Gene detail

Detailed information of amic_s0100.g20.t1 in Acropora microphthalma

Genomic Location: sc0000100_pilon:297791...302965
NR annotation: XP_015751415.1, PREDICTED: la-related protein 6-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0100.g20.t1

CAGATTGGGTTGACTTGCGGGAGAGAAGGACTTCCTACAGATCTGGAAAAGCCATTTGGACGTTACCTTTTGATCCAAAGAATGGCTGAAGATCTCAAAAAGGACTCAGTTAAGGCAGTTGTCTCTGAAGTGACCGATTCGCCAAGGCTGTTGATAAATGGTAAAGAATTCGCTACCTCTTCGGATCACGATGTCGCCGGTTCGTCCCATTCAGAAGATGAAGGGGATCGCAAGTATACACACTCTCCCATTGATTCTCACTCCGATAACGACTTTAAAGATGGAACCGAACCTTTTCATCCCCCCAGCTCGGAGTTATCAGAGAAAATCGTTTCGCAAGTCGAGTTTTACTTGAGCGATGAAAATTTAGCAAAAGATGCTTTTCTTCTAAAACACGTTCGTCGCAACAAAGAGGGTTACGTCAATTTAAAGCTTGTAACGTCTTTCAAGAAAGTGAAAACGCTCACTAAAGACTACAGAGTAGTTGCTGAGGCATTGGAGATGTCGAAAACGCTATCAATGAATTCAGAAAAGACGAAAGTTAAAAGAAACACTCCTTTACCTTCCGAGCTTCTAGAACGTAACCCAGGAAGAACCGTCATTGTGACAGGTCTTGAGAATCCTTCAATGGAAAACGTAAGCGAAACTTTCTCAAAATGTGGTGAGATTGAATTAATTCGCATCGTTCGACCAGGGAAATCTTTCCCTTCGGATCTGAAGGTGCATTTCACGAAACATCCCGAGCTTGAGACAGAAATATGCGCTGTGGTTGCCTTCGAAACAATGGCCGCAGCTGCCCGGGCTTGTAGCGAAATGTCGAAAGAGGGAGGAATGAAGGTGGTCGAACTTGGCAAACAAGGAGCTAGAAAGGAGAAGTCAAAGACCAAATCGAAGTCGAAAGAAAAAGGAAGTGATGTCGCTAGAGAATCTGATGATGAAAATGACGAGTCGACCAAGAAACGCCGGAACAGAAAGAAAAACAAGAGATTACAGGAACTAATCGGCAAGAGTTCGGATGACGGCTTTTCAAGTTCGTGTTCGTCAGATACAGATAACTCTTACTCTTCATTCAGCAGTTGCCGGCGTCGCCATAACAGTGGAGGCAATCATACCCCTGACCGTAGTGGATGCCCTGTAGGGGGGACCCCGAGTCCAAGACCTCTAAGTGTTGGAGGTCGAAGGTCTCCTCAGAGTAGTCCAGAACTCTCTAGGAAGTTGGTTAACATCAATGTAAAGGAGGGCAGTAGCAGCGCACCAAATAGCCCTTGGTCGCAGCGCCGTAAGTTTGGATCACCTAACATTTCACCGAACAAAAGTCCCCTGGTGGACTCCACCAGTCCCCGTCACAGAATGATCCAATTAGAAGGGGTGGAGAGGCTTCCCAAGGGCCCTGATGGTACCAAAGGGTTTAGTGGTCTTGGAAGAGGCAGGCCTCTTGTCACTGTTTCTTGAGACATTTTTCTTTATTTATTAATAATTAAAGTAAAAATTAGGGGTATGTGTAACACAGTTTATCGCATGGATTCCAAGTCAAATAGAACAGATTTGACCCTAGCTCCAATTGAAGTATGGGATATTCTTGTTGCAAAAAAATTTATTTTTATGCAAAAATGCAGGGAAACCTTTTGTGTCTGTGAGGTGGTGATAACCCTTCAACAGCAAAGTTAGTGTTTGTGAAATAACTGGTATTTCTCTTTACATAATGTTTAGAATTTGCTTTCTGTAGATGGTAAATATCCATTCTTGGAAATTTCATTACTGCAAGTGCATTCCATGGTGTCCACGCTAATGTGTGAAAGTTTGCATAGGTTGCAAAACATGAACAAATTTACATGATTAGTGCTGCCTAAAATTTTGCACAAAGAAAAACAACAACAACTGTAAAAAAGCATTGAGGGCCACAAGATGAAAAACCAGAGGAAACCATTATTTGCATTTGGTAAAGTTAAGGTGCAATTATTGTTGCTGGACAGCCAAGATAACAAAAACTCACCAAtaataatattattactattatgaatacaatttattattTGTCTTTTTGTTTTGTATGACGTACCTTCAAAGTGTAATTTTTTGGTTTTAATCAATTATTAGACCTTAATGATAGCTAAGCATAGAAAACTTAATCTGAGACAAAAACAAAAATCTTAATTGTTAACCTTACAGAATTAAACCAACATTTTCTTGTCAAATTTCAAAGTTTAAATTTTAAACTATTTTTGTTTATAAGAATTTGGTTTTTTTAACATTACCTTTGGTAGTTGTATCTTTCATGCAACTGATTTTTAATCTTAAATAATCTATTTATATATTTAATTTAGACATTTACACACCATAAAATATCTTGTTGTCTCCTTTTTAATAGTATTTTGTGTTCGAGTGAGGTGTTCTGAATAATGTTATTGTTAGGTACAGTATCACTTCATGCCATGCCATGTGTCCATGATGTAGGTGGAGATTTTGCTCTATACCTGATACTGAAGGATGCAACTTTGAAGATTGCCTGTGTTTGAACTTGATATCTACAAATTATATGTGCTGCTACAACAAGAGAAAAACTATTTAAAGCATTGTTGCTGGAGCAAATGACTGTACATAAGACACATCTCAATAGCTACAGGAATAGTTCAGATTTTGGCAAGATTTATTTGCCATATTTTTCAGCTAGGGTTAGGGTTCGTTGAAAAAGTGCCAAATCTTGGGTCATGTATAACAATTTAAGGTATTTCTGACAAATGAACCTTGACATTCATCTCTAATGTTTTGATTTCTGTCCTCCAATCTGTTTTTATGCAATAAATGGCTTTTGATACTGCTCTGATTGTACAGTTGTTTGTGTAAGGTTTACAGGTCAATTGAAATTGACAAAGAAAAGCACTAGCATTTAAGTTATATTCTTTTACATGTAAAAGCAATATTGGAATTCATTGTTGCTCTCTGCTTATGGACAGTCTTAGAATAACATCGTTAATTTAGAGAAAGGAACATGTACGCAAAAATCAGAAAGCAGTTTTCACTTTGTCAGAACTCGGTCTGATTTAAGCTACATTTTGCAACAGGACTTTTAGGTGTACTTAATTTTGTAATACATACATGAAAGTAGAACATTGAAAAGATATAATACGAGTGGTTTTGTTGACGAAGTAATGTGGATTATTTTTATGTGTATTTATGTATATACTGTATGCTTTGATTCGCTTGTATCAAGTTTCTTTGGGAAGGACATGGGGCACAAAACAATCATTAATTTAAAACCAACCATTTTAATTCAAAACTCTTGCCTCAAACTTAATTATAAGCACTAACAAACTACTATTGCATTTCGAAATGACCCTTTAAAAAATTATTGTACTGACCTTATCTGTGACTGTTAAATTTGGTGTGGAAAACCAACAAATCTAAATTACTCTAGAAAAATTACATTTGCTAATTACAATAATATTACAATGGTCAACAATTTGCAAACTTCTCCAGTATACAATTTCTTAAATAATCATTTACAAAGAATTCTTTGGCAGAAAGAGTTCCCTCGTCAAAACATGTTGTACAAATAGTTACAACTTGCTTCAAAACAAATTTAGTAAATACATTCCTCAACCTCACTCATAAATCTTGGCAGCTTTGACTGTGAAGAATTGGAAATGCCTGCACTTCCAACCCTCAATGAATTTCCCCGTCGATTTTTTTTCTCATTTTTTAGCTTTTGATACTCCCAACCAATTTTGAATTCCACAATAAATAGCTTAATAAGCAATTATTTGAAACTGAAAATAGGTATCTATGGCTTGCCTTAAGGTGCCATACAAATTATACACATTCTCTTGGTTCATTAAAAGACTTTACAATACTTACATTTAGAAAAAGCTATTCTTTGTTTAAAAACTAAGGATTTCAAAGTTAATAAATACAGTATGTAACCTCTCTTACAAAGAGCAATCGTGAATAATTATAGCTAAAAGAATTGCAGATTTGTATCAATTCACCTGCATGCAGACTTTATTTGTTACAGATACTATTCACCGTACTTGTTACTGGAAGTAATAGGGAGTTTAAACAACAACAATCATGGTAAGAGCAATGACTCCAGAAAACAATGAAATGATTGAATCATGCTGCAGGTATGGCACACACTATATTTTTTGCCAAGCACTTACGCAGTCCTTCCACCAGTCTATCTGCAGAATACTTTGTCGACAATATGAGCAAATATCTTCATTATCAAGAGAAACTTTCATTTCTGTGGCTATTGCTGCTGTTTAAACTTCCTAAAATATTTTGTGTACTCTTTAACAGCTATTTTAAATTGTCTTTGGTTTAAGATAACTAAATTAAAAACTAACATCAAAATATCATAAGCCCAGGAAAGACAAAGGCAAAACCAAAAGAGAAATGTCCATGTTCCCTGTGCTTAGCGTTGATTGCCTTTGCTTTGTGGATGATCAGCTCATTAAATAATTGACTTTGTATCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BN59	La-related protein 6 OS=Mus musculus OX=10090 GN=Larp6 PE=1 SV=1
Q9BRS8	La-related protein 6 OS=Homo sapiens OX=9606 GN=LARP6 PE=1 SV=1
Q94A38	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008657 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12901 all species →	SUZ-C	SUZ-C motif	Domain	Interproscan
PF05383 all species →	La	La domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006630 all species →	Domain	La-type HTH domain	Interproscan
IPR024642 all species →	Domain	SUZ-C domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002344 all species →	Family	Lupus La protein	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR045180 all species →	Family	La domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792 all species →	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005844 all species →	Cellular Component	obsolete polysome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18733	LARP6; la-related protein 6	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.