Gene detail

Detailed information of amic_s0099.g125.t2 in Acropora microphthalma

Genomic Location: sc0000099_pilon:1676550...1684088
NR annotation: XP_029190458.2, uncharacterized protein LOC114957260 isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0099.g125.t2

ATGTCGAGGTGGCAAAAAATCTCATCTCTTGTTCAAAAAAGGACTTTTGCAACCATTTTGCAGCGAACAAGTTACACTTTTACACCCGACAAAGATGAAGTGATTGAGTCACGATTTCGGCTGCGTTACAGCACCACATGCAACAGCTACTACAGGGATTGGATGAACACAATAGATCCATCATCAAAGGGAGTGATTCCTGGATGGGAGAAGGCTCTTTACTCCGTGGACAACGTGCACAGATACATAAATGAGGAAACTGGACAGGTTTACCTTGACAAAGTTCCTGGCTCCAGCACTGGCTGCATCAAATGGCGAATGGATTTTGGTTGTAGTGGTTTGCTCGTTGATGAGGTCACCATGCGTTTGAAATGCGTGGAAGACTATGGAGGAGAAATTATGATAACACTCATGGGAAGTCCAGGTCATAAACGTCTGCGATATGCAATAGGAAGTGACTATGTGACATACACAGAGCTAGAGAACTCACCCGAGTTGGTGCTGACAATTCATTTTGTTGGCGATGCAGACCAGGTTACACAGCTATTCCCACAAAACATCCTGCGCGATATGGGGTATCCGCTGGACATACAGGTTACACTGAAGGCGCCTTTCCAGTCACTAGGCTACCCCAGAATCCTCGTCGGTGTTATGTACAGCAGCTCACAAGAGACTGAAGTGGATGTCCGGCATTACAAGGAAAACACAAGCCAACAGTCTGGCCGAGGATTTCTGCATATTCATCTCTATAGAGGACGAGATTTACCCCAAGAAAATAACAGACTACCAGACACGTTCACAAAATGTTATTTACTGCCAGATGCCAAGAAAACTACTAAATGCAAAACAAGAACTCGCAAAGGAAAGGATCCTTATTGGGATGAACAGTTTCTAGTCGTCGACATTAATTATCATGAAATAAAACGACGAGCGCTAGAGATATACGTCGGCGACAGCAACACAGCGGTCGGAAAGAGGGCGAAGTTCATCGGAGGCCTTCGACTCAGTCTCGGATACAATGCAGTCGTGAGTGCCCAGACGAAAAAAGTGAACCAAGTTCTTCATTTACTGAAGGGAAAGGGTGGGCAAATCTCAAACAGTAAAGCTGAAACAGGCGAGGGAACGGATGGTCACATGAAAGTGCCTCAACTAGGAAAACTAAACACTACTGGCCCGAAATGGAGGGGGACTAGTTTTGCGAGAAAGGTTATTGAAAGCACGAAGGAAAAATCAAATGAACAAGAAGATGAGGAAGCAAACTGCAACGTGAAAGAAACAAATATCTCAAAAGATGGTGACGTGGTAGATACTCGCGAGAGGCCGTCCTCTTTGAAAAACAAGTATGACATTCACGTAACAGGGACAGATAAAGCTAAGAATAATCAACTAGGACGTTTGTCGTCTACTCTGAGTACCGAAGAACAAACGTTGGCCAGCCATTTAGACCACGAAAGAAGTCCGAATGCAAAACCGGAGAAAGATCTGAAGATTATTAATGACAAGGATGTCAAAGAAAAAGCTGTTGTAGAAAACTGTGAGACACAAGTATCATGCAGTAATCCAGTTCTCGACAAAGAGGAAATCTCTGAAGTAAAGTCTGCTCTGAAACGATTAAGTGAGGAAGGAAAAGATAATGCAGACGGAGAGAGTGAAATCGAAAATGAAGCTCTCAACAGTCAATTACCTACGTCGAACACAAAAAAAGTAGGTGAATTTTGCGAAACAGCTGACGAAGTCAATTCGAATTCAAAGTCAGATGAAAATCTGAGTCCAGACGTAAAGCATCATAACGTCGAGTTGAAAAACTCTAAGATACAAATATCAAGGGCAGGTCCTGCAGAGGGTCAACAACAAAATTCACAAACTCAACCGAGCGCAAAAGATCAATCTGAGATGACAGAGTTGGAGAAAAGTTCACGTAAACAGCAACTTGAGACAAGCAACGAGGACTTGAACATAGATGATGGAGAAAGCTGCAGGACACAAACAACAATGAGTGATAAAAGCAATGGCACACAAGTGATCGCTGAGGTTTGCAACAAAGTAGAATCTACTGAGAAGGAAGGTTCTGAAAACCATTCATTCCACCACCAACAACAACTAGAATCACTTTCTCAATCAGTAGGAAGCCTCACTGAACAGCTTTCGCATGTTGCACGCTTTAACATAGGAGATGACAAAGATAGAACAACAGATAGCTTCGATTCCCTGACTAGCCTTTGGAAAGAAgacaattgcaatgacatgaacacttgcaatgacactgaAGACCTGGAGATGGGATTAACTATCATTAACTGTCAGTTAGAAAACAGTAAGGATGAACCAATGGAATTGGATCAAAATGAGAGATTCATAAATGAAACGAAAATTGAGACACCTGTAAATTGCGACGTTGAGAACAATTTCAACGAATTAAAAACCGGAACAGATGAAAGCAGCATTGACAGAAACCGAAAAAGAGAAGCAAAGTTATCGAATTTAAGCGAGAATTCCAATCCAGAAAACGAGCAAAGAGTGGAGAAGCAAAATGGCTTTGAAACCAATGTGTTGAAATCCGAGAGTTTAGCTCCGGTGGAAACCGAGAAAAAAAAATCAACTGCTAAGCAATGCTCTTAA

Transcript

amic_s0099.g125.t2

CCCGGACCTTCCTCAACAACAACCCTTCAATGATTCACAAAGTACTCTGTTCATATACAGCTCGTATCAGCTCTCTTAATACTTCATTTCTGTTTATCTTTTCTGTATAAGTTCTTAAGAAATGGTTTTGAGGTTGACACTGCTTTCTGCTCCTCCATGACGTGTGATATTTGGACAGTGCTATTGAAGTTGTCTGACTTACAAGTGTGGTATCCGTGACTTAAGGGAGCAGTATGTCGAGGTGGCAAAAAATCTCATCTCTTGTTCAAAAAAGGACTTTTGCAACCATTTTGCAGCGAACAAGTTACACTTTTACACCCGACAAAGATGAAGTGATTGAGTCACGATTTCGGCTGCGTTACAGCACCACATGCAACAGCTACTACAGGGATTGGATGAACACAATAGATCCATCATCAAAGGGAGTGATTCCTGGATGGGAGAAGGCTCTTTACTCCGTGGACAACGTGCACAGATACATAAATGAGGAAACTGGACAGGTTTACCTTGACAAAGTTCCTGGCTCCAGCACTGGCTGCATCAAATGGCGAATGGATTTTGGTTGTAGTGGTTTGCTCGTTGATGAGGTCACCATGCGTTTGAAATGCGTGGAAGACTATGGAGGAGAAATTATGATAACACTCATGGGAAGTCCAGGTCATAAACGTCTGCGATATGCAATAGGAAGTGACTATGTGACATACACAGAGCTAGAGAACTCACCCGAGTTGGTGCTGACAATTCATTTTGTTGGCGATGCAGACCAGGTTACACAGCTATTCCCACAAAACATCCTGCGCGATATGGGGTATCCGCTGGACATACAGGTTACACTGAAGGCGCCTTTCCAGTCACTAGGCTACCCCAGAATCCTCGTCGGTGTTATGTACAGCAGCTCACAAGAGACTGAAGTGGATGTCCGGCATTACAAGGAAAACACAAGCCAACAGTCTGGCCGAGGATTTCTGCATATTCATCTCTATAGAGGACGAGATTTACCCCAAGAAAATAACAGACTACCAGACACGTTCACAAAATGTTATTTACTGCCAGATGCCAAGAAAACTACTAAATGCAAAACAAGAACTCGCAAAGGAAAGGATCCTTATTGGGATGAACAGTTTCTAGTCGTCGACATTAATTATCATGAAATAAAACGACGAGCGCTAGAGATATACGTCGGCGACAGCAACACAGCGGTCGGAAAGAGGGCGAAGTTCATCGGAGGCCTTCGACTCAGTCTCGGATACAATGCAGTCGTGAGTGCCCAGACGAAAAAAGTGAACCAAGTTCTTCATTTACTGAAGGGAAAGGGTGGGCAAATCTCAAACAGTAAAGCTGAAACAGGCGAGGGAACGGATGGTCACATGAAAGTGCCTCAACTAGGAAAACTAAACACTACTGGCCCGAAATGGAGGGGGACTAGTTTTGCGAGAAAGGTTATTGAAAGCACGAAGGAAAAATCAAATGAACAAGAAGATGAGGAAGCAAACTGCAACGTGAAAGAAACAAATATCTCAAAAGATGGTGACGTGGTAGATACTCGCGAGAGGCCGTCCTCTTTGAAAAACAAGTATGACATTCACGTAACAGGGACAGATAAAGCTAAGAATAATCAACTAGGACGTTTGTCGTCTACTCTGAGTACCGAAGAACAAACGTTGGCCAGCCATTTAGACCACGAAAGAAGTCCGAATGCAAAACCGGAGAAAGATCTGAAGATTATTAATGACAAGGATGTCAAAGAAAAAGCTGTTGTAGAAAACTGTGAGACACAAGTATCATGCAGTAATCCAGTTCTCGACAAAGAGGAAATCTCTGAAGTAAAGTCTGCTCTGAAACGATTAAGTGAGGAAGGAAAAGATAATGCAGACGGAGAGAGTGAAATCGAAAATGAAGCTCTCAACAGTCAATTACCTACGTCGAACACAAAAAAAGTAGGTGAATTTTGCGAAACAGCTGACGAAGTCAATTCGAATTCAAAGTCAGATGAAAATCTGAGTCCAGACGTAAAGCATCATAACGTCGAGTTGAAAAACTCTAAGATACAAATATCAAGGGCAGGTCCTGCAGAGGGTCAACAACAAAATTCACAAACTCAACCGAGCGCAAAAGATCAATCTGAGATGACAGAGTTGGAGAAAAGTTCACGTAAACAGCAACTTGAGACAAGCAACGAGGACTTGAACATAGATGATGGAGAAAGCTGCAGGACACAAACAACAATGAGTGATAAAAGCAATGGCACACAAGTGATCGCTGAGGTTTGCAACAAAGTAGAATCTACTGAGAAGGAAGGTTCTGAAAACCATTCATTCCACCACCAACAACAACTAGAATCACTTTCTCAATCAGTAGGAAGCCTCACTGAACAGCTTTCGCATGTTGCACGCTTTAACATAGGAGATGACAAAGATAGAACAACAGATAGCTTCGATTCCCTGACTAGCCTTTGGAAAGAAgacaattgcaatgacatgaacacttgcaatgacactgaAGACCTGGAGATGGGATTAACTATCATTAACTGTCAGTTAGAAAACAGTAAGGATGAACCAATGGAATTGGATCAAAATGAGAGATTCATAAATGAAACGAAAATTGAGACACCTGTAAATTGCGACGTTGAGAACAATTTCAACGAATTAAAAACCGGAACAGATGAAAGCAGCATTGACAGAAACCGAAAAAGAGAAGCAAAGTTATCGAATTTAAGCGAGAATTCCAATCCAGAAAACGAGCAAAGAGTGGAGAAGCAAAATGGCTTTGAAACCAATGTGTTGAAATCCGAGAGTTTAGCTCCGGTGGAAACCGAGAAAAAAAAATCAACTGCTAAGCAATGCTCTTAAGAGGAATAAGAAGCGTGAAGTAATGGAAACTATAAAAGGAGAGAAAACAATCGAAAGTCTATCTCTTCCAAAACAAGAGGAGGTCAAGCTAAAAAATGTAGAAAGCGAAAACGACACCGAACAAGCGGAAAACAAGAAGGCTTCTGGCGAATTACATGAAGTGAAACGAAGCCCTTCTGCCTCATTAAGAGACCTGGGTAAGAAGCTCAACTTTAAGCGGAAAAGCAAGTTAAATGAAGAAGAAGCCAAAGGAACTGGAAAGGACTTAGAGACTGGTGCCAACAAGATCATGTTAGATGCGCAGGGTCTGGAAATAACACAGTGGAACCTCATGGTCGAGCGACCAAAACGATGGCATTACTGTTGGCACATACTGAGATCTGAAATGACTCTCTTGCATTGAATACATTAAGGTCGTTCAGCGTGTAGCTTTCGAGTAGGATCGCCTGTTTCGTGCATCGCGCGAGAGTGTCGTGGAGGCAAAACATGCGAGGAGAAGCGTCCCATTCCTCTCTCGTCGCGCGCGATCACTCAAACCAACGAAACAACAAGACAGCATGTTTGTTATGAATGGCATCATTTCAGGTATAATAAAACTTGGTCATGTTCCATTCGAAAAAACTCGATTCGAACTGACAGTGTAGGTTTATAAACTCTCATTATCGGTTTTTCATTCCCTGTCCTTTAATTTTAGTGTCATTACTCTTTTACAAGACACAGAAAAGCAACAGAGAAAAGGAGGCCAGATGTGGCCCAGTAATAAACAAAAATTATAACA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004510 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04721 all species →	PAW	PNGase C-terminal domain, mannose-binding module PAW	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR038680 all species →	Homologous_superfamily	PAW domain superfamily	Interproscan
IPR006588 all species →	Domain	Peptide N glycanase, PAW domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45716 all species →	BITESIZE, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0099.g125.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.