Detailed information of amic_s0100.g11.t2 in Acropora microphthalma

Genomic Location: sc0000100_pilon:125054...164835
NR annotation: XP_029204296.2, 3'-5' RNA helicase YTHDC2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5R7463'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2
Q9H6S03'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2
B2RR833'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003208 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796
all species →
Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF01424
all species →
R3HR3H domainDomainInterproscan
PF04408
all species →
HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF07717
all species →
OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF04146
all species →
YTHYT521-B-like domainDomainInterproscan
PF21010
all species →
HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF00270
all species →
DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001374
all species →
DomainR3H domainInterproscan
IPR036867
all species →
Homologous_superfamilyR3H domain superfamilyInterproscan
IPR007502
all species →
DomainHelicase-associated domainInterproscan
IPR002110
all species →
RepeatAnkyrin repeatInterproscan
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR007275
all species →
DomainYTH domainInterproscan
IPR048333
all species →
DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036770
all species →
Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011709
all species →
DomainDEAD-box helicase, OB foldInterproscan
IPR011545
all species →
DomainDEAD/DEAH box helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934
all species →
ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0004386
all species →
Molecular Functionhelicase activityInterproscan
GO:0005622
all species →
Cellular Componentintracellular anatomical structureInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20099YTHDC2; ATP-dependent RNA helicase YTHDC2EC:5.6.2.6
Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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