Detailed information of amic_s0099.g45.t1 in Acropora microphthalma

Genomic Location: sc0000099_pilon:777408...839618
NR annotation: XP_015774340.1, PREDICTED: nucleotide-binding oligomerization domain-containing protein 1-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
C6FG12Protein NLRC5 OS=Ictalurus punctatus OX=7998 GN=nlrc5 PE=2 SV=1
Q8K3Z0Nucleotide-binding oligomerization domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nod2 PE=1 SV=1
P59046NACHT, LRR and PYD domains-containing protein 12 OS=Homo sapiens OX=9606 GN=NLRP12 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000076 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00029
all species →		ConnexinConnexinDomainInterproscan
PF13516
all species →		LRR_6Leucine Rich repeatRepeatInterproscan
PF05729
all species →		NACHTNACHT domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013092
all species →		DomainConnexin, N-terminalInterproscan
IPR007111
all species →		DomainNACHT nucleoside triphosphataseInterproscan
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR003593
all species →		DomainAAA+ ATPase domainInterproscan
IPR050637
all species →		FamilyNLRP family, innate immunity and inflammation regulatorsInterproscan
IPR038359
all species →		Homologous_superfamilyConnexin, N-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45690
all species →		NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0099.g45.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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