Gene detail

Detailed information of amic_s0099.g144.t1 in Acropora microphthalma

Genomic Location: sc0000099_pilon:1886261...1891504
NR annotation: XP_029179449.1, zinc finger protein 2 homolog [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0099.g144.t1

CTTACATTCACTCAGTCTTGCGTTTCTACATGCTCTGGAAAGATTGAAGTTTGGTAATGAGACGTCTCATTTAAGTGCAGTCAACGCCGATTGGAAGACTCCATCGGAGAAGCTACGATCCTGTCGCTGTACAGTGAACAAAATAGCAGTGAGAATGGGAGTCGGAACGCGTTCGTCAACTAAAAAAACCGAAGAGGAGGAGGAGATAAAGGCAAAAGAAGTGGGTATTAAAGTTGACGCTGAAACTCAAACCGACCCTGAAATAACGGGAGTAGACGCGGATGATTTCGAAGAAGATGATGGCGAAGAATCTGGCTCAGATAGCAGCGATGATGAAGATGATGAATTAGAAGCAGGGGAAGACGGACTAATTAAAAGTGTCGACAAAGGAACTTCATCCAAGCCAGTGCGCCGTAAAATTATCGAGCTTAAATATTACTTCGGAGAAGATTTGCCCGACGCGGAGCTCAATAAACTTGCACAAGCAGATGTTATTGTTCCTCCTGGACTAGAAGTCAAGGAATCGAGCATTCCAAAGGCTGGCAGAGGAGTTTTTGCTAAGTGTGTTATTCCAAAGCATGACTTCTTTGGACCATTTGTGGGTAAAAAGATTCCAGCAGAAGAGGCAAAGAAGTACAAAGACTCTTTGTACATGTGGGAGGTGCGAGATGACTATGGGAAGCTGATGCATTTGATAGATGGTCGTGATGCTTTCCAGTCTAATTGGCTTCGTTATGTCAACTCTTCTAGCAGTGTGACTGAACAAAATATTCGTGTTGTTCAGTATGATGGCAATATCTACTATATGGCAACAAAGCAGATTGAGATTGGACAGGAACTGTTAGCATTTCATGGTGAAAAATTTGCACGAATCCTTGGAATTAAGCGACCTAAGAGGAAAGCAAAAGAAACTGAACCCAATGATGATGAAAGCTTTGCTTGTAAAAACTGTGGAAAGATGTACAGTAACCCTGCATCACTGATTGGACATCTGAAGTACAAGTGTAACACAGGTCAGCAAAGAAGTATTTTTGTGCCTCAGCCTGTTGGTCCACGAGCTGCAATTCCTAAGATAAAAGTCACTGAGGAATATGCCCGCCAACAGAATGAGAAACTAAAGAAGTTCAAGTGTGATGAATGTGGCAAGGCATTCATTCGCAACTACACCTTACAATGCCACAAGTTGATCCATACTGGTGTGAAAGAGCACAAGTGCACAGAGTGTGGCAAAGAGTTCACTCTCTTGAAGCATTTGCAACGACACCAGCTTGTACACACTGGAGAGAAGCCTTACAAGTGTCACCTCTGTGGCCGTGCCTTCTCTCAGCAAGGCAGCCTTCAAGCTCACAGCCGCACCCACACTGGAGTTAAACCATATTCCTGCAAGATATGTGGAAGGGCCTTTGCACTCCAGTCTCCTCTTCTTTCTCACATGAGGACACACAGCAAAGAGAAGACATTCAAATGTGATATCTGCGACAAGGCGTTTACACACAGAAATACATTGTCCAGACATCAGCTCATTCACACCGGTGTTCGTCCATTTAAGTGTGATGTCTGTGGAAAAACATTCACACAGACCAATGATTTAAAGCGCCACAGTCGCATTCACACTGGTGTGCGTCCTTACAAGTGTCACATCTGTGGTAAAGCCTTTACAGTTGAGTTCACTTTGGTTTGCCACATCCGAACACACACAGGTGTTCGTCCTTACAAGTGTGATCATTGTGAAAAGACATTCACTCAGCCAGGTGCCCGTCTGAAACATGTGAGGAACTACCACCCTGACAAGCCACTTCCTAAAAAGGAAACTTTTAAAGCCACATCTGCAGAATCTTTTGCAACTGTCAGTTCTCAAAATACAGTGATTTCTACTACAACCTGTGCAAACAACTCCCAAGCATCCCGTAGTTCTGCTAATACTGATAACTCATCCACTATTCCTGATGATGAGATAACAGAGAATTCCAACCCTGTCGTCAGTGATACTGAAATGGTTCAATTACCTGCTGACACTGTAGTGTTGTCTGTGTCCTAAATCAATGATAAAGGACTAATTTCTGCACAAGACAGCTTTGTAGAATCAAGGATGCCAACTGCATGTTTAGACTACAATAATAATTATTATTGTTTATCTATGTTCTCTGTGGGATGAATTAAATGCTGATTTAATGATATATGTATGATGTGGTGTAAAATGGCCTTCACTCTCAAAAGGATTAGAACAAAGGGAAGGAATCGATATTTCACTTAATAGTTAGGTGATACATTTAAGATTTCGGCACAGGAAAATAACATATCTGCTAATTTAACTGTTTTTTGAATGTTAAACACAACAATGTGAACAATGAAGGAAAAGGGAGAATTTTCAGTTTTAGTCTATTCAATTTAATGAAGACAAAGGTTTCATAATGAATATCATGATTATGAGAATGTGTTTGACCAGATATACCTACAATAAATATAATTTGATGATGCAAGTTAATGTTTGTAACGATATTGAGTCTTATGCTTTGGTTTAGAGTGGACAATAGGCAGTGTTTTCTGGATTTGTGTGAAAATGTCATGATGTGTTTTTTTGTATGAGGTTAATAAACCAGGAGAATCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2A935	Histone-lysine N-methyltransferase PRDM16 OS=Mus musculus OX=10090 GN=Prdm16 PE=1 SV=1
P14404	Histone-lysine N-methyltransferase MECOM OS=Mus musculus OX=10090 GN=Mecom PE=1 SV=2
Q9HAZ2	Histone-lysine N-methyltransferase PRDM16 OS=Homo sapiens OX=9606 GN=PRDM16 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009677 (this species only) · gene tree & orthology
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR044417 all species →	Domain	PRDM7/PRDM9, PR/SET domain	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR050717 all species →	Family	C2H2-type Zinc-Finger Transcription Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14196 all species →	ODD-SKIPPED - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001655 all species →	Biological Process	urogenital system development	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009790 all species →	Biological Process	embryo development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0099.g144.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.