Gene detail

Detailed information of amic_s0101.g67.t3 in Acropora microphthalma

Genomic Location: sc0000101_pilon:909174...915699
NR annotation: XP_015764141.1, PREDICTED: catenin delta-2-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0101.g67.t3

ACCATTTTTTTCTATGTCTTCTTACCTTTGAGTTTCTTGTTTTCAGGGAACTTGGTGGCGTTCCAGTGATTGTGAGATTACTGCGGCACTCCGAGTGGCGTGTTCGATATGCGGCCATCTGTCTGCTGAGAAATCTCTCGTTCAGTATGAAATACGACGCTAACAGGCTGGCCATCGCTGACTGTGGAGGGATAGAAGCCCTAATTGAAATCTTACAACAAACTAACACTATCGAGCACAAAGAAGCTATTCTTGGAGTTCTGTGCAACTTATCTTCGGTTCAGTGTCTGGAACATTCTGTCTGCACACTGAGAAACCTGTCATACCGGCTTGAGAGCGAGATTGACAGAGATCGCTATGACGACGCTGACGTAGATGTGAACCCGGCGACTGTCAAGGAACAACAAAGCCAGGGATGTTTTGCAGGGTGCGGGGGAAGGAAGAAGAAAAAGGTCCCGAGAGATAAAATGCCCACAGAGCGGCCAAAAGGTCCTCCACAAGGAGTGGAACTTATCTGGCAACCGCAGACAGTGCAGCAGTATTACTCGCTTCTACGGAAATCGGAGAACAAGGAAACCTTAGAGGGGTCGGCTGGAGCATTGCATAACTTGACTGCGTGTTCTTGGAAGTGGGCCATCAAGATCCGCGGCGACACCAGAAAAGCCCAAGCCATTCCACACATCGTCGATTTGCTAAAAATTGATTATGATCCAACAATTCGAGCAGCTGCCATCGCTCTTCGTAACTTGTGTGTTGATCCAGAGAACAAAAGGAGTGTAGGTGAGAAAGCCATGATCTATCTTGCTCAAAGGTTGCCTACAGGGGAAGAAGAAATGCCAAGACTTGTACAGGACCCCACTTTATCCTCGCTTCTTTGTACTATCTATCAGCTGGCCAATAAGAACGACAAGAACGCCAAATTTCTGCGTAAAACGAAAGGCATTCAAAGGATGGTTAAAATAGCAACAGACCAGGACGAACTCTACTCCGCTAGGGTGGTCAAAATAGCGAATCAGGTTTTATCAAACCTATGGAGTCATAGTCAGTTGCAGCAACAAATGAAACACGAAGGATGGCAAAACAACGTGTCCACACAGAACGGCGAACTCGCTCGAGGGCCAATGGATTTTGAAGCCACATCTTTAGCTAGCACACCCGACCAGCGCGTGTACCGACAGGACGCGACCATGAGACGATTTAACGATTCGACGGATAACTGGGGCAATGTGAACGGTGATATAGGAGTTGCCGACGTATCTTCGGAATCCGATCGGCAACGAAGCTGGGGCGAAAGCTTGACTCAACTGCCACCTCCCTACGTGTCGGAGGATAGGTCGTCGTTGCGGGAAAGTCGGTCAAGAGATATTCCTATGGAAGAGATGCGTAGCTCATCCCGAGCATCGGGCACGAATTCTTTCCGAGACGAGAGTTCCAATACCAGTGATAGGACACTGACATTAAAGGACAGTGGGGGTGGAGGTGGTAAGGATGAAGACTTGTGGGTGTAATGCGTAGGAGTGAAATATAACGGCCTACAATCTGATCTAACCAAGAGAAAAGGGAAATCAGAACCAACAACAATTTTTCTGCACTTTGTTCCGACGTTGCAGTGTGTCACTTTTTCTAAATAAATTATTTTCTTTAGCTTGATAGTATGTACATGTGGATATGTTTCTGTAATTTCAATAGTTAGCCATAACTTAAGAGAAATGTTTTGACTGGAAAAAGCAACTTTCTTTTATTATTGTAAAAATTTTATATAATTGTAATAAGTTAAGCATTTGTTATGCACCGCCTTAAACCATTATTGATCACATTTACGATTTTCTGAAACAGTACTTCAATAGAGATAGGATATTTTTTCACAGACAGAGGCGACTTGAGCTGTTTAACGACCGAGCAAAAATTTTCCGCGAAATTAAAATACATTGAAGTATAGGTTAGCTAGGAAATTGTTGAATTGATTTTCCTATACTCTATTCCTTTGTGTTCCTGATCGGAAAAAAAAAGGAAAGACATTCCTACTTATGAAATAAGACTTAAATCGCAGGAAAATGTTTCACCATTCTTGTGAAAAGATGCAATATTTTCCCCCTAGATCTCTAATACAGACCACTGTCCAGGTCCTTACTCTGTTCAAGTTGAACAATTGTTGACACTTGCACCCTGTTACAGGCGCTTGCAGTGGTAAGAGTAATTTGCGCATATATAAAACAATATTGTGATATCAAAACGTCGTATAATTAAAATGTTTATAAATTTTCTGATATTTGTAGACTGTTAGAATGTTTGATTCTCATTAAAAATCATTGTCCGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B4F7F3	Splicing regulator ARVCF OS=Rattus norvegicus OX=10116 GN=Arvcf PE=1 SV=1
O00192	Splicing regulator ARVCF OS=Homo sapiens OX=9606 GN=ARVCF PE=1 SV=1
P98203	Splicing regulator ARVCF OS=Mus musculus OX=10090 GN=Arvcf PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003887 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028435 all species →	Family	Plakophilin/Delta catenin	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10372 all species →	PLAKOPHILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0101.g67.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.