Gene detail

Detailed information of amic_s0101.g16.t1 in Acropora microphthalma

Genomic Location: sc0000101_pilon:192396...194014
NR annotation: XP_029212072.2, cyclin-H-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZBL9	Cyclin-H OS=Bos taurus OX=9913 GN=CCNH PE=2 SV=1
Q9R1A0	Cyclin-H OS=Rattus norvegicus OX=10116 GN=Ccnh PE=1 SV=2
P51946	Cyclin-H OS=Homo sapiens OX=9606 GN=CCNH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009312 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00134 all species →	Cyclin_N	Cyclin, N-terminal domain	Domain	Interproscan
PF16899 all species →	Cyclin_C_2	Cyclin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006671 all species →	Domain	Cyclin, N-terminal	Interproscan
IPR043198 all species →	Family	Cyclin/Cyclin-like subunit Ssn8	Interproscan
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR031658 all species →	Domain	Cyclin, C-terminal domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10026 all species →	CYCLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000079 all species →	Biological Process	regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016538 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan
GO:0070985 all species →	Cellular Component	transcription factor TFIIK complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06634	CCNH; cyclin H	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.