Gene detail

Detailed information of amic_s0098.g66.t1 in Acropora microphthalma

Genomic Location: sc0000098_pilon:1427550...1444436
NR annotation: XP_044176908.1, LOW QUALITY PROTEIN: motile sperm domain-containing protein 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0098.g66.t1

ATCTTGTGATACTAAACATGGCGGACGAGAATGTTATAGAAAAACAACTTATCAATGAGCTCAGGCAGCGATTTTTTCAGGAAAATGGCACTAATCTGCACGAATTTCACGAGCAAGATTTGAAGAGAGTTCGCGATGATGACGTTTGGCTGAGTCGCTTCTTGAAATCTCGAAAACAAGATGTTTATAACGCTCTGCTCGCTTTGGTGCCTTGTTTGTTATGGAGGAAGTCATTTGGAGTGAATGATCTTACAGAGAGATCAATAGATCGTCGACTGTTTGAGTCAGGCTTCTTATTTCAGCATAATCAAGATAAAGAAGGGAACAGCATGGTTATCTTTACTGGAAAGCTTTACAAGAAAGATCCTCAGCAACAACAAGAAATAAAACGATATTTAGTATTTCTATTGGAAAAACATGTAAGATTGTTTCCCAATCGGAAAATAACCATGATTATGGACATGCAAGAGACTGGCATTTCACAAATGGACATGGATTTTGTAAAATGTGTGATACACTGTTTCAGAGATCATTTCCCTTGGACATTAGCCTGGCTGCTAATTGTAGATTTACCCTGGATTTTCTTAGCTGCTTGGAAAATTGTGAATACATGGCTAAGTCCGGATGCTGTAAATAAAATCAGATTCTTAAACAAAGCTGACCTTGCTGACATTGTTGACCAAGACAAACTCCTTCAAAGATTAGGTGGAACGGATAATTACGAATACTCGTACCCACCGAGCAAAGATCCTCTGACTGAAAGAGTTGGGATAGACGGTGTAGAAGAAGTGCCAACGTCAAATGGATTTTCACATGAAAATCAGGATTCCgatgatgatgatgatgatgatgatgatgatgataatgaAAAGACTGAATTAGCTGAGAATCAGCCTCAATCACAAATTTCTGAGGAAAGAGAAGCACCTGTCAGTCCAACAAAGAGAGTGACTTTCGAAGACGTGCCCTCAACAGCAATAACAACCAATAACAAACAGCGGGAGAGTTCCACCAAGCCTTCCACTCGATTGACTACTCAGTCAAGACTGTCTCAAAAACGCGCTCCTCCAGATGGTTTTCTCAGCAAACCCATGTTACTAACTATCACTCCCCCAGAAGAGTTGTTGTTTAGCGGAACAACTTCAACTGGAGAAATTCTTCAATCTCTATCACTCGCAAACAACACTTCATCAACAGTTGCATTCAAGGTTAAAACAACTTCCCCGGAGAGTTATCGTGTACGGCCGAGTTCAGGGGTCATTCCCGCCTCTTCGTCTGCCACGGTCAACGTCTTTTTACAACCAGGGCATGCTGCGAGTGTTATTAGGGACAAATTTCTGGTGATGTCGACCGAGTTACAGGACCAGAAATCACCAAGCGAACTGGCAGCGTTGTGGAAGACGGTACCCAAGACAGATGTGATTGAGCACAGACTCAGATGCAGATTTGTGGCGTCCAGTTCTCAGATTTCTAGTCAGTATTATGATATTGCTGAAGGGAAGCCGATTTCCTTAGGTACAATCAACGACAGCATTGAAACACTTCAAATACAACTCTGCGATGTCGAGAAAAAGCTCGACGTTACGAATAAAAGAATTATCCACATGGAAGAAGGTCTCCGCGTTTTTATCAAAGTTCAATTGGGTCTGTTTTCTGCCCTGATAGTTTTATTTGCTGTTGTTATGTACTTTGCAATTCACCCGATGTAAAAGATCATGAACTGTCACAAGAAGGCAATTTTTCAACCAGAAGACTTCTACTTTGAATTGAAAATGCTCCGTTTTCAAGAAAACGCCATCTGATTGGTTAGTTATTAATGCCCACCCGTGCAAAATTCGGCCAGACGTACAATGTATTTTGGAGCTCCGTTTCTTCGTTTCTCGGGCTGTTTTGCTTTTCGAAGCATCGTTCACTAACAAATCTTCCTTACGCAATAATTCAGTGCGCTTATTTTGTAGAAAGTTAAGTTTTTAGGTTTTTCATAAGTAGTGAGTTTCATAAGAATTAGTCCAGAAATGCCTGGAATTTGATGCACTCGTAACTTTGATAAACGTTTCGAAGTGTCCTTTGAAAAGTAAGAGCGCTCTCGTTGGTCGAATAGGTCATTCCGAAAGTATGACGTGTCATTTCCGATAAATGAGCGAACTGCTTCTAACCAAACTAACTCACACCCTTAGTATTTCCAGAGTATATTTCGCTTTGTCATGGTCTTACTCGCACTTTTCTTAAAACGGAGAGTTACAGTTGCTGAATGGCCGGTCCGGGCGGCCAGTTCTGATTAATAAGAGCCTAATCTCAGTTTTTATCACAGGACTAGGATTTTATTAGGATCAATTTTTTTAGCCCAGGATTGGCGTCCCGCCTATTATTGattaaggagtttaataagctacgacggtaaccgcgacgaaaacgtcacattaaaattgaactttgcgttaggttaaatgttttgcggttattccatgttgggcacgttgtgcaaaataggcgaagtgcactttcgcttgcttgggacgaatgttttccatgtatatgcacagaatgaaagatttactgctgcgagctcgcgtcgtcgtcagaacctcaaatatgaaaatttcaagttgtcgtttggcaaaatacgtcaaagcattgctccaaaaagtgtgcagcaggtgaagcacgattatttttccacattcaaccaatcaaaccattgatttgtggtgttttcgttgccgttgccgtcgtcaaatcttaaactctgtattgtcgtcgaagaagtagagttagatactttgacctttactgTCTGTTAAGTCGAAGATTTACAGGATACTTCATCACGCTTATTGAAGTCTTCATTCATCtaatagacctttctcgcttgtcggtcttgttttgcctatacagatgcatgtgaggatacctagaagcgttgaacctttgtcgtgtattttaaaaggactacgtgcgagcatgaaaattgtcaactttgaaagaaaacactcccctgggtatcgccatatgaactgtattgcgaaattaaaattggcacgcgaaaaaggtcTGTTGCTTGCATTTCTGGAGATATAGTGTCTCTTGACTGTTACTCTACGCACTACCGCTTGCAAAAGCGAAATGAGATGACCCCAAAATATTTTAGAGGCAGTTCTCTAGAAGGATGCAAGAAATAAATTTGAAAGAAGTAAGGAAAATCGCCGAATGATAGACGATGCGTGGgttaagaatttctggtcattatcatcctgacccaagctgttcaaaggttgaagaatgctatctaacggatgggtcaTTTTACATTGGATAATTACAACCATTGAATCCATTGAGACAtcaataggccatttccgacttaccttcgacctcgttttcaaagatgagtgccaggactcgctttgaaaacgaggccaaaggtaaGGGCCAATTTCATAGTGATCTATCCAAGGTTTAGTGTGATTCACCCGTTGAACTACTGGGAAACTGTTATTTAACATATTACAAAACGAAATCAGAAGTGAACAACAACACAAAACTATCTCTATCATGTAGGATTTTCAAATACAAATTATGGAGTGAAAATTAATATTGCTGATCTCAACTGTAGGAACCCTTTCTTTTTTCTCTAGCAAAATCTATTGAGTTATTCAGAAAGTGTCGATTTATCCTATCCGCTCTTTGAACAACTGGAGTTAAGTTAATGAGCTTTAAAAAGTTTATTTGAAAATTGTATTTTTGAAAAATAAATTATTATTGTGCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CWP6	Motile sperm domain-containing protein 2 OS=Mus musculus OX=10090 GN=Mospd2 PE=1 SV=2
Q8NHP6	Motile sperm domain-containing protein 2 OS=Homo sapiens OX=9606 GN=MOSPD2 PE=1 SV=1
Q10484	Vesicle-associated membrane protein-associated protein scs22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=scs22 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003758 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00635 all species →	Motile_Sperm	MSP (Major sperm protein) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000535 all species →	Domain	Major sperm protein (MSP) domain	Interproscan
IPR053012 all species →	Family	Endoplasmic reticulum-organelle contact domain-containing protein	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008962 all species →	Homologous_superfamily	PapD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46384 all species →	MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0140284 all species →	Cellular Component	endoplasmic reticulum-endosome membrane contact site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0098.g66.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.