Gene detail

Detailed information of amic_s0098.g54.t1 in Acropora microphthalma

Genomic Location: sc0000098_pilon:1246568...1251461
NR annotation: XP_029203404.2, uncharacterized protein LOC114967534 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0098.g54.t1

ATTGTTTCTTCCAGTTTCGATTAGTTAAAGTCGATCGCTACACTTGGAGGTAAAGAGTCAATCGATATTAAGTTTCTCAACTCGATTGAAGACCCAATGGCTGCACTGGAAAAGAAAGGTTGGCAAGACGAACTTCAGAGTTATCTCCCACATTCATTGAACTGCGTGGATCCAAACTGCCTAAATCCTATTTGTGTTAACCTGAAGCTAATCTTGAGACATGTACCGAACTGCGATAAGCGAGGCGACCTGTGCTCCATTTGCCAAAGAATGAAATCACTTGCAGCCAATCACGCAAATTCCTGCCGCGACTACTACTGCCGTGTACCTTTCTGTTGGGAAGCCAAGGTAGCCGCAGAACAACAGAAACTCATCGATGAACTAATGACCACCCTTCCTGACCTTGAGGAAAGTCATCCTGGTGGAAAAGAAGCTGAACAAACATGCGCTACTGTTGTCACCTGTAGAAAGACCGAGAATGATTCTTCTCTCAGGCCTAGACTTGAAGAAAGACAAGGTGAAACCTCAGCTGGTAACTACATGAATTATGGTGGAGATGGCCCTTCTGGGAAAGTGCAGCTTCGGCACTGTAACATCACTTCTACCCCGCCTGTCTCTATTGGTAAAACAGTTCCTCCTGAGTGGACGGGTGATTGCCAACCCACTACTGGTGCCTGTGACAATTTGATGTCACCTTCTTCCCAAGCACTTCCACAGCAAGCCTTGCCAATAGAGGAAAGAAACTTAATTGGATCCTCTAAAAAAGCAGAAAATTTTCAAAGGCCGCCATGTCAACAAGGAACAAAAAGGAAGCTAAAGAGTTTTGTCTCCATCAATAGAGCGACAAAATTTCGACGCTCCAGTCCTGAGGAGGAGGCAGCCGAAATTGATGATTCCGCTGAAATAATCGAAATTTTTAGCAGCAAGTTCTCTGGAAAGTCAACCTCAAAACAAAAGAGTGAAACTACGATGTCATCTCGTCCATTGTCATCCTTTGTTAGAAACACAGAGTCAGATGGTTCAACCCCGATATCCAAGTTTACCAAACCGCCCAGAAAAAATTCAACTCGGGATGACAGCTCCGATTTGCCCAGAACTGATTTTCAAGCATGCACAAGGCCTAAGTCCATTGCCGCTCCGGATTCCGACAGCTTGTTCCCGACCCCTCCGCCGTCTCCGCCATTTGAGATGTGGTTCGGTGAGCCAGCGAGCACCAATGAAAGTGTACTAAAATCTGTCCTACTGGACACTCTGTTTCAACTGCTTGGCATCGTGACGCAACCAAAAACAAGGAACCAGGAAGCCATTTTCGTCGATTTGCTAGAACGCACTCTCCGTGCAATGAAACGAGAGTTACAAGGAAATAACAAAGGCTCTCAGTGATatcagggagcttaagctgccacgacgacgacggcgacggcgacaggaacgtcagacatttacgtatttaacaatgaaaaaaaaaaacagtacttttgcacgctttgtacgtgcatttctcatttttgaacatttcgcggccgctctcgtcctgatttgcaattgtggtcgacgtgagctcttgaccacaaatttttatatcgtttttcttatttcaattttattctaggatagtttgcacacatttttcaagtcaaacgacttcgaataatcgagaaattattgcagaaaagggaagttagactttcagatgatgttctcgctTTCCTTCTCTAGGCCCTTACTTAATCCCCCAAAACTTACATCCAGATCAATTCTCATTACACCTTTTGGTTTGGTGTGGCTTATCCATGGTGAATGTCCAATATATTACGTATCAATGATCCCACAAAGGAGCTTGGAGTATAGAACTTCTTTTTGTCACATTCAATTGATCTTAGTAACCGTTAGTGCATAGCACACGAACTGAGATAAGTAAGCGTTCTTTTTATAAAAGACTACAGAGTACGTCCATTGGGCCAAAATAAAGTTATTAAGTTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008816 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02135 all species →	zf-TAZ	TAZ zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035898 all species →	Homologous_superfamily	TAZ domain superfamily	Interproscan
IPR000197 all species →	Domain	Zinc finger, TAZ-type	Interproscan
IPR013178 all species →	Family	Histone acetyltransferase Rtt109/CBP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13808 all species →	CBP/P300-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0098.g54.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.