Gene detail

Detailed information of amic_s0101.g17.t2 in Acropora microphthalma

Genomic Location: sc0000101_pilon:195096...205883
NR annotation: XP_015768670.1, PREDICTED: ras-related protein Rab-27A-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0101.g17.t2

CTGTCGAAGCTTCCTTTGGAAATGTCACGTCTATCTTTGGCGATGACCGAGTGATGTCATAGCTATATAGAGTTGAAGAAAATCTGGCGTCATTCCAGTAAGTAAAACCAACACAGACAACTAAAATTGTGGAAAGAACCTGCCATTTTCTGTTATATTTTTTGAGTGATTTAAAACTTGTGTTGTAATCTTTGCTATGTCAGAGGAAGATGATCGCGTAAGGGAGTACTTGATAAAATTTTTAGCGCTTGGAGATTCAGGAGTGGGAAAAACAAGTCTGTTGTACCAATATACGGATGGACATTTTAACCCACGCTTTGTTCCAACGATTGGGATTGACTTCAGGGAAAAGCGAGTGAATGCTGCAAGTGGTATTAAATCACTGGATGGGGAAATTATCAACTTGGAAAACGATTTCAAATATCTTGGCAGCTTTATTGCTTCCACTGAGCAGGACGTCAATACACGACTTGGAAAAGCCTGGGCTGCCCTGAATGGCATGAACAATATTTGGAAGTCCAATCTACCAGATCAGCTCAAAAGAAACTTCTTCAGAGCAACAGTCAAATCTGCTCTTGTTTATCGCTCGATCTCCTGGACACTGACATCAGCTCCCGAGAAAAAGATTGATGGTTCATATACGAGGATGTTAAGAGCAGCTTTGAACAAATCCTGGATCGACCATCTCTCCCATGCTGAACTGTATGGAAATTTCCCTCTTGTCACTGCAACGTTTCGCCAACAAAGACTACGCTTTGCTGGACACTGCTGGCGTAGCAAAAATGAACTGTCCTCTGAAGTGTTGCTTTGGGAGCAGTCTCATAGAAAACGCAGTCGTGGGAGACCAAGAAAAACATGCGTTGACCAACTGATTGCCGATACAGCGTGCACCTATGAAGATCTCGCAAAGTTAAAGGACGACAGAGATAGATGGAAAGAACTTATCAATGAGAGCCGAGCTAGCTCGACCTGGAAAACTCCCGATTCAAAGATGGCGGAAGCTGGTGATTATGATTATCTTTTAAAATTCTTGGCCCTTGGAGATTCTGGCGTTGGAAAAACTAGTCTTCTATTTCAGTACACAGACAAAGCATTCAATCCTAAGTTTATTTCCACAGTAGGAATAGATTTTCGTGAGAAACGAGTGATCCATCATCCCCTGAATCCAGATGGGAGTCGTTCATCAAGGGGACAGAGGGTGCATTTACAGCTTTGGGATACAGCTGGACAAGAAAGATTCAGAAGTTTAACAACAGCTTTCTTTCGAGATGCTATGGGATTTTTACTTGTGTTTGATCTGACGCATGAACAGTCGTTCTTAAATATTAGGAATTGGTTAAGTCAGCTGCAAACACATGCTTACTGTGAAAACCCTGATATAGTTCTGATTGGAAACAAAGCAGATCTTGAAGATCAGAAACAAGTAGATGAAAATGAAGCCAGAACACTTGCTGAAAATCTTGGACTGAAATATTTTGAGACGAGTGCATTAAGTGGACACAATGTCAGCGAGTCAGTTGAAGCTCTGCTTGATCAGGTTATGAGGAGAATGGAAAACTGTGTTGATAAGGATACATTACCCAACAATGTGTTAAACAATAACCCAAACAGAGGCACAAAGCTAAGAGAGGTTGACGAAGCCAATGATGAATCACAAGGAGGATGTTCATGTTAGAAATCATGTCAAAACAAGAATAATAATCCTGTTATACAATATTGAACATATACCAGTATGTAGCTGAGTGTTAGCTTACTTGGTATTCATTTCTTTCACCCTCTCTTCTGTCTGGATAAAGCTGCCATTATATCAAAATAATTGTTAATTTGTCTGTGGAGCAAACAATGAAATTATGAATGGGAAGGGCATTGTTTGTTTTCAGACTATTTTAATTATTTATTTGGTAATATAGAAATTGTTGTATTACCATAAAATCTTATCTTAAGGGAAATCAAGTTGCTGAGGTTTTTACAAATCAAGGTTATCCATACTCATCATTCTTTTAGAGTTGTTATGCTTGTCCTAAAACCTTGATAATTTATGGCAAGCTATACTTCTTTTCTGGGGAACTGTGGAGAGTGAAGACTAAGCTAAACATGCCGAGGTTCCTGTGAATGAACTGTTACTTAAATCAATGTTGACAATCAGGATTTGAGAAGAAATCATTAAAGTGCAAAATAATACAATTTATTACTCAATGACAATGTGATGTGGTTATGTCAAGTTGGCTCTGATCAATTTCGTGTCTAATGAATATTTGAATTATTTGAAATTGTTGCTGAATTTTATCAAGCTCTAATTTAAACAAGCATATGAATTGATAACCAAAGGTAAATTGAACCAATCAGGGCAGGATTTCAGGAAATTTTGCATGTGCtaataataacaataaaaataattatTAGCATTCCTCTAGCAACGCAGCATATAAATGCAATAtttacatcaagtaagctatgatcctcgcagttgatcATATATCACTTCGCAATATTTACAGTACATAATAATTTATTAGTTTTAATAAGGGACTGTTATGTGCACATAACATTATTATTAACAAATTATTAATTATCAGTGGATGAAATTTTTTTATGTTTGTTGAAGTACTTAGATGAATATAATTGTAATTATTATTATTATTATTTTTAATAGAGTAAGGAATACAGGCTGTGGTCATTTTAGAACAATTTGGTATTATAATGTTAAATTTAGAAACATGCCTTTTGAATACATTGATTCTGTGACCTAAAAAATTGTTGTTCATTTATGAAGAGTAAGACTTTATTATACTTTGGTTAATGAAgatttagtaaatggttcagaattttggattctttcatttaggatttatgatGGTGATTGGCAATAATGTGCTTTATTATGCTAGTAATGAATGATTATTATCACTTTGTACAGGGTCAACAATGTCTGGAGTTCTATGAGTTAAGAGGCCAAATGAGTTTTATCATTTAGTTGCTTTGTAATATTTCATGTTTATCTGCTCAAGCTAAAATAGCACATTATGACGTTACACATAAAATAATTATTGTTATTATGAATAAGACTAGCTATAGTATTCACGCATTGAGGCGTAGCAAAAGGCGTACTAAAAGCTGTAATTAAATTTACAAGATGACTTTGTATTTTTGACATTTTGGAAGCATTTGTCCAATCCAAGGTGTAGCATTTCTTGTAGGTTACTGGAAACTTATTTATTTACTGTTTTGTACTTACTGTGTGCATGCATGTGTTGAGTAACATTTTCTCTTTATTCTGAATGCGATCTTCTTCCTATAATATTTGATATTGCTGAAAGCAGTGGAGCTGTGTGATACTCCTATCATGGCAGCTAAAAGCTAAACAGGCACTTTTGTGCATTTAGGCGATTTTTACCGCATTGTTATAGAAACGTACCAACAGTTTGGTGGTCTTTTACTGTCCTTACTTCAGAAAGATGCCGAATTTATTATGAGTGTATTCTTTGTTTGTAACGTTAGACATTGTTTGAGAAAGTCTGTTATTTATGTGACTGCTATGGTCAGAAAACATTGGCAAAAGAAAATAAATCAACTTAAATGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23640	Ras-related protein Rab-27A OS=Rattus norvegicus OX=10116 GN=Rab27a PE=1 SV=1
P51159	Ras-related protein Rab-27A OS=Homo sapiens OX=9606 GN=RAB27A PE=1 SV=3
Q9ERI2	Ras-related protein Rab-27A OS=Mus musculus OX=10090 GN=Rab27a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004970 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR050305 all species →	Family	Small GTPase superfamily, Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47980 all species →	LD44762P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0008021 all species →	Cellular Component	synaptic vesicle	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0017157 all species →	Biological Process	regulation of exocytosis	Interproscan
GO:0030140 all species →	Cellular Component	trans-Golgi network transport vesicle	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043197 all species →	Cellular Component	dendritic spine	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0048210 all species →	Biological Process	Golgi vesicle fusion to target membrane	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan
GO:0098969 all species →	Biological Process	neurotransmitter receptor transport to postsynaptic membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0101.g17.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.