Gene detail

Detailed information of amic_s0100.g42.t3 in Acropora microphthalma

Genomic Location: sc0000100_pilon:607193...636862
NR annotation: XP_044162911.1, AT-rich interactive domain-containing protein 3C-like isoform X3 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0100.g42.t3

CTGGCCTTTCCCACGTGTCGTTCGCTGCGCTGATTTTGCAACCGAATCTGCCCAGCGCCTTGCACCGACGTGCCAGGAACGGCGCAGTAGCTCTCTCTGCATCGACTGACTTAAAGACTGATATCCGATAAGTTTGATCAAGACCAAGGCCGCCACATTGAGAGGTCCTCGCGCGATTCAAGAGATGTTCGGGTCCAAAGAGGAGTTCGCTTGTCCAAGATATTCGTCGAGAGATGATTACATTGGAATTCTGTCAGCCTATAATGCGAGGATTCCGCAATCGAAGGCCTTTCAAAACGGAATCTCAATGTTTCAGCTTGACAAACACAAGTGCTTCCGATGTTTACAAACGAAAATCATATATATTTCTTTTAAAATTGTTGCATTTAATATGTACATTTCCCCGGTGACAATAAAAGCGCCGATCACAATGTAACGAAGATTTGATTAATATTCGTCGCAGAGATAATAGTTTTGATGTGTCAGTCGATGTTTGAACTCCAACTGGTCGAGTTATGTCTTCGAAAAATTTGTCGGCCAATGTGTGTTACCTTCAAGAAATAAGCTTTTGATGAAAGCCCCGCGATTATTGAAATAAAATTTCTGACGAGCGCAACGGTGCAGGTATGGAAAAGGGGTCATTGCAAGCACCACAGCGGAGCGTATCCACCGATCGAGATGAACTGCGGACGGAGCGGGAGATCAGGCGGGAACCTTCATCGCCGCCGCGCAGTTACAAGCAGCACCGCTCGTCACTGTCGAGCGGCTCGGTGGAGAGCCGGATGGCGGAGCTTGACGATATTCAACGATCGATGGAGGTGGAGGAAACGGAGGAGGAAGAATTGGACACGGCTAGGATTAAGAGGGAGCCGTACGATACAGATTCAGACAGTGTTTCCAGTGGGCGCGAGGGAGGAACGTATCCGCATCACGGTGCTCGCGTGCAGTGCCAACAACCCCCTTCACCAGTGGAACCTTACATCAACAACAATGTCAGCGGGATGGACAGCAGAATCGCAACTCACGAGTGGACTTTTGAAGAGCAATTTAAGCAACTAGTCTTTCTTGACACACTTTATGAATTGGGTGCTGAAGCAGAAAGAAAGGAATTTTTGGATGATTTATTCACCTTCATGCAAAAAAGAGGAACACCAGTAAATAGAGTTCCCATTATGGCAAAACAGACATTAGATTTATTCAAATTATTCCGGCTCGTGGTTGACAAAGGAGGACTTGTTGAGGTAATAAATAAAAAGATTTGGCGAGAGATCATCAAAGGTCTTAGTTTACCAGCGTCGGTCACGAGTGCAGCTTTTACTCTTCGTACACAGTATATGAAATACCTTTATCCTTACGAATGCGCGAAGAAAAAACTCTCCACGCCCGCTGAACTCCAAGCTGCCATTGATGGCAATAGAAGAGATAGTCGAAGATCGTTTGGCTCATTCCTATCACAAGCCATGCCTTCGGAGACGACGCACGCTTACAGTAGCCCGAGCCCGACAACAACCCCACCGGCTTTTACGGCAAGTAGTCCCCCCGGAATAAGCAACCGGTCAAGTCCGGGCTCCGGTCCGGGACCTTCCACCTCTAATCACGACGTGCACGTACCTCCGTCAGTCCATGGTAACAACGGCGTTGCTCTGTTGCACTCGCCGGGCGTGGTTCAATTTAGTCCCAAACGTTCCTCGAGTGCGGCTGAAGTAGCGTCAAGGGGGGTCTCTACCTCCCCCTCGGATGTTTCACCCTGTGGTTCACCAGTCAAGAAATTCGCCGCCGCGTCAAGTAACGAGCGCAGCAGTAAACCAACCCCAACTCAACTGCCTTGGACACATATTAAGATACAGACTCAACCAAAAGGTGTGTCACAAAGCGGCCATTTCCAGTTCCCTGATTCTGACAGATCATCGCAAAGTCGAGAACAAAGGCAGCTACCGCTGACCCTTCTGGATCAAGTTAGTGACAACTCATTACTGGTATCCGTGGAACTCAATGGCGTAGTTTATCAAGGCGTCTTGTTTGCGCGGCCCTCAAATCGACCTGATTCGCGAAAAAGTAACGAAGATTATTGAACGTCGAAGTCGTTTCCTCAAATGAAGGCCTGGAGGCTTACCTCCTACTCTACATCATATGGTTTGACTGACTGAAGGTAGCATATAATATTCCTGTCCTTTCAAAAGGAGAAGTCCCGTATGTTATGTCACACAATATGTCCCTTCATTTAGCTACAGTGCATATTGCGAGACAAAACTGGAAGTACAATTTCGAATTTTTTTAGGATTCGCCATGTCACAACTGGTGTCAAATTTTGTATTTACTCTGAAATGAATGGCTACTTGTACATTGTGCTGGGATATATTAAGTGCCAATTTTAGTTCCTTTGATTGCATACACGGTATCTTTGTCAAGATAGCATCAGGAACAGGATACATTTTAGTCGTTTGCCAAGTGAAATCCAGCCAATCAACTTAGATTGACATCCCCTTGCCGTTTCTTTACACGGTATCTTTCATACTCAACAGTTTCATCTAAAGGTTTTTAACAAAAGTGACTGGTTGTCTTTTGTTAGAATTCTTTTTTTGGGGGGAGGGGTGCTTACATTGATGTTAACAAATTGCTTAAAATTTGTTCATCTATTGACTGTCTTAATTATACTTAAAAATAGTCAGAAAGCTTCTTATCAATTGGATATCTGCTATGAAGCCACTAGCCAAATGATTAGCATGATTAAGCATTTTTTATTGTAGTTAAATCCATGCACAAACATGTTGTAAATATATGACAGCTGATGAAGTAAGATAATATTTTCGTTAATTCCTTAAGGAGGACCCAAGTGAAAACTGTACAACCTCTTCCTGTGTCTTTCGAAGATTGCTTTTAATTTGAAAAGCATACTTATTTATCTTCTGTATAGAATCTTATTTGAATTGTGGAAGTGAGttctttttttttgtttttctttttGTAACAATGGCGTTTTGGGACGAGGGTTGTTGCCAGTCAGCAAATCACCAAAGTAAAAGATGTAAAGATCTAGGTGATCCTTTGAGATCACCGTTTAGGTTTTTGGTTCGCGTTACTTTGGTTGAGTTTCTTGTTGATGCAGTTATTGACCTTTTCGACAATCCCAGAATAATTTGGTTGAAAACGATGGCTCACATTCACTGTCGTTTTTTCGGCTGTAGTAACTGGTCGGGAATATCTCCAGTCGCTGATAAGTCTGCTAACAACTTTTGCATGAAGTTAACGTGTTCGAGTCAAACTCAGTTTGCAATTTGTTAAACGGAAAAAACTCAAACTGACCGCGTTCAACCCTACGCAAGTTATGTTAGAAGTGATTTGTCACTTCGTCACTTTTTGCAGATTTTTGAATGTCTATTTACTATTTCCCGTGAATCTTTGAATCCAGAGAGTTCCATGGCTAAATTTTTAGCCAAAGACGTATAATTCTTTGCTAAGAAAATTTTCAATACCTTTTCTTTCTCATGAAAGAAAACTGTCCGTAACACTCAATGAGTCCATATGAATAACAAATCACAGGTTGTACATTTGGGAGAAAATAACTGTTACCCATAGAATAAATGTGTAAAGATGTAATTTTTTCTTTGTCCTCAACAGATTATTGAAAAATGATTTTCATAAGAAATACCCCCTTTGCCAAGGGTTCAACTGAACTCTACTTTTACCGTTTTATTTTCATAGTTGTAATTGTGAAACTGTGAAATTGTCTGTGGCTGTGGCCATCTGTCACGTATTCCTGTTGGCAGGAGGATTACGTGACTGACTAAGATACGATTGCACAGTTCATCAGAATGTCCACAATGTGATGGACGGTTTTTTTATTTCTTTTAATTTGGAAAGTTTTAAAATAAAACTGAATGATTTGTCCAATGCTGTGTAAAATAGCCAAACACGAGCAATACCCTTTTCTTTACGCTGAAATATATATTTCTTTGATATGGAGCAATTACTTTGTCCCAAGAAAGATAAAATAATTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6PWV5	AT-rich interactive domain-containing protein 3C OS=Mus musculus OX=10090 GN=Arid3c PE=2 SV=2
Q62431	AT-rich interactive domain-containing protein 3A OS=Mus musculus OX=10090 GN=Arid3a PE=1 SV=1
A2BEA6	AT-rich interactive domain-containing protein 3A OS=Danio rerio OX=7955 GN=arid3a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002279 (this species only)
Transcription factor family	ARID · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR045147 all species →	Family	AT-rich interactive domain-containing protein 3	Interproscan
IPR023334 all species →	Domain	REKLES domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15348 all species →	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25856	ARID3; AT-rich interactive domain-containing protein 3	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.