Gene detail

Detailed information of amic_s0099.g102.t1 in Acropora microphthalma

Genomic Location: sc0000099_pilon:1529829...1533813
NR annotation: XP_015756569.1, PREDICTED: 60S ribosomal protein L27-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61356	Large ribosomal subunit protein eL27 OS=Bos taurus OX=9913 GN=RPL27 PE=2 SV=2
P61357	Large ribosomal subunit protein eL27 OS=Cervus nippon OX=9863 GN=RPL27 PE=2 SV=2
P61355	Large ribosomal subunit protein eL27 OS=Gallus gallus OX=9031 GN=RPL27 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007597 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00467 all species →	KOW	KOW motif	Family	Interproscan
PF01777 all species →	Ribosomal_L27e	Ribosomal L27e protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001141 all species →	Family	Large ribosomal subunit protein eL27	Interproscan
IPR005824 all species →	Domain	KOW	Interproscan
IPR018262 all species →	Conserved_site	Large ribosomal subunit protein eL27, conserved site	Interproscan
IPR038655 all species →	Homologous_superfamily	Large ribosomal subunit protein eL27 superfamily	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR041991 all species →	Domain	Large ribosomal subunit protein eL27, KOW domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10497 all species →	60S RIBOSOMAL PROTEIN L27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02901	RP-L27e, RPL27; large subunit ribosomal protein L27e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.