Gene detail

Detailed information of amic_s0102.g112.t1 in Acropora microphthalma

Genomic Location: sc0000102_pilon:1512304...1530263
NR annotation: XP_029190655.2, coatomer subunit beta-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0102.g112.t1

ATGCACCGTCTCCCGTTAGAACAGTTGATAATGATGTTTCATACTGAAACTGTTCTTTTAAAGATGACCACGGCTGAACTACCTTGTTACACATTAATCAATGTTCTCTCTGATTCGGAAGCCTTGAGCGAACAAAAGCTAGCTGAAGATCTCGAAAAAGGTGATCCAAGGGTTAAAACAGAAGCTCTCAAGAAAGTGATCCAACAAATATTGAATGGAGAAAAGATGCCATCACTTCTTATGGTTATCATAAAGTTTCTCATGCCACTTGATGATCACACCATCAAAAAACTTCTTTTGATTTTTTGGGAAATTGTTCCTAAAACGGGAAAGGATGGTAAGCTGTTACAGGAGATGATTTTGGTTTGCGATGCTTATAGGAAGGATCTTCAACATCCAAATGAATATATTCGAGGATCCACCCTCAGGTTTCTCTGCAAACTGAAGGAAGCAGAGTTGCTAGAGCCCCTCATGCCAGCCATTAGAAACTGTCTGGAACATCGCCACTCTTATGTACGGCGTAATGCTGTCATGGCAATATACACCATCTATAGAAACTTTGACTTCCTCATTCCTGATGCGCCAGAGTTGGTTCATACATTCCTGGAGCAGGAACAAGATGCTTCTTGTAAACGAAACGCCTTTATGATGCTGATACATGTTGACCAGGACCGTGCCTTGGAATATCTGAGTACATGCATTGATCAGGTCAACACTTTTGGTGATATACTGCAGTTGGTTATCGTTGAATTGATCTACAAGGTGTGCCATGCCAATCCAGCTGAAAGGTCACGTTTTATACGCTGCATCTACAACCTGTTGAATTCGTCATCACCTGCAGTGCGTTATGAAGCTGCGGGAACTTTGGTAACACTGTCATCTGCTCCAACTGCTGTGAAGTCTGCAGCATCTTGCTACATCGAACTGATTGTCAAGGAAAGTGATAACAATGTGAAACTGATTGTGTTGGACAGACTGATTGCTCTGAAAGAAAATCCATCACATGAAAAAGTCCTCAGGGATCTTGTTATGGACATCCTCCGTGTCTTGTCCTCTCCTGACCTTGAAGTGCGGAAGAAGACATTGCAGCTGGTGTTGGATCTGGTCACCTCGCGTAACATACATGAGGTTGTCGCTGTATTGAAGAAGGAGGTTACCAAAACTCATAATGAAAGTGAACATGAAGATATTGGTGGATATCGACAGATGCTGGTTCGCACCCTGCACACTTGCAGCGTGAAATTTCCTGATGTGGCTGTTTCTATTGTTCCACTGCTGATGGAGTTCCTGGGTGATTCAAATGAGCAAGCAGCATTTGATGTTTTACTGTTTGTACGTGAGGCAGTTCAACGCTTTGAACAGTTGAAGCCAGTGATCATGGAGAAGTTGTTGGAAAATTTCCATACTATCAAAACTGTAAAAATTCATCGTCATGCCTTGTGGATCATGGGTGAATATGCCACCAGTAAGCAGGACATTTTGGATGTTATGCAGGAAATCAAGAAGGGGCTGGGAGAGGTTCCTATCGTAGATGATGAAATGAAACGAGCAGCTGGTGATGCTCAAGAGGGATCTGAACAAGCTCCATCATCTCAGATGGCGGGAGGGCAGCGTCTGGTGACAGCTGATGGGACATATGCCACTCAAAGTGCGCTCAGTGCCCCTGGGATTACTTCCCTGTTGAAGAAGGACGAGGAAAAGAGGCCTCCCATGCGTCAGTACTTGTTGGATGGTGAGTTCTTTGTGGGAGCAGCCATTGCTTGTACATTGACAAAACTTGCGCTGCGCTACTTGGACATTGAAGAGGACAAAGAAAAACACAACGTGTTCTGTGCCAACTGCATGCTCATCATGGCCAGCATTTTGCATCTTGGAAAGTCTGGTTTACCAAAGAAGGTGATCACAGATGATGATGTAGACCGTATCTCTCTGTGTGTTCGTGTCGTAGCCGAGCGTGTCCCTCTCATGAAAAATATTTTCACTGTCGAGTGCCGCAACTCATTGTCTTCCATGCTGGATGCTAACAAAAAGGGAGAGGAGCAAAAACTTAACAAGGTGGATTTGGACAAGGTTTTGTCAATACAAGTAGATGACCCCATTCCCTTCATGCAGCTCTTAGCCAAGTCTGATTCGGGAATCACCGAGGATCAGTTTGCACTTGCTCTATCCCAAGCGGTTGGTTCTGTCGGTGGAAAGAAGGAAGAAGAACTTGTAGGCTCTAAACTCAACAAGGCACAGTATATTTGTGATTTGAAGCTGGTTGAGAAGCCGCAGCCAATTATGTTGGGACCAAATGACTTCTCCAATATCAAGGCAAATGTGAAAGTGTCTTCAACGGAAAATGGTATCATTTTCGGCAATATAGTGTATGATGTATCAGGCGGCCCAGGGGATCGCAATTGTGTTGTTTTGAACGACATTCATATTGACATCATGGACTACATTGTGCCGGCCACCTGTACCGACTCTGATTTCAGGCAAATGTGGGCAGAGTTCGAATGGGAGAACAAGGTAACTGTGAACACGAACATCTCCGACCTGCGTGAATATCTGAACCATCTGATTGCTTCAACAAACATGAAATGCTTGACACCAGAGAAGGCATTGGCAGGAGAGTGCGGTTTCATGGCAGCTAATCTGTACGCTCGCAGTATATTTGGAGAAGATGCTCTGGCCAACGTGTCAATCGAGAAACCAAGCGACCAATCAGGGCCCTCAGTTACGGGTCACGTGCGCATCCGAGCCAAGAGTCAGGGAATGGCACTAAGCTTAGGTGACAAGATTAACCTATCCCAGAAAAAGACAACGAAGTGA

Transcript

amic_s0102.g112.t1

CTATAATTTCTTCAATGGCGCTTCTACCAGTCCATTTCCCGTGTGCTGGGTGAAAAACAAGGGATGCGAGGAAGAAGCAAAATTAACCAAATAGTCACCATTTCTCAAATGTTTATTTTCAAGTGACGTTTTCGTTGCCGTTACAGTCGTTGCTCCTTAAGCTCCCTATTAGTTTAGTCGGGGACGGTGCTTCCTTTTGCCTCTAAATATTTGTTCTTTCAGGAAAAGTTGGTAAACTGTATCTATTGTTGATTTTTGCGCGGTTTGTCCTAAAACACAATCAGAGTGACACAATCAAAGAGGAAACTACGAGGCCAGTTGTTTTTTGTCATCGTTTTTTCAACTCTCTAATCATGTCTGCATGCCCTATTGTCCCTAAAGGTTTTTTTTCTTTATTTTCAATGTATATTTCAGTGTTCTTTCTAAAAGCTGCGTTGCCTCCATAGTAGTAGCCTGATCGCAGTAAATTTTACAATGTCCTAGTCGCCAGGAACCATGTCATCACTTCAATTTTATCAAGCTCCGACACCTTTCCAGCTTAATGATTAAGAACATTTCCGTAACGAATTGACAGTTGTCGAGAATTTCTAGATGCGAAATTAGCAGGATGCACCGTCTCCCGTTAGAACAGTTGATAATGATGTTTCATACTGAAACTGTTCTTTTAAAGATGACCACGGCTGAACTACCTTGTTACACATTAATCAATGTTCTCTCTGATTCGGAAGCCTTGAGCGAACAAAAGCTAGCTGAAGATCTCGAAAAAGGTGATCCAAGGGTTAAAACAGAAGCTCTCAAGAAAGTGATCCAACAAATATTGAATGGAGAAAAGATGCCATCACTTCTTATGGTTATCATAAAGTTTCTCATGCCACTTGATGATCACACCATCAAAAAACTTCTTTTGATTTTTTGGGAAATTGTTCCTAAAACGGGAAAGGATGGTAAGCTGTTACAGGAGATGATTTTGGTTTGCGATGCTTATAGGAAGGATCTTCAACATCCAAATGAATATATTCGAGGATCCACCCTCAGGTTTCTCTGCAAACTGAAGGAAGCAGAGTTGCTAGAGCCCCTCATGCCAGCCATTAGAAACTGTCTGGAACATCGCCACTCTTATGTACGGCGTAATGCTGTCATGGCAATATACACCATCTATAGAAACTTTGACTTCCTCATTCCTGATGCGCCAGAGTTGGTTCATACATTCCTGGAGCAGGAACAAGATGCTTCTTGTAAACGAAACGCCTTTATGATGCTGATACATGTTGACCAGGACCGTGCCTTGGAATATCTGAGTACATGCATTGATCAGGTCAACACTTTTGGTGATATACTGCAGTTGGTTATCGTTGAATTGATCTACAAGGTGTGCCATGCCAATCCAGCTGAAAGGTCACGTTTTATACGCTGCATCTACAACCTGTTGAATTCGTCATCACCTGCAGTGCGTTATGAAGCTGCGGGAACTTTGGTAACACTGTCATCTGCTCCAACTGCTGTGAAGTCTGCAGCATCTTGCTACATCGAACTGATTGTCAAGGAAAGTGATAACAATGTGAAACTGATTGTGTTGGACAGACTGATTGCTCTGAAAGAAAATCCATCACATGAAAAAGTCCTCAGGGATCTTGTTATGGACATCCTCCGTGTCTTGTCCTCTCCTGACCTTGAAGTGCGGAAGAAGACATTGCAGCTGGTGTTGGATCTGGTCACCTCGCGTAACATACATGAGGTTGTCGCTGTATTGAAGAAGGAGGTTACCAAAACTCATAATGAAAGTGAACATGAAGATATTGGTGGATATCGACAGATGCTGGTTCGCACCCTGCACACTTGCAGCGTGAAATTTCCTGATGTGGCTGTTTCTATTGTTCCACTGCTGATGGAGTTCCTGGGTGATTCAAATGAGCAAGCAGCATTTGATGTTTTACTGTTTGTACGTGAGGCAGTTCAACGCTTTGAACAGTTGAAGCCAGTGATCATGGAGAAGTTGTTGGAAAATTTCCATACTATCAAAACTGTAAAAATTCATCGTCATGCCTTGTGGATCATGGGTGAATATGCCACCAGTAAGCAGGACATTTTGGATGTTATGCAGGAAATCAAGAAGGGGCTGGGAGAGGTTCCTATCGTAGATGATGAAATGAAACGAGCAGCTGGTGATGCTCAAGAGGGATCTGAACAAGCTCCATCATCTCAGATGGCGGGAGGGCAGCGTCTGGTGACAGCTGATGGGACATATGCCACTCAAAGTGCGCTCAGTGCCCCTGGGATTACTTCCCTGTTGAAGAAGGACGAGGAAAAGAGGCCTCCCATGCGTCAGTACTTGTTGGATGGTGAGTTCTTTGTGGGAGCAGCCATTGCTTGTACATTGACAAAACTTGCGCTGCGCTACTTGGACATTGAAGAGGACAAAGAAAAACACAACGTGTTCTGTGCCAACTGCATGCTCATCATGGCCAGCATTTTGCATCTTGGAAAGTCTGGTTTACCAAAGAAGGTGATCACAGATGATGATGTAGACCGTATCTCTCTGTGTGTTCGTGTCGTAGCCGAGCGTGTCCCTCTCATGAAAAATATTTTCACTGTCGAGTGCCGCAACTCATTGTCTTCCATGCTGGATGCTAACAAAAAGGGAGAGGAGCAAAAACTTAACAAGGTGGATTTGGACAAGGTTTTGTCAATACAAGTAGATGACCCCATTCCCTTCATGCAGCTCTTAGCCAAGTCTGATTCGGGAATCACCGAGGATCAGTTTGCACTTGCTCTATCCCAAGCGGTTGGTTCTGTCGGTGGAAAGAAGGAAGAAGAACTTGTAGGCTCTAAACTCAACAAGGCACAGTATATTTGTGATTTGAAGCTGGTTGAGAAGCCGCAGCCAATTATGTTGGGACCAAATGACTTCTCCAATATCAAGGCAAATGTGAAAGTGTCTTCAACGGAAAATGGTATCATTTTCGGCAATATAGTGTATGATGTATCAGGCGGCCCAGGGGATCGCAATTGTGTTGTTTTGAACGACATTCATATTGACATCATGGACTACATTGTGCCGGCCACCTGTACCGACTCTGATTTCAGGCAAATGTGGGCAGAGTTCGAATGGGAGAACAAGGTAACTGTGAACACGAACATCTCCGACCTGCGTGAATATCTGAACCATCTGATTGCTTCAACAAACATGAAATGCTTGACACCAGAGAAGGCATTGGCAGGAGAGTGCGGTTTCATGGCAGCTAATCTGTACGCTCGCAGTATATTTGGAGAAGATGCTCTGGCCAACGTGTCAATCGAGAAACCAAGCGACCAATCAGGGCCCTCAGTTACGGGTCACGTGCGCATCCGAGCCAAGAGTCAGGGAATGGCACTAAGCTTAGGTGACAAGATTAACCTATCCCAGAAAAAGACAACGAAGTGAACAGTCATAGATAGCAATCAAACTGAGGATTGTTTTGCGTAGTTTGTTATTCCTCTCTCTCGTCAGCCTTTTTCTTTTACACTTTTGTGACACTACGCAGCATTTTGTCTACCAAGAGAGTCTTTGAGTTCCTAAATGTTACCATCAATTGACAAAATAATTGCAATAATAAATCAGAAGAAAGAAAGAATGAGGAAAATCGTAATTTTTAAAGAAGGCAAAGAGGTGGTAATGTCCAGGTGATAAAATTGTGGATATTTGAATGGGAAGCATTTGTTTGCGGCTGCGTTACTGGTACAGATTCCTCTAACAATATTGATGCGGGGGTTTTGGCTGTTTGTGTTACCGGGTCTATAGGCTCTTCCTTCAAAATTTTTACGTTTGTATGCTGGCGTGTGATCTCGTTAGCGAAAATCCGCCGTTTGCTTTTGTTTCTCGCCTTCAATCCCCAGCGAAACTATGGCGAAAAAAGGTGATCATGGGCTGGAGGAAAGCTGACTCTCCTCACCTCGCAGCCAGTTCAAGTGTATTGTGATCTCCACCGAAGGGGTTCAGGTTCCTCGTTTGCATACTGTTCGTCAGTTCTTATGTTTCCATTTACAGTAATCTCTTTTTTAATGATTTAGTATGTATGCAAATCGATTAAAAAGTAGCAGGTGTCCAAGAGACAATTTCCAAAACAACCTCCGTCTCTGGTAAACCGCAACTTATCAATCGAGAAAAACTTATCAAACGACAACTGAAATTATTGCAAATTTTTCTGTTAATTGAACAAACCTTGATATTCTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIA5	Coatomer subunit beta OS=Gallus gallus OX=9031 GN=COPB1 PE=2 SV=1
Q9JIF7	Coatomer subunit beta OS=Mus musculus OX=10090 GN=Copb1 PE=1 SV=1
P23514	Coatomer subunit beta OS=Rattus norvegicus OX=10116 GN=Copb1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005975 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF14806 all species →	Coatomer_b_Cpla	Coatomer beta subunit appendage platform	Domain	Interproscan
PF07718 all species →	Coatamer_beta_C	Coatomer beta C-terminal region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016460 all species →	Family	Coatomer beta subunit (COPB1)	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR029446 all species →	Domain	Coatomer beta subunit, appendage platform domain	Interproscan
IPR011710 all species →	Domain	Coatomer beta subunit, C-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10635 all species →	COATOMER SUBUNIT BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17301	COPB1, SEC26; coatomer subunit beta	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.