGGCTGCCCGAGAGTAAAACTTTCCAGCCCTCAAAACTTCTTCACCTCCGTTGAATCACGTGATGCTGAGAAACTGTGCACTTGGGTGGGTGAGCTGTACCTGGAGTTACATCAAGGAACATACACGACGCAGGCGCGGATTAAGCAGATGAATCGTCAAAGTGAACTTCTTCTTCATGACGCTGAACTGTTGGCGGCCCTGGCATTTATTGTAGGCGATAAAAATCCCGATTATTATCCATCTGAGGAATTTCATAGAATCTGGAAGCTTTTGCTGTTAAACCAGTTTCATGACATTTTACCCGGGAGCTGTATAAAGCAGGCTGTTGACGACGCTCTCTCTAGCTACAATGACGTACTAAGAAGTAGCCGGCGAATTGCTGATGAAAGCTGTGGCAGGCTTATTTCGGAGCTCAATTCCGGAAAGAAGGATTGCGCAATGAAGCCTTTGCTCGTAAACACCCTCAGCTGGCCGAGAACTGAAGTTGTCGCGATTCCTTATGAGCTTTGGGAACTGCTATCCATTTCAGAAAGATCGTCGATGAATAAGCAAAGCTCAAACGAAGGAAAAATGCTGGTTATAGCCTCTGTTCCAAGCATGGGTATCAGTAACTTAATTCACTCACAGATTCAACCGGTTGCGCCAGTGTTTCTCTCATTTGACAAGATGGAAGGATCCGTTATTTTGGAGAATGCCCTTTTGAGAGTCGAAATAGTTAGAGGGGGTCTGGTACGAAGTCTTATTCACAAGGCCAGCGGCAGGGAAACCTTTAAAGTTGGTTATTCCGGCAATCAGTTTATCCTGTTTGACGACATGCCGCTTTTTTGGGATGCTTGGGACGTGATGCCATATTACCTGGAATCAAGGAAACTGTTGCTGCCCACATCTTCTGAAGAATTTAAAGTCCTTGAAGAAGGACCTCTCCGTGCCTCAGTCGAGTTTTCTGCAAGAATCAGCGAGAAGAGCAGTCTCAAACAAGTTATTTCCTTAGATGCTGATGTCCCGTATGTTAAATTTCACACCAAGGTTGACTGGCATGAGAATCGCAAGTTTCTCAAGGTGGAATTTCCATTCGATGTTCGAACGATGAATGCTACATACGAGATTCAATTTGGTCATCTGCAACGGCCAACTCACTGTAACACTACATGGGACTGGGCCAAGTACGAGGTTTGTGGTCACAAATGGGCGGACCTGTCCGAGCACGATTGGGGCGTGGCCCTCATGACCGACTGCAAATACGGTTACTCCACTCACAACAACGTTATGTACATCTCACTGCTTCGTTCTTCCAAAGCCCCAGACGAAGAAGCAGATATGGGTTCTCACGAATTTTCATACGCGGTGCTTCCTCACTCAGGCACCATTCAAAGTTCAGGCGTTATTCGACATGCGTATAATTTTAACCAGCCGATTTCTGTGGTGTCCAGGGAAGTGTGTTCAGATTTCAATAGTAAGTCTTTCTTTAATATCAGCAATCCTGCCGTGATACTAGAGACAATAAAGAAGGCCGATAATGTGGCGGCAGCAGTGGTTGTTCGACTGTATGAGGCATTTGGAGGTCAAGCTCATGCCAAGCTTTCCTCTTCTCTTCCCATCAAGAAAGTCAAAATGTGTAATCTTTTGGAGATCCCGGAAGATGATCAAGATATTACGTGGTCTTCTGGTCACGTGGAACTAACTTTCCGGCCATTTCAAATATCGACACTTCTACTGTACTTTTAATGCACTGTGCCAGTTTCCAGTCCAGTACCAAACTCTGAAACTAAAGGCTTCTTTGGCCATCAATTTTGGACCGACTGACACATGATTGTGAGTAACACAAGTCTTACCTTACATTCTTCGAATCCTCAGCGTGTCCATCGGGAAAATTTTTCTTTTATCACCTGAACTAATGATGTTGGAGAAGACGGGGTATCATAACACGTATCTGTAAGATAAAAGATAACGGCCGATCACATGCTGCTTCAGTCAGACGGTTCTCGAAAATATTTTTTCTACTTATGTAACTGAAACCACTCTATGAGTAAAACAAAGAAATCACAGTACCCCCCACGAATAGTTAAACAGCGTGCGTTTCGTTTCATATTCGAATCATTAATTAAAGGTGTCCTAATTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NTJ4	Alpha-mannosidase 2C1 OS=Homo sapiens OX=9606 GN=MAN2C1 PE=1 SV=1
Q91W89	Alpha-mannosidase 2C1 OS=Mus musculus OX=10090 GN=Man2c1 PE=1 SV=1
P21139	Alpha-mannosidase 2C1 OS=Rattus norvegicus OX=10116 GN=Man2c1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003387 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09261 all species →	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan
PF07748 all species →	Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	Domain	Interproscan
PF01074 all species →	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan
PF17677 all species →	Glyco_hydro38C2	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037094 all species →	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR028995 all species →	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR015341 all species →	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR011682 all species →	Domain	Glycosyl hydrolase family 38, C-terminal	Interproscan
IPR027291 all species →	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR000602 all species →	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan
IPR041147 all species →	Domain	Glycosyl hydrolases family 38, C-terminal beta sandwich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46017 all species →	ALPHA-MANNOSIDASE 2C1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0009313 all species →	Biological Process	oligosaccharide catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01191	MAN2C1; alpha-mannosidase	EC:3.2.1.24	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.