Gene detail

Detailed information of amic_s0101.g18.t1 in Acropora microphthalma

Genomic Location: sc0000101_pilon:209446...221266
NR annotation: XP_029212066.2, hepatoma-derived growth factor-related protein 2-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0101.g18.t1

GGTCACATATTTCACTCGATCCAGTACCAGGCTTTCTTTACATTTTACGAGATCTCTGGTTTGCGAGGAACGTTTTAAAAATATTTTTATCTAGTAAATTGGCTTTTTTACACCAAAATTTTCAAGGAAACAGCGTTAGGATGAGTTTTTCTCCAGGTGATCTTATTTGGGCTAAGATGCGTGGCTACCCACATTGGCCAGCTCGAATTGATCTTCCAGCGGAAGGCGAGAAGATTCCACCCAAGAAATTTGCTATATTCTTTTTTGGAACTCATGAAACAGCTGTTATGCAAGCAAAGGACCTGTTTCCTTACGAAAAAAATAAAGAGAAGTTTTTAAAAAATTCTAATCGTTCACGGCGAGGATTTAAGGAAGCTTTGGTTGAAATATTAGAGAATCCTAAAGTTAAATGGGGAATGCGAGGACaagatgaggatgaagatgaggatgaggacagtgaaggtgatgaagatgaTTCAGGAGAATCAGAGACAGAGAAAAAGTCTGAGTTTGAAGACTCTGATAAGGAAGGAAAAGGAAACAAATCCGAAAAGAAGGAGAAATCTTTTAAGGGAAAGAAACAGTCAGTTTCTGGGAAGAAGGAGGAAATGTCAAAAGCGGGAAGAACAAAAAGATCACAATCCAACAGCAAGAAACAAGCTAAATCAGAGTCTCCAGAAAAGGAGAGCTCTTTTGAAGAAACCCCAGATGAAGAAAGTTCAGATAATGACAAAGAGGAAGATGAGTATAAACCTGTTCCCAAAAAGCAAAAGTTGACTGAAAAGGCTAAAAAAAGAAGAAAAAGTTCCAAAGCTGTCAGTGACAGCAGCAGCAGTAGCAGTAGTGGCAATGATGATGAACCAGAAGTGAAAACTGAGAAGCCTGGGAAGCAGAGGAAAATGTCAGGCTCTGAAAATAAGGGTGCTACTGAATTCAGTAAAGCTGAGCCCAAGAAAGCAAAGCTAGATAACTCGTCTTTTAATGCTGATGAAGTAGTGaagataaaaaaagaagagaagagcaaaagcaaagatgatactgagaagaaaaaacaagagaagCTGCAGAAGATAGCAGAAAAAAAAGCCATGTTAaaagagaaaaagaaaaaagagaagcttgagcaaaagaaagcagagaaagctaaaatgctagagaaggagaaggaaagagaaaaacaggagtatgaaaaagttgaaaaagaaaaaTCAAGATACAGACAGGAAAGAGAACGAGAAAAGGCAACAGAGAGAGCAGAAAAGGAAAAACAAAAAGAAAAAGAAAGGAAGGAAAGAGAAAGAAGGAAATCTACACCTCCAACAGTTGAAGAAATATTGGACAAAATGAATTATAACCTTGTTATGTCTCTTACTGTGGAAGCACCTGATGTTCCAAAATGTTTGAAAATTATCACCCAGATCTCAGAGATGGAGATTAATCCAGATATCATCAAGAAAAACCCAGAGATAGTTCAAACCATAAAAAGGATAAGAAATTACAAACAAAATTCCAAAGTGCGTGAGAAAGCCAGTCAGCTGTACACACAATTCAAGTCACTCTTTTCTATTGCTGGCGCAGATTCTTCAGTGAAACCGCCGCCAAGGGCTGCTTCAACCAACGAAACTACACTTCTTGGTACTACGACTTTGGACAACAGTGAAAGAACAGAACCTTTGGCAGCAGCAGCTGTAGAGGACTCAGTAGAGACAAAACAATTACCCCACGATACCCCTACCGAAAATGGCAGTGATTGGCATGGTCCCTCCGTTGAAGTTAATCTCGGCATTGAAACAGAGGAAACAAGGTCTAAATATTTGATAAAGGAAGAACTCCAAGAAAATGATTCAAGCGTCGACAATCTTACGCCCGAACCAATGGAGGTGCAGAATGCAGCGGACCCTACTGAAAATTTATCACCGTGCGATATGGATATATCAAGCCCCGACTAATAATTTATGCCCTGTTTTATACGAAAGACATTATTCTTTGAAGAGATAACGCCTGACAAAGATTCGCCTTTAGAATCAATCGGGTCAAGTTTGCGGCACAGTTTGTTCTCAGTGGAACTTTGGCAAACGTTAAGGAGTACATTCCATATTGCACCATTCAGTTGTAGCGTGACAAGAAAGAAGAATGGTTTTAACATTCGAGAAAAGGTTTACCTTCAGTTCAAATCTTGTGACTTGTTGAGTCTTAAGGGTTTAATTCGACACTTTTCCTGCTCGATATTGTGCTAATGTTCCTAGATTCGTTGAAATGAAGTCATTCTTTAGGGGACATTTGACACTGAGCTCGAGACTGATTCACTTGCTCTTTTTATGATCACCTCATTCTTGGGAATTAACGAGTAAGCCTTCTGTCTACTTGTTGCCGAAAGAAGAATTCTTCTTCTTTAGGAATTTACTTTTGCACCCAAACCGTATGACGCCGAACGATTTAATATAGTATCCTGTCTATTGCGAGCGTTTGTGTCcaggggcccgtttctcaaaagtcccgaaacttttcgggtctatttcgggtgccacaattccctttatatcttcgcaacgctgaggttctaagccatcaaacttcgcaatcctctggggttttttatattaaaaacatgtaaaaagatcagcttttcaaaacaagcggattgcagtttgacaactagcttttcgggcccgaaaagttctcgggactttcgagaaacgggccccAGGTCACCTATTTCAAAACCATTCCGATTTTTGGATACTGTGCAAAATCCTGTCAGTTCCAATAATACAGTTAAATCATTTGTTCAATCTACTTTGTCTTCATTCGCAACTGCACCAGTATCTATTTGCAAATTTCAAGTTTGTCCGTCACCTACAACAAGAATGCATGAAATGGGATAGAAAAGTTGTTTTAAAGTTTGATACCTTTACGGTGAAGATGTTTTTATTATTACTGATGTTGTGCTTGAATAGTAAAAGTAAACATGCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JMG7	Hepatoma-derived growth factor-related protein 3 OS=Mus musculus OX=10090 GN=Hdgfl3 PE=1 SV=2
Q923W4	Hepatoma-derived growth factor-related protein 3 OS=Rattus norvegicus OX=10116 GN=Hdgfl3 PE=1 SV=1
Q9Y3E1	Hepatoma-derived growth factor-related protein 3 OS=Homo sapiens OX=9606 GN=HDGFL3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003399 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11467 all species →	LEDGF	Lens epithelium-derived growth factor (LEDGF)	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036218 all species →	Homologous_superfamily	HIV integrase-binding domain superfamily	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR035441 all species →	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR021567 all species →	Domain	Lens epithelium-derived growth factor, integrase-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12550 all species →	HEPATOMA-DERIVED GROWTH FACTOR-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0101.g18.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25065	HDGFL2; hepatoma-derived growth factor-related protein 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.