Gene detail

Detailed information of amic_s0100.g47.t1 in Acropora microphthalma

Genomic Location: sc0000100_pilon:675404...700602
NR annotation: XP_029186442.2, uncharacterized protein LOC114954108 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0100.g47.t1

atggacttcaacaagtggaatcccttctgggcaacttgctttgtcgtactggctttccttatcatcgttggaaactctcttaccatcgcaacacttctgagaagaaagtttcgcaaaggttctcatctcttgttgatcagtttggccgttgcggatctgttggttggatgcacgattccaccgtCTACGGTCGGAATGGATATGCTTTCGCACAAACCAGAGATTCTATTATTCATTTGGCCCGTGTCCTTATTTGTTATTGTGtcttcggtattccatttacctctgatttctcttgaacgacttcacgcgactcttcggccatttcgtcatcgacagcttactcggaaagtctactggattgccatagctacgccatggatcatttccgcctccttcgcaattccaAGATTCGTGCTAAGAAGGTTCATCCAGCCTTCGGATGAGGTATTCTTCGTAATAGCTtttgcaacaactccgttactgattacgtgtttttcctactttgtaatctggaaaaagactaggcaaagtcgcaataaggtgaaaagttttaggcaaaagaaagaagcaagattcttgaggatcattttcaccgtaacggcagcatcttttgcaacatggctgccttttcagttgtataagattgtcgtggTCTCAAAGCACAGCCGCAATCATGTGTTAACCTCGAATTTGAGGAGAACTCAACAACGACAAAACATTCGCACACCTTTTGATGGTTCTCTTCACCTTGGGAGAACGCCTGTAGCGAAAAGTTTCCAGTCAAACCCACGGCCAAATGGAGCACGGAGTAACTTGGAAGGAAAAGGACGACTAGataaaatgaAAATAGCGAAGAAAGGCGCAAGGAAAAGTTTGACGTCATCATCCCATTTTCCAGGCTACAGACGGAGAACACTACCAGTGAAACTGAATTCCCCGCCAACAGCCGCTGCCGCAACAGAAATACAAGGCGCGGTGGTAGAGAAGGGAATTGAAGTCATGGGAAAGATGGTGGATAAACAGCTACAGATTGTTGACGAGGCTCAGGAAAAGGCAGAAAATTTTCTTAAGAAAAAGATTAAGCTAGATATTCTCCCAGAAAAGGGTTGGAACTCGGACGATATGTTTGTTCCACCTGGTTATCATTTAGATTCAACAATAAGCGACGACGGTGGCTCTCCGAAAGAAGCCGAATACCCAGCATATAAATATTCGGCAGGCCTCGGAAATGTCCTGATGAACGGCTGCTATGGCACCGGGTACAAGCAGGGGGATCCCTGTTATATAGCAAAATGGACTTTGGACGCTTGCTTGAACATGATTGACGGTGCAGCTTTTATGGGCGTGGGTTTTGATGGGCGTGGCGAATACAGTCCTGAATCAAGAAAAATGAGCATTGTCCAACGAAGCTGTGCAGGGAAATCAACGTATGATGACTATGACGTCCCTGACACAATGAATGTTCATGGTATTTACGACACTAAAGCAACCATGATGACGTTTAAAGGCCGCTCTGAGTTCCAATCCTACCAACAGCAAGAGGCTGGCGTTTCGGGATCATATTTCGGTTTCTCGGCCGGCGCGAAAGCAGCTTGGGGAGAGTCTGGAACTAGTGCAAGTCAACAATACATGGCTCAATTGAGTGTGGATGTCAACAGATATGAAGTGTTTTTAGACGAGGTCAAACCACAAGATATTAGTTTGTCTTTTCTGAGAGAATTCATGGAGTTACCTACTTCCTATTTCACCGCTGGAGGCCCTCTCAAATATCAGGATTTCATCCAAAGATGGGGGACACATTACATCAAGTCTTCCAAGTTCGGCGGCCAGCTTATAATTCGCAAATTCATGGACGCTCAAGACGTCTCGAGCAAAAAGGATTTTGCTGTGGAAATGGAAATGGAGTACAAGTCCCTGTTTGCTAGCGTTAGCGCCAAAGCAAGCGCTAAAGGCGGACAATCTTCCAGGAACCAGTCCAAGACCACATCAACAACCGTAATAGCGTTGGGCGGAAGCCACGAGGTAGCCTCCATCTTGTCGGACGCCTATTCGCCTTCGTTTAAGACGGCATTCAAGGAGTGGCTTGTTTCGATTCCACAGTATCCTAAGCCATTTCATTTCCAAGTCAGCTCTATTACGGATTTGCTGAATTTCAAAATGCGTGACTTGTTTCCTAATGACAAAGTGGATTGGGGTTGCGAAGGACATGCTGCCAGCTTGGAAACACAGACAGATCCAGATGGGAAGACGGTGATGTTTTTCGAATCTGTTAACGACACGGGGATAAGGGTCAAGCACTACTGTTCTTTTGACAGCCGCAATGGATTGGAAGAGGCGATCAAAAGAAGACGGATCAGTTTGAAGAGAGCGATTGAAATTTATATGGAAGAGGGTCCTACATCAATATCGGACTTCTTTATACCTGAGTGCAAAACTCCTCCACACCAAGGAAATGACCCTATGAAACGATCCAGGAAACGATTACCAAGCTGGCAGGGTCTTATCGGCGGACACAAAAGATTTCGCGTCAATTTTGACATGAAAATAGATTTGACTGGTGCAGCGGGCAACACCATTCCCCGAAACATGAGTCGTCTTATGCTATTCTCAGATGGAAAATGGCAAACCGAGGAAGAAGACGGTACATTTCACTTATATAACGCTTTTAGGAATGGGCAAAGTCGTGACCCCAAGAACCGAAAAATATCCGTTCTTGGCCTGGTCTTATACTACAACCAAAATACTGGTGGTCTGGACCTGTTGGCGGATGATGTCAAAGATTCTAAAACGTTTTACCCCAAGATTCCTCACTTCCTTGTATTACACCAGAGGGAGTGGCCATTTACAAGGGACAAAAAGCTTGAGGTCGTCGACGCTCATATTGTACCACGTGGTATGACCAAGGCCGAGTGTAAAGGAGACACTCAGAAGGACCTGGAAACGATGTTGTGTACACAGAAATGTCACGAGTATTGCGATCCACTCCACGGTTGCAAGACCGCTACACCTGGAAGCCCTTTGCCAGAAGAATGCAACAAATGCCGGATAGCCAAGGACCCAAGCAGTAACAAATGTCTGCCAGAGTGCAAGGAACCAAACTTCTTGCAATTGTCGCAAGAGAAGTTATGTGTCAATAAAAGCGAAACGTTTGATCTTCAGCCTGGCAAAGGGGGAGGAGACGCGGTGGTTGAAATGATTTCAGTGCGTGAGATTCCAACCCTCTCAGCTTTGACAATGTGCTTTTGGCAACGTTTCTTAAAGAAACATGACGTCTTTACATGGCCAATGTCCATTTATCGGCACGTTGTCCCTGAAACCAGCACGCAAGGGGCCTTAGCCGTTACTTGGAGGAATTCTTCGACCAGTTCTGGAGTGAAAAACACACAGCTCAGTGTGCATCAGATTGTACGTATTGGACAATACAAATTGTTGGGCAGTCTTATTTATAAAGATCACATGGGCGATTTGGAATGGCATCATTACTGCCTGACATTTAACGGTAAAAGCGGCCTTTTCTCACATTACTTTGACGGGAATAAAGTCAAATCGCAGATTGGCTTAGCAGTCGATATTCCAGGAGGAGGAACCCTCAGCATCGCCGGTTCTACCGAGGATGCAGCTTATCAGATGAGCTGGTACAACCTTTGGGACAGCGTTCTTCCCCCAGATGAAATCAAGAACATGGCCACATCCTGTCTTAAGGGAATTGGGAATGTCAAGAATTGGTTTGACTTCAAGGAAGTAGCGAAAGCGAGAAGTTCTATGACAATTATCAAGCCCTCTGTGTGCGTCGCTCGGCCGACAGAGAGGGTAGACAACTAG

Transcript

amic_s0100.g47.t1

ATTTAATTGGACTCTGCACGTTTCGTCATCTCCAGCAGTTCTCGGCGTCCACGTTTGTGGAGGAAAGTGTAGCACAAGGCTAAAGCGAAGTAACTGGCGTCGAAGGAAAGGCAGAATACTTGACTGTATATTCTGctgagtattatagataatggacttcaacaagtggaatcccttctgggcaacttgctttgtcgtactggctttccttatcatcgttggaaactctcttaccatcgcaacacttctgagaagaaagtttcgcaaaggttctcatctcttgttgatcagtttggccgttgcggatctgttggttggatgcacgattccaccgtCTACGGTCGGAATGGATATGCTTTCGCACAAACCAGAGATTCTATTATTCATTTGGCCCGTGTCCTTATTTGTTATTGTGtcttcggtattccatttacctctgatttctcttgaacgacttcacgcgactcttcggccatttcgtcatcgacagcttactcggaaagtctactggattgccatagctacgccatggatcatttccgcctccttcgcaattccaAGATTCGTGCTAAGAAGGTTCATCCAGCCTTCGGATGAGGTATTCTTCGTAATAGCTtttgcaacaactccgttactgattacgtgtttttcctactttgtaatctggaaaaagactaggcaaagtcgcaataaggtgaaaagttttaggcaaaagaaagaagcaagattcttgaggatcattttcaccgtaacggcagcatcttttgcaacatggctgccttttcagttgtataagattgtcgtggTCTCAAAGCACAGCCGCAATCATGTGTTAACCTCGAATTTGAGGAGAACTCAACAACGACAAAACATTCGCACACCTTTTGATGGTTCTCTTCACCTTGGGAGAACGCCTGTAGCGAAAAGTTTCCAGTCAAACCCACGGCCAAATGGAGCACGGAGTAACTTGGAAGGAAAAGGACGACTAGataaaatgaAAATAGCGAAGAAAGGCGCAAGGAAAAGTTTGACGTCATCATCCCATTTTCCAGGCTACAGACGGAGAACACTACCAGTGAAACTGAATTCCCCGCCAACAGCCGCTGCCGCAACAGAAATACAAGGCGCGGTGGTAGAGAAGGGAATTGAAGTCATGGGAAAGATGGTGGATAAACAGCTACAGATTGTTGACGAGGCTCAGGAAAAGGCAGAAAATTTTCTTAAGAAAAAGATTAAGCTAGATATTCTCCCAGAAAAGGGTTGGAACTCGGACGATATGTTTGTTCCACCTGGTTATCATTTAGATTCAACAATAAGCGACGACGGTGGCTCTCCGAAAGAAGCCGAATACCCAGCATATAAATATTCGGCAGGCCTCGGAAATGTCCTGATGAACGGCTGCTATGGCACCGGGTACAAGCAGGGGGATCCCTGTTATATAGCAAAATGGACTTTGGACGCTTGCTTGAACATGATTGACGGTGCAGCTTTTATGGGCGTGGGTTTTGATGGGCGTGGCGAATACAGTCCTGAATCAAGAAAAATGAGCATTGTCCAACGAAGCTGTGCAGGGAAATCAACGTATGATGACTATGACGTCCCTGACACAATGAATGTTCATGGTATTTACGACACTAAAGCAACCATGATGACGTTTAAAGGCCGCTCTGAGTTCCAATCCTACCAACAGCAAGAGGCTGGCGTTTCGGGATCATATTTCGGTTTCTCGGCCGGCGCGAAAGCAGCTTGGGGAGAGTCTGGAACTAGTGCAAGTCAACAATACATGGCTCAATTGAGTGTGGATGTCAACAGATATGAAGTGTTTTTAGACGAGGTCAAACCACAAGATATTAGTTTGTCTTTTCTGAGAGAATTCATGGAGTTACCTACTTCCTATTTCACCGCTGGAGGCCCTCTCAAATATCAGGATTTCATCCAAAGATGGGGGACACATTACATCAAGTCTTCCAAGTTCGGCGGCCAGCTTATAATTCGCAAATTCATGGACGCTCAAGACGTCTCGAGCAAAAAGGATTTTGCTGTGGAAATGGAAATGGAGTACAAGTCCCTGTTTGCTAGCGTTAGCGCCAAAGCAAGCGCTAAAGGCGGACAATCTTCCAGGAACCAGTCCAAGACCACATCAACAACCGTAATAGCGTTGGGCGGAAGCCACGAGGTAGCCTCCATCTTGTCGGACGCCTATTCGCCTTCGTTTAAGACGGCATTCAAGGAGTGGCTTGTTTCGATTCCACAGTATCCTAAGCCATTTCATTTCCAAGTCAGCTCTATTACGGATTTGCTGAATTTCAAAATGCGTGACTTGTTTCCTAATGACAAAGTGGATTGGGGTTGCGAAGGACATGCTGCCAGCTTGGAAACACAGACAGATCCAGATGGGAAGACGGTGATGTTTTTCGAATCTGTTAACGACACGGGGATAAGGGTCAAGCACTACTGTTCTTTTGACAGCCGCAATGGATTGGAAGAGGCGATCAAAAGAAGACGGATCAGTTTGAAGAGAGCGATTGAAATTTATATGGAAGAGGGTCCTACATCAATATCGGACTTCTTTATACCTGAGTGCAAAACTCCTCCACACCAAGGAAATGACCCTATGAAACGATCCAGGAAACGATTACCAAGCTGGCAGGGTCTTATCGGCGGACACAAAAGATTTCGCGTCAATTTTGACATGAAAATAGATTTGACTGGTGCAGCGGGCAACACCATTCCCCGAAACATGAGTCGTCTTATGCTATTCTCAGATGGAAAATGGCAAACCGAGGAAGAAGACGGTACATTTCACTTATATAACGCTTTTAGGAATGGGCAAAGTCGTGACCCCAAGAACCGAAAAATATCCGTTCTTGGCCTGGTCTTATACTACAACCAAAATACTGGTGGTCTGGACCTGTTGGCGGATGATGTCAAAGATTCTAAAACGTTTTACCCCAAGATTCCTCACTTCCTTGTATTACACCAGAGGGAGTGGCCATTTACAAGGGACAAAAAGCTTGAGGTCGTCGACGCTCATATTGTACCACGTGGTATGACCAAGGCCGAGTGTAAAGGAGACACTCAGAAGGACCTGGAAACGATGTTGTGTACACAGAAATGTCACGAGTATTGCGATCCACTCCACGGTTGCAAGACCGCTACACCTGGAAGCCCTTTGCCAGAAGAATGCAACAAATGCCGGATAGCCAAGGACCCAAGCAGTAACAAATGTCTGCCAGAGTGCAAGGAACCAAACTTCTTGCAATTGTCGCAAGAGAAGTTATGTGTCAATAAAAGCGAAACGTTTGATCTTCAGCCTGGCAAAGGGGGAGGAGACGCGGTGGTTGAAATGATTTCAGTGCGTGAGATTCCAACCCTCTCAGCTTTGACAATGTGCTTTTGGCAACGTTTCTTAAAGAAACATGACGTCTTTACATGGCCAATGTCCATTTATCGGCACGTTGTCCCTGAAACCAGCACGCAAGGGGCCTTAGCCGTTACTTGGAGGAATTCTTCGACCAGTTCTGGAGTGAAAAACACACAGCTCAGTGTGCATCAGATTGTACGTATTGGACAATACAAATTGTTGGGCAGTCTTATTTATAAAGATCACATGGGCGATTTGGAATGGCATCATTACTGCCTGACATTTAACGGTAAAAGCGGCCTTTTCTCACATTACTTTGACGGGAATAAAGTCAAATCGCAGATTGGCTTAGCAGTCGATATTCCAGGAGGAGGAACCCTCAGCATCGCCGGTTCTACCGAGGATGCAGCTTATCAGATGAGCTGGTACAACCTTTGGGACAGCGTTCTTCCCCCAGATGAAATCAAGAACATGGCCACATCCTGTCTTAAGGGAATTGGGAATGTCAAGAATTGGTTTGACTTCAAGGAAGTAGCGAAAGCGAGAAGTTCTATGACAATTATCAAGCCCTCTGTGTGCGTCGCTCGGCCGACAGAGAGGGTAGACAACTAGCAAAACGCATGCTCTTGCCTCTGCAGTGGCAATTGAAACTCCAAAACCAAGACATTTCAAATAAGTCTTTAAATCCGAGTAGATTGTTCGCATTGGCACAGCTCACTGGGAACACAACTTTCCAGATTTCAACCTTTGACCTCATCTGATTAGTCAACGGCTACTAAAGAACAATAAAAACTGCAAAAGAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47970	Neuronal pentraxin-2 OS=Cavia porcellus OX=10141 GN=NPTX2 PE=1 SV=1
Q8UUG8	5-hydroxytryptamine receptor 2B OS=Dichotomyctere fluviatilis OX=2593188 GN=htr2b PE=2 SV=1
O70340	Neuronal pentraxin-2 OS=Mus musculus OX=10090 GN=Nptx2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000542 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01823 all species →	MACPF	MAC/Perforin domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR020864 all species →	Domain	Membrane attack complex component/perforin (MACPF) domain	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR006212 all species →	Repeat	Furin-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46549 all species →	MACPF DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0100.g47.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.