Gene detail

Detailed information of amic_s0100.g33.t2 in Acropora microphthalma

Genomic Location: sc0000100_pilon:479605...489612
NR annotation: XP_029193440.2, cyclic AMP-responsive element-binding protein 3-like protein 3-B isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0100.g33.t2

AATAGTGTCATTCCACGTCAAAGTTCGCTCTACTCTCTTCGTTTTCGTGGCTTTAGTAAGGTTTATGACAAAATGATTGCGACTGCGTCTTCCTCTACTGTTACACTAGATCATCAGTACGCTAAGAAAGATGAATTACCCGACGAAAGTGACTTCTTTTCCAATTCGACGGATTTCCTCAGCACATGGAACTCGAATAACATTGCAAACCCTGATGAACATGACATACTTGAGATGTTGTTTGCACAAGACTTAAAAAGTTTTGCTGAAGCTTCACCACACAGTGAGACCCTCTCTTCTGATTCCGACATGATGCCTAGCCCTTGCATGGTGGATGATGCTGAGTTAAGTGAAATTCTGAGCTCATCATCAACATCACCCGGGCTTACGCATAGTAATGAAGACTTCACTATTGATTTTGGTTGGGACATGGATTTTGATCTACCTGGCCTGGAAGGAAACAATAAGGATGATTCCGAGTTGACAAGTGTTACCACAAGTTTGCCCACAACAATGGCATCATCATCAACAGTTCCAATGAGTCAGACCGCAACCCCTGTGCATGTGACAGCTGTCTCTCGTACAAAGGTGGCCAAGCTTTTGGTTCTTTCAAGTGAGGAGCAGAGATTATTGGAAGTGGAAGGAGTCACTCTACCAACTGACATGCCACTTACAAAGTCTGAGGAAAAAGTTCTCAAGAAAGTGAGAAGGAAAATCAAGAACAAGGAATCAGCGCAGGAGAGTAGAAAAAAGAAGAAGCAATATGTGGACGGATTAGAAGAAAGGGTCAAGGCTTGTACTGAACTTAATCATAACTTGACCAAGAAAGTAGAAACTCTGGAAAAGCAAAACAAGTCCCTTCTTGATCAGCTGAAAGAACTTCAATCACTTGTGGCATCAACACAACCAACCAAGGCTGGCACATTCTTAATGGTTCTGTTTTTGGCATTTGGTTTGGCACTGTTTCCAGTAAACAGTAAACTTGGAGAGCAGAAGGAACCTGGGGCCCCTTATGCATCCACTGTGGTTCGATCACGGACCCTTCTCCAGATCCAAGAGGAGTATGTGACAGACCCAGAAGATTTTCCCCAAACTGTTCAGTTTAAGCTGAACAACTCAGATTACCTTAAAGCCACTCCTCCGGTCATGTCACACAACCCAGTATCGCATGAAGTTACAGTTGAAGTCCCAGACTTGGACAACAGTATTCCAGAAAAGCAAATCAAATCCGAAAAGCGGTAACTTGACAGAATTTTAACTGACACATAGTCTATAAATGTTATCATTGTATTGGTAAACTGTTAGGTGTTACAGTTCTTCCAAGGGCATAAGCAGTTTGCGACAGACAGCCAGCTAAGGACTGAGGAACGACAATTCAACACTGTTTCCTCATGGCTGGCTGACTAAAATAATAAGCAGTACAATTATTGACTGAATGGGTGAAGTAGTCATTCTAAATGGGTTTTCAGCTCAACCTTTATTTTCTTCGAAGTTTTAACTACATGGCAAGAGCGTCGTAGAGAAAAAATACGTACCAAACAGCACTTTGTCTCATCACCACTTGTTACCTTTACTCTTTAATATATGTTTTTTTCGCTTTGAGATAAATCAAATTCACATTTCCCAAAACACCTAGTTTTGGCGACTTGATTCAAAAACAGGATCTATTTTTTTTTGAACAAGTCTCCTTTATTTTCTTCTTCTGTGAATCAATGCCAGAGGTTAAGATTTTATCCAGTCGTTATATTTGTATGTCCTTTCATATATGAAAGGACATGTAAATGCATATTATTGATGTCGCAGTCCTGTATCCCCATTGTCCCATTGGGTTAGATCGCCATCATCAAAAAGATACAGACTCACTGCGATGTGCTAGAGTTTGTCAAGGTCTCTCAAGTCATTTTtgtgtgtgtgtgtgtgtgtgtgtgtgtTCTTTGCCTATTACAGTTCCGTTTTTACTCGTTTTCTTGCATGAGATTGTTGCCTGCATGATACGTGACTTTCATATAGAGCTCAATGCGGTAATTTCATTTCGGTCAGTTTTCAGagagggtggcaaagggtttatgcttgacgcgtgataagggctaaaacttgaacgtgacgcgtgaaagttacttaacaagaaacgtgattcgtgaatacctgaatgcatgtgaccgtgatttatttcacgaggtatgcgtgatgtttgaattatttgtgtttggtcgtgaaaatttcgtttccctgaggtttctccgacaatgactgattcaaaacgtgacgcgtgaattttgttaaaatttgtgcgtgaaacgggatcacgatcccccctttgccaccctcTTCAGACTGCGAGTGGTCTGCTATCTCAGCCTCCGAATCTCGCTAGTGGAAGTGTTATTTCGCGCCCAGCTTAGAAACTACTCACCTTCTAGTCAGTCTTTTGTACTAAACTACGATTACTAAATATATTCAGACTAAAGCAATTGACTAAGCACCACGTAGGAAGCGTTAGATGTAAGAAGTAGAACAAACCCTATGTCCGAATGGTTCGTAACATGCCAAAAGGCAAACAAGATATAGTTTGTAAATATGTAAAAATTAATTCGTGTAGTTGTAGAGCATTTATGAGAAAGTTGCAGTAATTTTACAAGTTCTCGGTTTTGTAATGTGCAAGAAAATAAACAACGAAACGTTTTATTGACAAAATAAAGAAAGGCGAAGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91XE9	Cyclic AMP-responsive element-binding protein 3-like protein 3 OS=Mus musculus OX=10090 GN=Creb3l3 PE=1 SV=1
Q68CJ9	Cyclic AMP-responsive element-binding protein 3-like protein 3 OS=Homo sapiens OX=9606 GN=CREB3L3 PE=1 SV=2
Q1LYG4	Cyclic AMP-responsive element-binding protein 3-like protein 3-B OS=Danio rerio OX=7955 GN=creb3l3b PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001111 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00170 all species →	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR051381 all species →	Family	cAMP-responsive element-binding ATF subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45996 all species →	AGAP001464-PB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09048	CREB3; cyclic AMP-responsive element-binding protein 3	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.